Wall clock time and date at job start Sat Apr 11 2020 02:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31353 * 1 3 3 Si 1.86801 * 119.99761 * 2 1 4 4 H 1.48507 * 109.46865 * 274.90326 * 3 2 1 5 5 H 1.48502 * 109.47015 * 34.90053 * 3 2 1 6 6 H 1.48500 * 109.47159 * 154.90628 * 3 2 1 7 7 C 1.39009 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00166 * 3.92242 * 7 2 1 9 9 N 1.36892 * 119.99465 * 183.92252 * 7 2 1 10 10 C 1.38218 * 125.61735 * 126.21893 * 9 7 2 11 11 C 1.46895 * 125.43487 * 359.96063 * 10 9 7 12 12 O 1.21660 * 119.99659 * 185.56860 * 11 10 9 13 13 N 1.34772 * 119.99961 * 5.56476 * 11 10 9 14 14 C 1.46502 * 119.99796 * 184.75340 * 13 11 10 15 15 C 1.53001 * 109.47094 * 175.01460 * 14 13 11 16 16 C 1.52991 * 109.47405 * 185.00383 * 15 14 13 17 17 H 1.09008 * 109.47411 * 55.00003 * 16 15 14 18 18 O 1.42897 * 109.47242 * 295.00345 * 16 15 14 19 19 C 1.52999 * 109.47558 * 174.99870 * 16 15 14 20 20 C 1.52998 * 117.50237 * 248.75004 * 19 16 15 21 21 C 1.53001 * 117.50114 * 180.08655 * 19 16 15 22 22 C 1.36122 * 109.12549 * 179.97438 * 10 9 7 23 23 C 1.41695 * 107.75007 * 0.02562 * 22 10 9 24 24 C 1.40026 * 133.34842 * 179.97438 * 23 22 10 25 25 C 1.36576 * 119.82925 * 180.02562 * 24 23 22 26 26 C 1.38851 * 120.60163 * 0.02562 * 25 24 23 27 27 C 1.37853 * 120.63578 * 0.21908 * 26 25 24 28 28 C 1.37835 * 125.62428 * 306.21595 * 9 7 2 29 29 H 0.96993 * 120.00049 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99908 * 4.76138 * 13 11 10 31 31 H 1.08991 * 109.47365 * 295.01576 * 14 13 11 32 32 H 1.09004 * 109.46591 * 55.01807 * 14 13 11 33 33 H 1.09003 * 109.46801 * 305.00680 * 15 14 13 34 34 H 1.08999 * 109.47033 * 64.99916 * 15 14 13 35 35 H 0.96700 * 113.99833 * 299.99492 * 18 16 15 36 36 H 1.09005 * 115.54680 * 34.41995 * 19 16 15 37 37 H 1.09000 * 117.49436 * 359.97438 * 20 19 16 38 38 H 1.09000 * 117.50013 * 145.02174 * 20 19 16 39 39 H 1.09004 * 117.49720 * 214.98140 * 21 19 16 40 40 H 1.08995 * 117.49715 * 359.97438 * 21 19 16 41 41 H 1.08001 * 126.11946 * 179.97438 * 22 10 9 42 42 H 1.08000 * 120.07962 * 0.02562 * 24 23 22 43 43 H 1.07997 * 119.69534 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.68773 * 179.97438 * 26 25 24 45 45 H 1.07992 * 120.09917 * 179.68645 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.3913 2.1063 -1.3950 5 1 1.5005 2.6206 0.8011 6 1 3.5930 1.4126 0.5938 7 6 2.0086 -1.2039 -0.0005 8 1 1.4705 -2.1380 -0.0649 9 7 3.3751 -1.2052 0.0806 10 6 4.1256 -1.9009 1.0096 11 6 3.5839 -2.7590 2.0716 12 8 4.3301 -3.2459 2.9001 13 7 2.2604 -3.0070 2.1283 14 6 1.7065 -3.7760 3.2454 15 6 0.1807 -3.8074 3.1360 16 6 -0.4047 -4.5025 4.3668 17 1 -0.0438 -4.0086 5.2691 18 8 0.0017 -5.8724 4.3786 19 6 -1.9319 -4.4240 4.3188 20 6 -2.6269 -3.5402 5.3565 21 6 -2.7089 -5.0645 5.4708 22 6 5.4468 -1.6636 0.7835 23 6 5.5446 -0.7873 -0.3257 24 6 6.6262 -0.2077 -1.0003 25 6 6.3995 0.6186 -2.0639 26 6 5.1044 0.8910 -2.4840 27 6 4.0234 0.3363 -1.8328 28 6 4.2293 -0.5131 -0.7507 29 1 -0.4850 0.8400 0.0004 30 1 1.6747 -2.6763 1.4294 31 1 2.0940 -4.7942 3.2131 32 1 1.9937 -3.3075 4.1868 33 1 -0.2005 -2.7878 3.0788 34 1 -0.1080 -4.3541 2.2383 35 1 -0.2856 -6.3745 3.6038 36 1 -2.3742 -4.4748 3.3238 37 1 -1.9961 -3.0151 6.0737 38 1 -3.5267 -3.0100 5.0444 39 1 -3.6625 -5.5364 5.2337 40 1 -2.1320 -5.5422 6.2626 41 1 6.2724 -2.0698 1.3489 42 1 7.6369 -0.4136 -0.6803 43 1 7.2353 1.0641 -2.5829 44 1 4.9422 1.5469 -3.3265 45 1 3.0196 0.5581 -2.1637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890726309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:06:50 Heat of formation + Delta-G solvation = -3.534917 kcal Electronic energy + Delta-G solvation = -27702.839835 eV Core-core repulsion = 23879.426257 eV Total energy + Delta-G solvation = -3823.413578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.87873 -39.01854 -38.38700 -36.25093 -35.72014 -34.59198 -33.52753 -31.54183 -31.05385 -29.29840 -28.41398 -26.08536 -24.97474 -23.20756 -22.48621 -21.60509 -21.20937 -20.99823 -20.23619 -19.26769 -18.50961 -16.80090 -16.63025 -15.93894 -15.80247 -15.69091 -15.39017 -15.07624 -14.56013 -14.43892 -14.15613 -13.86646 -13.73279 -13.34123 -13.29184 -12.99584 -12.83674 -12.67221 -12.23269 -12.03360 -11.86449 -11.67911 -11.48287 -11.09927 -11.07036 -10.93806 -10.84364 -10.68045 -10.57537 -10.34080 -10.24337 -10.06261 -10.00142 -9.42129 -9.38703 -8.81479 -8.47308 -7.38194 -7.06644 -6.90708 -4.89400 1.52277 2.40375 2.78346 2.96258 3.08327 3.18904 3.54306 3.75735 3.83076 4.08713 4.16002 4.41009 4.45984 4.50072 4.64559 4.75735 4.89200 4.99174 5.13032 5.34040 5.43661 5.47628 5.50724 5.60364 5.62250 5.72654 5.76067 5.82675 5.88037 5.97634 6.04847 6.10266 6.15418 6.26945 6.30543 6.37689 6.53524 6.67411 6.74218 7.04761 7.13475 7.17614 7.24545 7.48880 7.54798 7.59810 7.60783 7.99902 8.24938 8.52888 8.90454 8.96612 10.03501 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.003442 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.937509 B = 8132.844215 C = 9422.882865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.088 3.912 3 Si 0.882 3.118 4 H -0.256 1.256 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.374 4.374 8 H 0.119 0.881 9 N -0.288 5.288 10 C 0.002 3.998 11 C 0.592 3.408 12 O -0.556 6.556 13 N -0.724 5.724 14 C 0.125 3.875 15 C -0.160 4.160 16 C 0.142 3.858 17 H 0.099 0.901 18 O -0.558 6.558 19 C -0.191 4.191 20 C -0.173 4.173 21 C -0.169 4.169 22 C -0.158 4.158 23 C -0.127 4.127 24 C -0.071 4.071 25 C -0.163 4.163 26 C -0.120 4.120 27 C -0.124 4.124 28 C 0.078 3.922 29 H 0.287 0.713 30 H 0.419 0.581 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.374 0.626 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 -3.656 3.057 5.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.126 4.126 3 Si 0.707 3.293 4 H -0.181 1.181 5 H -0.213 1.213 6 H -0.169 1.169 7 C -0.501 4.501 8 H 0.136 0.864 9 N 0.045 4.955 10 C -0.112 4.112 11 C 0.380 3.620 12 O -0.436 6.436 13 N -0.384 5.384 14 C 0.001 3.999 15 C -0.198 4.198 16 C 0.083 3.917 17 H 0.117 0.883 18 O -0.363 6.363 19 C -0.210 4.210 20 C -0.210 4.210 21 C -0.206 4.206 22 C -0.185 4.185 23 C -0.132 4.132 24 C -0.090 4.090 25 C -0.182 4.182 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.036 4.036 29 H 0.098 0.902 30 H 0.265 0.735 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.221 0.779 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.157 0.843 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.898 -3.760 4.249 6.371 hybrid contribution -0.547 0.991 -1.036 1.535 sum -3.445 -2.769 3.212 5.464 Atomic orbital electron populations 1.69576 1.06246 1.29791 1.40822 1.25518 0.95461 0.99636 0.92007 0.86764 0.81309 0.81305 0.79907 1.18058 1.21254 1.16883 1.19019 0.77500 0.96096 1.57436 0.86410 1.40251 1.04850 1.32312 1.18110 1.20362 0.91597 1.04347 0.94928 1.17183 0.82039 0.79353 0.83394 1.90731 1.58911 1.52653 1.41296 1.46730 1.08667 1.55455 1.27512 1.21153 0.92118 0.96419 0.90240 1.22456 0.95483 1.03143 0.98718 1.21399 0.89689 0.82286 0.98334 0.88274 1.86585 1.79696 1.21924 1.48083 1.23084 0.95475 1.06573 0.95840 1.22958 1.02775 0.93404 1.01884 1.22862 1.01493 0.95464 1.00800 1.20523 0.94317 1.03497 1.00154 1.18054 0.92551 1.03007 0.99592 1.20219 0.96864 0.96686 0.95184 1.20373 0.96252 1.02308 0.99313 1.20623 0.92185 1.01123 1.00079 1.20231 0.99468 0.98698 0.95937 1.18553 0.89768 1.00374 0.94872 0.90213 0.73502 0.91575 0.91985 0.89502 0.90877 0.77859 0.87463 0.88593 0.88651 0.88973 0.88457 0.84250 0.86959 0.87102 0.86837 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.38 13.95 55.50 0.77 -19.60 16 2 C 0.09 2.13 5.49 -17.47 -0.10 2.04 16 3 Si 0.88 19.92 23.53 -169.99 -4.00 15.92 16 4 H -0.26 -5.46 6.06 56.52 0.34 -5.12 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.25 -5.97 6.25 56.52 0.35 -5.62 16 7 C -0.37 -9.01 8.30 -15.01 -0.12 -9.13 16 8 H 0.12 2.86 6.45 -52.49 -0.34 2.52 16 9 N -0.29 -6.86 2.41 -56.08 -0.14 -6.99 16 10 C 0.00 0.04 6.77 -82.24 -0.56 -0.52 16 11 C 0.59 13.26 7.77 -12.76 -0.10 13.16 16 12 O -0.56 -13.24 16.85 5.22 0.09 -13.15 16 13 N -0.72 -14.27 5.44 -61.55 -0.33 -14.60 16 14 C 0.12 2.04 5.52 -4.04 -0.02 2.02 16 15 C -0.16 -2.12 4.99 -26.73 -0.13 -2.25 16 16 C 0.14 1.63 3.16 -26.74 -0.08 1.55 16 17 H 0.10 1.18 7.90 -51.92 -0.41 0.77 16 18 O -0.56 -6.48 12.87 -35.23 -0.45 -6.93 16 19 C -0.19 -1.96 5.36 -90.62 -0.49 -2.45 16 20 C -0.17 -1.68 10.18 -26.69 -0.27 -1.95 16 21 C -0.17 -1.57 10.16 -26.69 -0.27 -1.84 16 22 C -0.16 -3.45 10.55 -39.02 -0.41 -3.86 16 23 C -0.13 -2.75 6.16 -106.89 -0.66 -3.41 16 24 C -0.07 -1.30 10.06 -39.51 -0.40 -1.70 16 25 C -0.16 -2.78 9.97 -39.95 -0.40 -3.18 16 26 C -0.12 -2.18 10.02 -39.50 -0.40 -2.58 16 27 C -0.12 -2.63 6.87 -39.41 -0.27 -2.90 16 28 C 0.08 1.79 4.58 -83.83 -0.38 1.41 16 29 H 0.29 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.42 8.51 4.35 -40.82 -0.18 8.33 16 31 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.37 3.16 9.05 45.56 0.41 3.58 16 36 H 0.11 1.08 8.11 -51.93 -0.42 0.66 16 37 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.14 2.78 8.06 -52.49 -0.42 2.35 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.12 2.59 5.69 -52.49 -0.30 2.29 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -28.20 367.32 -9.12 -37.32 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -5.54 Total: 18.09 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -5.06 Total: -15.59 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.30 Total: -41.20 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.37 Total: -20.08 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.00 Total: 15.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.20 -9.12 -37.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890726309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.785 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds