Wall clock time and date at job start Sat Apr 11 2020 02:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47058 * 285.86513 * 3 2 1 5 5 N 1.46505 * 109.47147 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99994 * 270.00384 * 5 4 3 7 7 C 1.50700 * 109.46943 * 270.00115 * 6 5 4 8 8 H 1.08002 * 120.00426 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00025 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99710 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00275 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46937 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47435 * 119.99458 * 11 9 7 14 14 H 1.48499 * 109.46908 * 239.99850 * 11 9 7 15 15 C 1.34770 * 119.99970 * 90.00263 * 5 4 3 16 16 O 1.21281 * 119.99992 * 179.97438 * 15 5 4 17 17 C 1.50699 * 120.00273 * 0.02562 * 15 5 4 18 18 C 1.52993 * 109.47433 * 179.97438 * 17 15 5 19 19 C 1.53002 * 109.47281 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47361 * 180.02562 * 19 18 17 21 21 O 1.21250 * 119.99733 * 0.02562 * 20 19 18 22 22 C 1.47164 * 119.99851 * 180.02562 * 20 19 18 23 23 C 1.39855 * 120.16680 * 180.02562 * 22 20 19 24 24 C 1.37890 * 119.82316 * 179.97438 * 23 22 20 25 25 C 1.38404 * 120.17220 * 359.97438 * 24 23 22 26 26 C 1.38409 * 120.34828 * 0.04376 * 25 24 23 27 27 C 1.37888 * 120.17293 * 359.95823 * 26 25 24 28 28 H 1.09002 * 109.47062 * 165.86775 * 3 2 1 29 29 H 1.08996 * 109.47245 * 45.87196 * 3 2 1 30 30 H 1.09005 * 109.47068 * 60.00733 * 4 3 2 31 31 H 1.08996 * 109.47651 * 300.00436 * 4 3 2 32 32 H 1.09001 * 109.47223 * 29.99596 * 6 5 4 33 33 H 1.08999 * 109.47269 * 150.00219 * 6 5 4 34 34 H 0.97002 * 120.00182 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.46863 * 59.99868 * 17 15 5 36 36 H 1.08998 * 109.46966 * 300.00639 * 17 15 5 37 37 H 1.09001 * 109.47026 * 60.00186 * 18 17 15 38 38 H 1.08995 * 109.47248 * 300.00389 * 18 17 15 39 39 H 1.09001 * 109.46706 * 60.00274 * 19 18 17 40 40 H 1.08995 * 109.47529 * 300.00501 * 19 18 17 41 41 H 1.07999 * 120.09085 * 359.69867 * 23 22 20 42 42 H 1.08000 * 119.91186 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.82754 * 180.02562 * 25 24 23 44 44 H 1.07996 * 119.91489 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.08508 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.3934 1.3875 5 7 4.5832 -0.3922 1.3877 6 6 5.3168 -1.6119 1.0407 7 6 5.5685 -2.4188 2.2883 8 1 5.2175 -2.0589 3.2442 9 6 6.2477 -3.6162 2.2097 10 7 6.6756 -4.0542 1.0458 11 14 6.5591 -4.6168 3.7560 12 1 5.9804 -3.9107 4.9273 13 1 5.9232 -5.9515 3.6184 14 1 8.0217 -4.7830 3.9519 15 6 5.2561 0.7310 1.7071 16 8 6.4689 0.7319 1.7077 17 6 4.5015 1.9855 2.0646 18 6 5.4947 3.1048 2.3833 19 6 4.7286 4.3786 2.7456 20 6 5.7069 5.4813 3.0590 21 8 6.8992 5.2693 2.9980 22 6 5.2151 6.8153 3.4390 23 6 6.1199 7.8413 3.7300 24 6 5.6513 9.0886 4.0847 25 6 4.2896 9.3267 4.1527 26 6 3.3878 8.3164 3.8665 27 6 3.8407 7.0637 3.5103 28 1 2.9709 0.9974 -0.2509 29 1 2.9717 -0.7147 -0.7376 30 1 2.7554 -1.3902 1.6384 31 1 2.7545 0.3219 2.1251 32 1 4.7283 -2.2026 0.3386 33 1 6.2691 -1.3452 0.5823 34 1 7.1531 -4.8967 0.9903 35 1 3.8753 1.7968 2.9365 36 1 3.8743 2.2841 1.2246 37 1 6.1213 3.2936 1.5116 38 1 6.1215 2.8059 3.2234 39 1 4.1017 4.1900 3.6172 40 1 4.1020 4.6773 1.9053 41 1 7.1827 7.6559 3.6814 42 1 6.3487 9.8821 4.3094 43 1 3.9287 10.3059 4.4307 44 1 2.3268 8.5098 3.9221 45 1 3.1359 6.2763 3.2877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900329031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:08:05 Heat of formation + Delta-G solvation = -34.046744 kcal Electronic energy + Delta-G solvation = -26176.476978 eV Core-core repulsion = 22351.740307 eV Total energy + Delta-G solvation = -3824.736671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.32143 -39.29630 -38.41965 -36.87442 -35.28868 -34.26098 -32.84909 -31.88251 -31.33391 -30.82429 -29.01980 -27.01252 -24.62764 -23.98053 -23.22661 -22.65679 -21.39503 -19.83893 -18.48874 -17.67124 -17.49706 -16.49239 -16.45871 -16.08477 -15.96763 -15.75916 -15.34272 -14.78153 -14.67659 -14.66278 -14.28619 -13.99498 -13.89221 -13.84906 -13.37417 -12.99814 -12.77940 -12.44274 -12.41298 -12.30248 -12.12129 -12.02580 -11.78483 -11.63350 -11.52607 -11.28860 -11.20088 -10.98921 -10.87516 -10.64045 -10.58330 -10.17785 -9.86688 -9.67376 -9.40062 -9.34383 -8.95102 -8.46376 -7.81663 -6.07663 -4.11991 0.35106 0.97351 2.19120 2.72251 2.80027 3.28907 3.33708 3.37678 3.41736 3.45292 3.59458 3.79655 4.22442 4.40886 4.42974 4.53377 4.64187 4.77324 4.90214 4.97093 4.99590 5.00618 5.10231 5.14513 5.19168 5.27662 5.34818 5.42509 5.48135 5.54225 5.58377 5.63968 5.69436 5.86802 5.92564 6.02936 6.07419 6.09353 6.21708 6.47188 6.48957 6.96424 7.36981 7.38876 7.45781 7.56436 7.88782 8.19178 8.29868 8.86753 9.02857 9.53579 11.00517 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.002470 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.973525 B =11333.125063 C =13048.230186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.218 3.782 3 C -0.051 4.051 4 C 0.119 3.881 5 N -0.600 5.600 6 C 0.244 3.756 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.505 3.495 16 O -0.530 6.530 17 C -0.144 4.144 18 C -0.096 4.096 19 C -0.166 4.166 20 C 0.392 3.608 21 O -0.442 6.442 22 C -0.167 4.167 23 C -0.064 4.064 24 C -0.134 4.134 25 C -0.093 4.093 26 C -0.134 4.134 27 C -0.074 4.074 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 24.161 3.032 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.100 4.100 3 C -0.093 4.093 4 C -0.008 4.008 5 N -0.332 5.332 6 C 0.125 3.875 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.292 3.708 16 O -0.406 6.406 17 C -0.184 4.184 18 C -0.134 4.134 19 C -0.203 4.203 20 C 0.268 3.732 21 O -0.316 6.316 22 C -0.168 4.168 23 C -0.082 4.082 24 C -0.152 4.152 25 C -0.111 4.111 26 C -0.152 4.152 27 C -0.092 4.092 28 H 0.125 0.875 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.176 23.861 2.907 25.729 hybrid contribution 0.406 -0.618 0.821 1.105 sum -8.771 23.243 3.728 25.121 Atomic orbital electron populations 1.81208 1.13066 1.09365 1.08797 1.29133 0.95118 0.92761 0.93015 1.19919 0.81258 1.05621 1.02459 1.21281 0.82349 1.03843 0.93309 1.48235 1.04759 1.12731 1.67434 1.19339 0.92609 0.79332 0.96246 1.21456 1.36487 1.04556 0.94053 0.92366 1.24927 0.95346 0.97566 0.96247 1.69928 1.38317 1.21433 1.23591 0.86465 0.78119 0.79752 0.83222 1.19805 1.21009 1.20890 1.20381 0.88200 0.84423 0.77841 1.90710 1.13925 1.84446 1.51567 1.21772 0.99340 0.94378 1.02887 1.21144 0.97143 0.91143 1.03950 1.22087 0.99252 0.95225 1.03772 1.22558 0.89856 0.87874 0.72872 1.90567 1.18741 1.83255 1.39019 1.20668 0.94441 0.96103 1.05552 1.21498 1.00358 0.92098 0.94279 1.21184 0.95849 0.97129 1.01007 1.21438 0.93399 0.99250 0.97015 1.21176 1.00104 0.93233 1.00719 1.21511 0.94407 0.97322 0.95947 0.87538 0.86550 0.88915 0.90593 0.94817 0.93597 0.92746 0.89306 0.89540 0.90517 0.90432 0.88252 0.88285 0.84861 0.85449 0.85665 0.85377 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.32 18.54 42.15 0.78 -5.54 16 2 C 0.22 2.50 15.43 -20.76 -0.32 2.18 16 3 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 4 C 0.12 1.52 5.17 -4.04 -0.02 1.50 16 5 N -0.60 -10.84 2.46 -175.06 -0.43 -11.27 16 6 C 0.24 5.79 5.16 -5.19 -0.03 5.76 16 7 C -0.53 -14.15 9.39 -34.44 -0.32 -14.47 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 11 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.50 9.18 7.67 -10.99 -0.08 9.09 16 16 O -0.53 -12.48 15.56 5.56 0.09 -12.39 16 17 C -0.14 -1.71 4.25 -27.89 -0.12 -1.82 16 18 C -0.10 -1.21 3.79 -26.73 -0.10 -1.31 16 19 C -0.17 -1.44 4.31 -27.88 -0.12 -1.56 16 20 C 0.39 4.30 7.12 -30.69 -0.22 4.09 16 21 O -0.44 -6.59 15.98 5.58 0.09 -6.50 16 22 C -0.17 -1.54 5.87 -105.07 -0.62 -2.16 16 23 C -0.06 -0.58 9.60 -39.10 -0.38 -0.96 16 24 C -0.13 -0.94 10.03 -39.65 -0.40 -1.34 16 25 C -0.09 -0.56 10.04 -39.46 -0.40 -0.96 16 26 C -0.13 -0.81 10.03 -39.65 -0.40 -1.21 16 27 C -0.07 -0.51 9.47 -39.11 -0.37 -0.88 16 28 H 0.11 0.83 7.22 -51.93 -0.38 0.45 16 29 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 31 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.09 0.89 7.40 -51.93 -0.38 0.50 16 36 H 0.09 0.75 7.19 -51.93 -0.37 0.37 16 37 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 38 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 39 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 40 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 41 H 0.13 1.24 7.65 -52.49 -0.40 0.84 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 45 H 0.13 0.61 7.05 -52.49 -0.37 0.24 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -35.88 392.74 -8.38 -44.26 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.38 Total: -2.76 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -4.16 Total: -3.12 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 1.09 Total: -41.79 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.18 Total: -18.90 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.88 -8.38 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900329031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.210 kcal (2) G-P(sol) polarization free energy of solvation -35.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds