Wall clock time and date at job start Sat Apr 11 2020 02:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31353 * 1 3 3 Si 1.86801 * 119.99761 * 2 1 4 4 H 1.48507 * 109.46865 * 274.90326 * 3 2 1 5 5 H 1.48502 * 109.47015 * 34.90053 * 3 2 1 6 6 H 1.48500 * 109.47159 * 154.90628 * 3 2 1 7 7 C 1.39009 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00166 * 3.92242 * 7 2 1 9 9 N 1.36892 * 119.99465 * 183.92252 * 7 2 1 10 10 C 1.38218 * 125.61735 * 126.21893 * 9 7 2 11 11 C 1.46895 * 125.43487 * 359.96063 * 10 9 7 12 12 O 1.21660 * 119.99659 * 185.56860 * 11 10 9 13 13 N 1.34772 * 119.99961 * 5.56476 * 11 10 9 14 14 C 1.46502 * 119.99796 * 184.75340 * 13 11 10 15 15 C 1.53001 * 109.47094 * 175.01460 * 14 13 11 16 16 C 1.52991 * 109.47405 * 185.00383 * 15 14 13 17 17 H 1.09008 * 109.47411 * 55.00003 * 16 15 14 18 18 O 1.42897 * 109.47242 * 295.00345 * 16 15 14 19 19 C 1.52999 * 109.47558 * 174.99870 * 16 15 14 20 20 C 1.52998 * 117.50237 * 248.75004 * 19 16 15 21 21 C 1.53001 * 117.50114 * 180.08655 * 19 16 15 22 22 C 1.36122 * 109.12549 * 179.97438 * 10 9 7 23 23 C 1.41695 * 107.75007 * 0.02562 * 22 10 9 24 24 C 1.40026 * 133.34842 * 179.97438 * 23 22 10 25 25 C 1.36576 * 119.82925 * 180.02562 * 24 23 22 26 26 C 1.38851 * 120.60163 * 0.02562 * 25 24 23 27 27 C 1.37853 * 120.63578 * 0.21908 * 26 25 24 28 28 C 1.37835 * 125.62428 * 306.21595 * 9 7 2 29 29 H 0.96993 * 120.00049 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99908 * 4.76138 * 13 11 10 31 31 H 1.08991 * 109.47365 * 295.01576 * 14 13 11 32 32 H 1.09004 * 109.46591 * 55.01807 * 14 13 11 33 33 H 1.09003 * 109.46801 * 305.00680 * 15 14 13 34 34 H 1.08999 * 109.47033 * 64.99916 * 15 14 13 35 35 H 0.96700 * 113.99833 * 299.99492 * 18 16 15 36 36 H 1.09005 * 115.54680 * 34.41995 * 19 16 15 37 37 H 1.09000 * 117.49436 * 359.97438 * 20 19 16 38 38 H 1.09000 * 117.50013 * 145.02174 * 20 19 16 39 39 H 1.09004 * 117.49720 * 214.98140 * 21 19 16 40 40 H 1.08995 * 117.49715 * 359.97438 * 21 19 16 41 41 H 1.08001 * 126.11946 * 179.97438 * 22 10 9 42 42 H 1.08000 * 120.07962 * 0.02562 * 24 23 22 43 43 H 1.07997 * 119.69534 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.68773 * 179.97438 * 26 25 24 45 45 H 1.07992 * 120.09917 * 179.68645 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.3913 2.1063 -1.3950 5 1 1.5005 2.6206 0.8011 6 1 3.5930 1.4126 0.5938 7 6 2.0086 -1.2039 -0.0005 8 1 1.4705 -2.1380 -0.0649 9 7 3.3751 -1.2052 0.0806 10 6 4.1256 -1.9009 1.0096 11 6 3.5839 -2.7590 2.0716 12 8 4.3301 -3.2459 2.9001 13 7 2.2604 -3.0070 2.1283 14 6 1.7065 -3.7760 3.2454 15 6 0.1807 -3.8074 3.1360 16 6 -0.4047 -4.5025 4.3668 17 1 -0.0438 -4.0086 5.2691 18 8 0.0017 -5.8724 4.3786 19 6 -1.9319 -4.4240 4.3188 20 6 -2.6269 -3.5402 5.3565 21 6 -2.7089 -5.0645 5.4708 22 6 5.4468 -1.6636 0.7835 23 6 5.5446 -0.7873 -0.3257 24 6 6.6262 -0.2077 -1.0003 25 6 6.3995 0.6186 -2.0639 26 6 5.1044 0.8910 -2.4840 27 6 4.0234 0.3363 -1.8328 28 6 4.2293 -0.5131 -0.7507 29 1 -0.4850 0.8400 0.0004 30 1 1.6747 -2.6763 1.4294 31 1 2.0940 -4.7942 3.2131 32 1 1.9937 -3.3075 4.1868 33 1 -0.2005 -2.7878 3.0788 34 1 -0.1080 -4.3541 2.2383 35 1 -0.2856 -6.3745 3.6038 36 1 -2.3742 -4.4748 3.3238 37 1 -1.9961 -3.0151 6.0737 38 1 -3.5267 -3.0100 5.0444 39 1 -3.6625 -5.5364 5.2337 40 1 -2.1320 -5.5422 6.2626 41 1 6.2724 -2.0698 1.3489 42 1 7.6369 -0.4136 -0.6803 43 1 7.2353 1.0641 -2.5829 44 1 4.9422 1.5469 -3.3265 45 1 3.0196 0.5581 -2.1637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890726309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:06:47 Heat of formation + Delta-G solvation = -21.053532 kcal Electronic energy + Delta-G solvation = -27703.599499 eV Core-core repulsion = 23879.426257 eV Total energy + Delta-G solvation = -3824.173243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.52859 -40.41922 -39.57225 -37.80896 -36.72025 -35.99477 -35.27088 -33.21047 -32.37656 -30.84138 -29.96696 -27.32621 -26.72150 -24.64442 -23.25684 -22.90285 -22.78077 -22.06161 -21.64295 -20.94037 -20.23085 -18.31920 -17.67156 -17.59971 -17.15921 -16.93458 -16.76732 -16.43580 -16.04231 -15.98538 -15.61747 -15.36309 -15.03125 -14.90239 -14.84842 -14.41702 -14.27781 -13.90723 -13.70270 -13.66187 -13.19207 -13.06165 -12.60707 -12.50417 -12.41790 -12.37889 -12.28125 -11.93201 -11.86264 -11.67313 -11.49925 -11.32035 -11.15008 -11.11673 -10.77342 -10.46733 -10.09029 -9.01468 -8.84309 -8.59219 -6.73556 -0.07221 0.88029 1.07295 1.18257 1.29199 1.38329 2.00911 2.18766 2.35687 2.48802 2.64860 2.79431 3.10145 3.46704 3.61510 3.80380 3.92913 3.97508 4.00227 4.08897 4.11016 4.26402 4.33879 4.36215 4.45439 4.56155 4.59943 4.63359 4.65819 4.77945 4.79117 4.98659 4.99973 5.06428 5.08554 5.08751 5.22314 5.23314 5.29919 5.40254 5.46361 5.64874 5.68835 5.77662 5.94450 6.01355 6.37067 6.53534 6.73879 6.82535 7.19269 7.21777 8.22091 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.003442 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.937509 B = 8132.844215 C = 9422.882865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.063 3.937 3 Si 0.922 3.078 4 H -0.235 1.235 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.375 4.375 8 H 0.105 0.895 9 N -0.306 5.306 10 C -0.028 4.028 11 C 0.586 3.414 12 O -0.579 6.579 13 N -0.719 5.719 14 C 0.124 3.876 15 C -0.147 4.147 16 C 0.152 3.848 17 H 0.094 0.906 18 O -0.568 6.568 19 C -0.199 4.199 20 C -0.178 4.178 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.070 4.070 25 C -0.154 4.154 26 C -0.102 4.102 27 C -0.160 4.160 28 C 0.057 3.943 29 H 0.292 0.708 30 H 0.416 0.584 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.388 0.612 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -2.812 1.935 3.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.149 4.149 3 Si 0.747 3.253 4 H -0.159 1.159 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.502 4.502 8 H 0.122 0.878 9 N 0.026 4.974 10 C -0.141 4.141 11 C 0.374 3.626 12 O -0.461 6.461 13 N -0.376 5.376 14 C 0.001 3.999 15 C -0.185 4.185 16 C 0.092 3.908 17 H 0.112 0.888 18 O -0.375 6.375 19 C -0.217 4.217 20 C -0.215 4.215 21 C -0.195 4.195 22 C -0.184 4.184 23 C -0.153 4.153 24 C -0.089 4.089 25 C -0.173 4.173 26 C -0.122 4.122 27 C -0.180 4.180 28 C -0.056 4.056 29 H 0.103 0.897 30 H 0.262 0.738 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.237 0.763 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.171 0.829 42 H 0.163 0.837 43 H 0.175 0.825 44 H 0.167 0.833 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.831 -2.926 3.107 4.644 hybrid contribution -0.729 0.718 -0.773 1.282 sum -2.560 -2.208 2.334 4.108 Atomic orbital electron populations 1.69602 1.06705 1.30444 1.42120 1.25884 0.95850 1.01091 0.92027 0.86192 0.78971 0.79566 0.80576 1.15925 1.21366 1.19693 1.18917 0.78128 0.95715 1.57406 0.87760 1.40255 1.04637 1.33477 1.19033 1.20619 0.92391 1.05286 0.95837 1.17289 0.82717 0.79363 0.83214 1.90693 1.59468 1.53804 1.42121 1.46777 1.07880 1.54989 1.27992 1.21321 0.94097 0.95734 0.88781 1.22369 0.93071 1.02810 1.00269 1.21237 0.90561 0.82094 0.96882 0.88819 1.86556 1.80020 1.21874 1.49095 1.23001 0.94449 1.07817 0.96443 1.23052 1.02948 0.93927 1.01586 1.22905 1.01703 0.95105 0.99809 1.20813 0.94235 1.03123 1.00230 1.18437 0.93237 1.03648 0.99936 1.20681 0.97458 0.95853 0.94905 1.20910 0.97131 1.00873 0.98396 1.21170 0.91859 0.99488 0.99695 1.20384 1.00259 1.00487 0.96845 1.19005 0.90358 1.00703 0.95541 0.89738 0.73834 0.91465 0.92645 0.90815 0.90066 0.76259 0.87197 0.88660 0.87963 0.87571 0.88663 0.82867 0.83674 0.82464 0.83262 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.64 13.95 21.67 0.30 -42.34 16 2 C 0.06 3.13 5.49 84.95 0.47 3.60 16 3 Si 0.92 41.35 23.53 68.60 1.61 42.96 16 4 H -0.24 -9.64 6.06 99.48 0.60 -9.03 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -13.34 6.25 99.48 0.62 -12.72 16 7 C -0.38 -18.69 8.30 84.09 0.70 -18.00 16 8 H 0.11 5.33 6.45 -2.91 -0.02 5.31 16 9 N -0.31 -14.92 2.41 -331.33 -0.80 -15.71 16 10 C -0.03 -1.36 6.77 39.91 0.27 -1.09 16 11 C 0.59 27.21 7.77 86.51 0.67 27.88 16 12 O -0.58 -28.36 16.85 -4.22 -0.07 -28.43 16 13 N -0.72 -29.56 5.44 -466.89 -2.54 -32.10 16 14 C 0.12 4.19 5.52 86.38 0.48 4.66 16 15 C -0.15 -3.98 4.99 30.59 0.15 -3.83 16 16 C 0.15 3.46 3.16 30.59 0.10 3.56 16 17 H 0.09 2.24 7.90 -2.38 -0.02 2.22 16 18 O -0.57 -12.85 12.87 -148.98 -1.92 -14.77 16 19 C -0.20 -3.93 5.36 -10.79 -0.06 -3.98 16 20 C -0.18 -3.31 10.18 30.62 0.31 -2.99 16 21 C -0.16 -2.72 10.16 30.62 0.31 -2.41 16 22 C -0.16 -6.88 10.55 22.63 0.24 -6.64 16 23 C -0.15 -6.25 6.16 -21.34 -0.13 -6.38 16 24 C -0.07 -2.34 10.06 22.31 0.22 -2.11 16 25 C -0.15 -4.50 9.97 22.03 0.22 -4.28 16 26 C -0.10 -3.33 10.02 22.33 0.22 -3.11 16 27 C -0.16 -6.58 6.87 22.38 0.15 -6.43 16 28 C 0.06 2.60 4.58 39.06 0.18 2.78 16 29 H 0.29 13.51 8.31 -92.71 -0.77 12.74 16 30 H 0.42 17.77 4.35 -92.71 -0.40 17.37 16 31 H 0.07 2.26 7.96 -2.39 -0.02 2.25 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.39 6.22 9.05 -74.06 -0.67 5.55 16 36 H 0.11 2.13 8.11 -2.38 -0.02 2.11 16 37 H 0.09 1.77 8.05 -2.39 -0.02 1.75 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.15 6.08 8.06 -2.91 -0.02 6.06 16 42 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 43 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 44 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 45 H 0.11 4.70 5.69 -2.91 -0.02 4.68 16 Total: -1.00 -61.92 367.32 0.86 -61.06 By element: Atomic # 1 Polarization: 48.35 SS G_CDS: -0.23 Total: 48.12 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 4.51 Total: -18.78 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -3.03 Total: -90.16 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -1.99 Total: -43.20 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.61 Total: 42.96 kcal Total: -61.92 0.86 -61.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890726309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.004 kcal (2) G-P(sol) polarization free energy of solvation -61.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds