Wall clock time and date at job start Sat Apr 11 2020 02:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47058 * 285.86513 * 3 2 1 5 5 N 1.46505 * 109.47147 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99994 * 270.00384 * 5 4 3 7 7 C 1.50700 * 109.46943 * 270.00115 * 6 5 4 8 8 H 1.08002 * 120.00426 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00025 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99710 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00275 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46937 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47435 * 119.99458 * 11 9 7 14 14 H 1.48499 * 109.46908 * 239.99850 * 11 9 7 15 15 C 1.34770 * 119.99970 * 90.00263 * 5 4 3 16 16 O 1.21281 * 119.99992 * 179.97438 * 15 5 4 17 17 C 1.50699 * 120.00273 * 0.02562 * 15 5 4 18 18 C 1.52993 * 109.47433 * 179.97438 * 17 15 5 19 19 C 1.53002 * 109.47281 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47361 * 180.02562 * 19 18 17 21 21 O 1.21250 * 119.99733 * 0.02562 * 20 19 18 22 22 C 1.47164 * 119.99851 * 180.02562 * 20 19 18 23 23 C 1.39855 * 120.16680 * 180.02562 * 22 20 19 24 24 C 1.37890 * 119.82316 * 179.97438 * 23 22 20 25 25 C 1.38404 * 120.17220 * 359.97438 * 24 23 22 26 26 C 1.38409 * 120.34828 * 0.04376 * 25 24 23 27 27 C 1.37888 * 120.17293 * 359.95823 * 26 25 24 28 28 H 1.09002 * 109.47062 * 165.86775 * 3 2 1 29 29 H 1.08996 * 109.47245 * 45.87196 * 3 2 1 30 30 H 1.09005 * 109.47068 * 60.00733 * 4 3 2 31 31 H 1.08996 * 109.47651 * 300.00436 * 4 3 2 32 32 H 1.09001 * 109.47223 * 29.99596 * 6 5 4 33 33 H 1.08999 * 109.47269 * 150.00219 * 6 5 4 34 34 H 0.97002 * 120.00182 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.46863 * 59.99868 * 17 15 5 36 36 H 1.08998 * 109.46966 * 300.00639 * 17 15 5 37 37 H 1.09001 * 109.47026 * 60.00186 * 18 17 15 38 38 H 1.08995 * 109.47248 * 300.00389 * 18 17 15 39 39 H 1.09001 * 109.46706 * 60.00274 * 19 18 17 40 40 H 1.08995 * 109.47529 * 300.00501 * 19 18 17 41 41 H 1.07999 * 120.09085 * 359.69867 * 23 22 20 42 42 H 1.08000 * 119.91186 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.82754 * 180.02562 * 25 24 23 44 44 H 1.07996 * 119.91489 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.08508 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.3934 1.3875 5 7 4.5832 -0.3922 1.3877 6 6 5.3168 -1.6119 1.0407 7 6 5.5685 -2.4188 2.2883 8 1 5.2175 -2.0589 3.2442 9 6 6.2477 -3.6162 2.2097 10 7 6.6756 -4.0542 1.0458 11 14 6.5591 -4.6168 3.7560 12 1 5.9804 -3.9107 4.9273 13 1 5.9232 -5.9515 3.6184 14 1 8.0217 -4.7830 3.9519 15 6 5.2561 0.7310 1.7071 16 8 6.4689 0.7319 1.7077 17 6 4.5015 1.9855 2.0646 18 6 5.4947 3.1048 2.3833 19 6 4.7286 4.3786 2.7456 20 6 5.7069 5.4813 3.0590 21 8 6.8992 5.2693 2.9980 22 6 5.2151 6.8153 3.4390 23 6 6.1199 7.8413 3.7300 24 6 5.6513 9.0886 4.0847 25 6 4.2896 9.3267 4.1527 26 6 3.3878 8.3164 3.8665 27 6 3.8407 7.0637 3.5103 28 1 2.9709 0.9974 -0.2509 29 1 2.9717 -0.7147 -0.7376 30 1 2.7554 -1.3902 1.6384 31 1 2.7545 0.3219 2.1251 32 1 4.7283 -2.2026 0.3386 33 1 6.2691 -1.3452 0.5823 34 1 7.1531 -4.8967 0.9903 35 1 3.8753 1.7968 2.9365 36 1 3.8743 2.2841 1.2246 37 1 6.1213 3.2936 1.5116 38 1 6.1215 2.8059 3.2234 39 1 4.1017 4.1900 3.6172 40 1 4.1020 4.6773 1.9053 41 1 7.1827 7.6559 3.6814 42 1 6.3487 9.8821 4.3094 43 1 3.9287 10.3059 4.4307 44 1 2.3268 8.5098 3.9221 45 1 3.1359 6.2763 3.2877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900329031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:08:01 Heat of formation + Delta-G solvation = -55.551676 kcal Electronic energy + Delta-G solvation = -26177.409502 eV Core-core repulsion = 22351.740307 eV Total energy + Delta-G solvation = -3825.669194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -41.10373 -40.63610 -39.10375 -37.94215 -36.67268 -35.33530 -34.74259 -32.54541 -32.08995 -31.84412 -30.17058 -28.56186 -25.66984 -25.24176 -24.34083 -23.41272 -22.38310 -20.57249 -19.80520 -18.78087 -18.31782 -18.17695 -17.75118 -17.09657 -16.89622 -16.60455 -16.42260 -16.06725 -15.86470 -15.59316 -15.20839 -14.97465 -14.87306 -14.53618 -14.36046 -14.23898 -14.05251 -13.59242 -13.48228 -13.45514 -13.31557 -12.97005 -12.82265 -12.70567 -12.64411 -12.56024 -12.49436 -12.27360 -12.16095 -11.92188 -11.85177 -11.63360 -11.55082 -10.72925 -10.59342 -10.42478 -9.90813 -9.89512 -9.42360 -8.17920 -6.30083 -0.25991 0.47091 1.38027 1.41041 1.51052 1.51324 1.75626 1.90540 1.98933 2.34247 2.46659 2.91166 3.02107 3.12935 3.23772 3.78103 3.91768 4.06425 4.11109 4.13340 4.15131 4.21015 4.22367 4.27227 4.52385 4.53271 4.57135 4.74037 4.75507 4.77154 4.86449 4.91470 5.00242 5.11182 5.12371 5.20672 5.25525 5.36655 5.41254 5.48237 5.53365 5.55142 5.64030 5.91833 6.00745 6.14433 6.61495 6.67049 6.78330 6.87237 7.35970 7.60553 8.88871 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.002470 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.973525 B =11333.125063 C =13048.230186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.248 3.752 3 C -0.039 4.039 4 C 0.113 3.887 5 N -0.600 5.600 6 C 0.257 3.743 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.007 3.993 10 N -0.927 5.927 11 Si 0.958 3.042 12 H -0.267 1.267 13 H -0.272 1.272 14 H -0.287 1.287 15 C 0.494 3.506 16 O -0.599 6.599 17 C -0.127 4.127 18 C -0.093 4.093 19 C -0.156 4.156 20 C 0.389 3.611 21 O -0.503 6.503 22 C -0.191 4.191 23 C -0.090 4.090 24 C -0.142 4.142 25 C -0.090 4.090 26 C -0.136 4.136 27 C -0.068 4.068 28 H 0.141 0.859 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.034 0.966 33 H -0.001 1.001 34 H 0.265 0.735 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.112 0.888 42 H 0.141 0.859 43 H 0.152 0.848 44 H 0.159 0.841 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.920 26.135 4.001 29.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.069 4.069 3 C -0.080 4.080 4 C -0.011 4.011 5 N -0.331 5.331 6 C 0.136 3.864 7 C -0.576 4.576 8 H 0.072 0.928 9 C -0.192 4.192 10 N -0.567 5.567 11 Si 0.784 3.216 12 H -0.191 1.191 13 H -0.197 1.197 14 H -0.213 1.213 15 C 0.284 3.716 16 O -0.480 6.480 17 C -0.166 4.166 18 C -0.132 4.132 19 C -0.192 4.192 20 C 0.270 3.730 21 O -0.381 6.381 22 C -0.192 4.192 23 C -0.108 4.108 24 C -0.160 4.160 25 C -0.108 4.108 26 C -0.153 4.153 27 C -0.085 4.085 28 H 0.159 0.841 29 H 0.133 0.867 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.052 0.948 33 H 0.017 0.983 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.131 0.869 42 H 0.159 0.841 43 H 0.170 0.830 44 H 0.176 0.824 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.289 25.855 3.881 29.328 hybrid contribution 1.663 -1.155 0.519 2.090 sum -11.626 24.700 4.400 27.651 Atomic orbital electron populations 1.81260 1.14387 1.11037 1.10112 1.29112 0.94864 0.91286 0.91685 1.19840 0.80105 1.07536 1.00491 1.21549 0.78743 1.04640 0.96179 1.48135 1.06933 1.10978 1.67033 1.18774 0.91398 0.81356 0.94869 1.21798 1.36061 1.04880 0.94833 0.92818 1.25766 0.95328 0.98938 0.99120 1.70035 1.39221 1.21975 1.25504 0.85500 0.77617 0.78696 0.79805 1.19103 1.19701 1.21314 1.21609 0.87822 0.86005 0.76178 1.90687 1.17312 1.85656 1.54313 1.21814 0.98781 0.90020 1.06033 1.21027 0.97260 0.93689 1.01186 1.22121 0.98574 0.91894 1.06614 1.23192 0.89426 0.89318 0.71045 1.90558 1.21164 1.84269 1.42111 1.20657 0.95851 0.95145 1.07512 1.21553 0.99768 0.93571 0.95951 1.21399 0.97131 0.96584 1.00890 1.21841 0.92759 1.00665 0.95528 1.21605 1.01637 0.92647 0.99444 1.21848 0.93358 0.98658 0.94676 0.84094 0.86749 0.90240 0.86694 0.94828 0.98329 0.92635 0.85884 0.84600 0.93534 0.94450 0.84849 0.84258 0.86941 0.84101 0.83002 0.82368 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.52 18.54 20.01 0.37 -12.15 16 2 C 0.25 4.83 15.43 89.44 1.38 6.21 16 3 C -0.04 -0.63 6.03 28.79 0.17 -0.45 16 4 C 0.11 2.55 5.17 86.38 0.45 3.00 16 5 N -0.60 -21.25 2.46 -826.16 -2.03 -23.28 16 6 C 0.26 12.63 5.16 85.63 0.44 13.07 16 7 C -0.54 -29.45 9.39 25.60 0.24 -29.21 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.01 0.41 5.46 84.66 0.46 0.87 16 10 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 11 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 15 C 0.49 17.77 7.67 87.66 0.67 18.44 16 16 O -0.60 -29.72 15.56 -3.03 -0.05 -29.77 16 17 C -0.13 -2.58 4.25 29.85 0.13 -2.45 16 18 C -0.09 -2.30 3.79 30.59 0.12 -2.18 16 19 C -0.16 -2.20 4.31 29.85 0.13 -2.07 16 20 C 0.39 8.51 7.12 28.03 0.20 8.71 16 21 O -0.50 -16.33 15.98 -2.94 -0.05 -16.37 16 22 C -0.19 -3.34 5.87 -20.15 -0.12 -3.46 16 23 C -0.09 -1.69 9.60 22.58 0.22 -1.47 16 24 C -0.14 -1.86 10.03 22.23 0.22 -1.64 16 25 C -0.09 -0.81 10.04 22.35 0.22 -0.59 16 26 C -0.14 -1.07 10.03 22.23 0.22 -0.85 16 27 C -0.07 -0.68 9.47 22.58 0.21 -0.47 16 28 H 0.14 1.41 7.22 -2.39 -0.02 1.39 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.05 8.07 -2.38 -0.02 2.03 16 31 H 0.12 1.74 6.44 -2.39 -0.02 1.72 16 32 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 33 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 34 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.12 1.76 7.40 -2.39 -0.02 1.75 16 36 H 0.14 1.48 7.19 -2.39 -0.02 1.46 16 37 H 0.05 1.40 8.06 -2.39 -0.02 1.38 16 38 H 0.04 1.20 8.06 -2.39 -0.02 1.18 16 39 H 0.13 1.06 8.09 -2.39 -0.02 1.04 16 40 H 0.14 0.93 8.09 -2.39 -0.02 0.91 16 41 H 0.11 2.44 7.65 -2.91 -0.02 2.41 16 42 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.15 0.52 8.06 -2.91 -0.02 0.50 16 44 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 45 H 0.16 0.54 7.05 -2.91 -0.02 0.52 16 Total: -1.00 -88.02 392.74 6.92 -81.10 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 0.99 Total: 3.08 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.37 Total: 5.47 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -1.37 Total: -89.94 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.09 Total: -46.14 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -88.02 6.92 -81.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900329031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.549 kcal (2) G-P(sol) polarization free energy of solvation -88.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds