Wall clock time and date at job start Sat Apr 11 2020 02:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86804 * 119.99840 * 2 1 4 4 H 1.48488 * 109.47201 * 240.00143 * 3 2 1 5 5 H 1.48506 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46817 * 120.00070 * 3 2 1 7 7 C 1.39937 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99654 * 197.09738 * 7 2 1 9 9 C 1.41432 * 120.00203 * 17.09601 * 7 2 1 10 10 C 1.40784 * 120.17416 * 204.61177 * 9 7 2 11 11 C 1.37719 * 120.03737 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.41125 * 359.97438 * 11 10 9 13 13 C 1.39872 * 120.35895 * 0.02562 * 12 11 10 14 14 C 1.47890 * 120.02645 * 180.02562 * 13 12 11 15 15 O 1.21545 * 120.00506 * 203.40381 * 14 13 12 16 16 N 1.34778 * 119.99910 * 23.40696 * 14 13 12 17 17 C 1.47226 * 126.70001 * 355.58879 * 16 14 13 18 18 C 1.53794 * 106.35544 * 149.02946 * 17 16 14 19 19 H 1.09007 * 112.27179 * 256.96753 * 18 17 16 20 20 C 1.54177 * 109.13163 * 132.67683 * 18 17 16 21 21 C 1.54845 * 104.30451 * 223.08443 * 20 18 17 22 22 C 1.54854 * 102.73945 * 38.12996 * 21 20 18 23 23 C 1.54188 * 104.29758 * 321.87057 * 22 21 20 24 24 C 1.50699 * 112.24468 * 261.20693 * 23 22 21 25 25 N 1.34775 * 120.00213 * 298.11735 * 24 23 22 26 26 O 1.21282 * 119.99745 * 118.12460 * 24 23 22 27 27 C 1.47217 * 126.70251 * 175.90531 * 16 14 13 28 28 C 1.39036 * 119.95118 * 0.27564 * 13 12 11 29 29 H 0.97001 * 120.00174 * 359.97438 * 1 2 3 30 30 H 1.07993 * 119.98585 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.79222 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.82075 * 180.02562 * 12 11 10 33 33 H 1.08994 * 110.08010 * 268.25331 * 17 16 14 34 34 H 1.09001 * 110.07639 * 29.80353 * 17 16 14 35 35 H 1.09007 * 110.46438 * 341.79114 * 20 18 17 36 36 H 1.09003 * 110.46945 * 104.37489 * 20 18 17 37 37 H 1.08997 * 110.76638 * 156.45004 * 21 20 18 38 38 H 1.09006 * 110.75811 * 279.82570 * 21 20 18 39 39 H 1.09001 * 110.47142 * 203.16345 * 22 21 20 40 40 H 1.09006 * 110.46245 * 80.56850 * 22 21 20 41 41 H 0.97001 * 119.99909 * 0.02562 * 25 24 23 42 42 H 0.96996 * 120.00117 * 180.02562 * 25 24 23 43 43 H 1.09003 * 110.08160 * 330.19580 * 27 16 14 44 44 H 1.09001 * 110.07735 * 91.75093 * 27 16 14 45 45 H 1.08004 * 120.20294 * 179.70666 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0522 -1.2327 0.2744 9 6 1.3477 -2.4095 -0.3611 10 6 1.8254 -3.6490 0.1053 11 6 1.1806 -4.8135 -0.2480 12 6 0.0616 -4.7755 -1.0610 13 6 -0.4275 -3.5535 -1.5340 14 6 -1.6245 -3.5214 -2.4020 15 8 -1.8106 -2.5786 -3.1461 16 7 -2.5090 -4.5377 -2.3678 17 6 -2.3862 -5.7855 -1.5962 18 6 -3.8185 -6.2154 -1.2371 19 1 -4.0687 -5.9933 -0.1997 20 6 -3.9908 -7.7143 -1.5544 21 6 -5.3799 -7.8047 -2.2325 22 6 -5.4229 -6.5197 -3.0955 23 6 -4.7343 -5.4515 -2.2225 24 6 -5.7275 -4.5796 -1.4983 25 7 -6.5913 -3.8176 -2.1980 26 8 -5.7495 -4.5636 -0.2858 27 6 -3.7837 -4.6197 -3.0999 28 6 0.2155 -2.3692 -1.1917 29 1 -0.4850 0.8400 0.0004 30 1 2.6985 -3.6868 0.7398 31 1 1.5507 -5.7621 0.1117 32 1 -0.4370 -5.6946 -1.3318 33 1 -1.9055 -6.5540 -2.2014 34 1 -1.8098 -5.6087 -0.6881 35 1 -3.2107 -8.0515 -2.2371 36 1 -3.9755 -8.3024 -0.6368 37 1 -5.4467 -8.6937 -2.8596 38 1 -6.1751 -7.7960 -1.4869 39 1 -6.4542 -6.2348 -3.3039 40 1 -4.8717 -6.6659 -4.0244 41 1 -6.5739 -3.8306 -3.1678 42 1 -7.2303 -3.2561 -1.7319 43 1 -4.1928 -3.6209 -3.2522 44 1 -3.6327 -5.1132 -4.0600 45 1 -0.1559 -1.4237 -1.5585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887952452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:06:05 Heat of formation + Delta-G solvation = -71.218019 kcal Electronic energy + Delta-G solvation = -28470.463176 eV Core-core repulsion = 24644.114638 eV Total energy + Delta-G solvation = -3826.348538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.28407 -40.60883 -39.08749 -38.62925 -36.05632 -35.48811 -34.92969 -32.52625 -31.44616 -31.33135 -30.32633 -27.58845 -26.58757 -26.01054 -23.64660 -23.08786 -22.65337 -21.71048 -20.56877 -20.05395 -19.44541 -18.55985 -17.63847 -17.40727 -17.29766 -16.93839 -16.61894 -16.48760 -16.16716 -15.67227 -15.25012 -15.14181 -14.97839 -14.66187 -14.41873 -14.35983 -14.09503 -13.65402 -13.43899 -13.13774 -12.93979 -12.82267 -12.68446 -12.45745 -12.30289 -12.21560 -12.02019 -11.88600 -11.83348 -11.66825 -11.51828 -11.32799 -11.08439 -10.98500 -10.75031 -10.74322 -9.84706 -9.47612 -9.36775 -8.69008 -6.41078 0.38303 0.98684 1.33520 1.45693 1.48106 1.49093 1.86339 2.04385 2.16902 2.46772 2.73314 3.08195 3.37792 3.63062 3.68672 3.84715 4.00120 4.03128 4.22139 4.29430 4.33716 4.43568 4.48069 4.60248 4.60320 4.65758 4.80550 4.82915 4.86607 4.94483 5.04074 5.06742 5.14809 5.20057 5.22623 5.27305 5.30222 5.37150 5.49734 5.52052 5.80371 5.82510 5.92577 6.01920 6.26333 6.34133 6.38647 6.58858 6.85165 6.92245 7.13573 7.23703 8.27906 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.003492 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.526773 B = 8017.282595 C = 8876.714816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.029 3.971 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.499 4.499 8 H 0.085 0.915 9 C 0.068 3.932 10 C -0.215 4.215 11 C -0.096 4.096 12 C -0.213 4.213 13 C -0.136 4.136 14 C 0.576 3.424 15 O -0.591 6.591 16 N -0.614 5.614 17 C 0.088 3.912 18 C -0.094 4.094 19 H 0.078 0.922 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.099 4.099 23 C -0.092 4.092 24 C 0.529 3.471 25 N -0.836 5.836 26 O -0.586 6.586 27 C 0.115 3.885 28 C -0.135 4.135 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.142 0.858 32 H 0.154 0.846 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.417 0.583 42 H 0.407 0.593 43 H 0.062 0.938 44 H 0.111 0.889 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.604 -15.983 -7.605 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.528 4.528 8 H 0.104 0.896 9 C 0.066 3.934 10 C -0.235 4.235 11 C -0.114 4.114 12 C -0.232 4.232 13 C -0.139 4.139 14 C 0.369 3.631 15 O -0.473 6.473 16 N -0.346 5.346 17 C -0.034 4.034 18 C -0.113 4.113 19 H 0.096 0.904 20 C -0.147 4.147 21 C -0.156 4.156 22 C -0.137 4.137 23 C -0.096 4.096 24 C 0.314 3.686 25 N -0.400 5.400 26 O -0.466 6.466 27 C -0.007 4.007 28 C -0.156 4.156 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.249 0.751 42 H 0.239 0.761 43 H 0.080 0.920 44 H 0.129 0.871 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.736 -15.373 -7.235 21.234 hybrid contribution 0.005 1.908 0.177 1.916 sum -12.731 -13.465 -7.058 19.829 Atomic orbital electron populations 1.69900 1.09397 1.30561 1.35840 1.26890 0.95392 1.05092 0.91187 0.85213 0.78670 0.75260 0.80365 1.18380 1.19699 1.17477 1.19861 0.98372 0.92142 1.42447 0.89645 1.17920 0.91701 0.94029 0.89729 1.21442 1.03722 0.92824 1.05535 1.20978 0.95127 0.97764 0.97510 1.21550 1.00485 0.96120 1.04998 1.19702 0.96554 0.95868 1.01793 1.18498 0.82992 0.80235 0.81399 1.90647 1.77803 1.35880 1.42930 1.48344 1.20567 1.18556 1.47120 1.23082 0.97892 0.85130 0.97250 1.22627 0.92123 0.97292 0.99286 0.90380 1.22498 0.98757 0.91629 1.01843 1.22518 0.96442 0.97990 0.98698 1.22570 1.01245 0.92014 0.97874 1.22158 0.94364 0.96210 0.96849 1.20548 0.81174 0.79789 0.87131 1.43684 1.37859 1.46396 1.12028 1.90716 1.72030 1.67656 1.16198 1.22350 0.82443 1.00411 0.95543 1.21364 0.98563 0.96029 0.99605 0.90435 0.87213 0.84069 0.82882 0.87491 0.89652 0.88809 0.90478 0.88228 0.92316 0.89450 0.87487 0.75140 0.76108 0.91989 0.87100 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.02 10.94 21.83 0.24 -47.79 16 2 C 0.03 1.55 5.15 85.25 0.44 1.99 16 3 Si 0.98 40.80 29.59 68.60 2.03 42.83 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.50 -28.00 9.05 23.47 0.21 -27.78 16 8 H 0.09 4.49 7.90 -2.91 -0.02 4.47 16 9 C 0.07 3.85 5.57 -21.32 -0.12 3.73 16 10 C -0.22 -10.36 9.78 22.77 0.22 -10.14 16 11 C -0.10 -3.91 10.01 22.18 0.22 -3.69 16 12 C -0.21 -8.74 8.00 22.70 0.18 -8.56 16 13 C -0.14 -6.81 5.77 -20.13 -0.12 -6.93 16 14 C 0.58 27.06 7.71 86.80 0.67 27.73 16 15 O -0.59 -31.84 16.83 -3.86 -0.06 -31.90 16 16 N -0.61 -21.21 3.32 -818.40 -2.72 -23.92 16 17 C 0.09 2.34 4.71 86.51 0.41 2.75 16 18 C -0.09 -2.15 3.45 -9.55 -0.03 -2.19 16 19 H 0.08 2.33 6.73 -2.38 -0.02 2.32 16 20 C -0.11 -1.53 6.36 31.62 0.20 -1.33 16 21 C -0.12 -1.30 6.90 31.86 0.22 -1.08 16 22 C -0.10 -1.11 5.97 31.63 0.19 -0.92 16 23 C -0.09 -1.92 0.80 -51.68 -0.04 -1.96 16 24 C 0.53 13.85 6.76 87.66 0.59 14.44 16 25 N -0.84 -14.66 8.43 -173.53 -1.46 -16.12 16 26 O -0.59 -21.36 16.29 -3.04 -0.05 -21.41 16 27 C 0.11 2.93 6.14 86.51 0.53 3.46 16 28 C -0.13 -7.84 8.23 23.01 0.19 -7.65 16 29 H 0.29 15.24 8.30 -92.71 -0.77 14.47 16 30 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 31 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.15 4.90 4.34 -2.91 -0.01 4.89 16 33 H 0.11 2.12 6.77 -2.39 -0.02 2.10 16 34 H 0.09 2.64 5.31 -2.39 -0.01 2.63 16 35 H 0.09 0.98 7.17 -2.38 -0.02 0.96 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.09 0.73 7.75 -2.39 -0.02 0.71 16 40 H 0.11 0.78 7.17 -2.38 -0.02 0.77 16 41 H 0.42 4.50 8.81 -92.71 -0.82 3.68 16 42 H 0.41 6.55 8.93 -92.71 -0.83 5.73 16 43 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 44 H 0.11 2.10 7.12 -2.39 -0.02 2.08 16 45 H 0.09 6.06 5.92 -2.91 -0.02 6.05 16 Total: -1.00 -82.58 357.26 1.36 -81.22 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -0.58 Total: 35.21 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 3.97 Total: -18.13 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -3.94 Total: -87.83 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.11 Total: -53.31 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -82.58 1.36 -81.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887952452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.007 kcal (2) G-P(sol) polarization free energy of solvation -82.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds