Wall clock time and date at job start Sat Apr 11 2020 02:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86798 * 119.99718 * 2 1 4 4 H 1.48495 * 109.47290 * 274.98290 * 3 2 1 5 5 H 1.48506 * 109.47090 * 34.98441 * 3 2 1 6 6 H 1.48508 * 109.46912 * 154.98100 * 3 2 1 7 7 C 1.39896 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00151 * 162.12152 * 7 2 1 9 9 C 1.41154 * 119.99890 * 342.11766 * 7 2 1 10 10 C 1.40868 * 120.16386 * 154.11488 * 9 7 2 11 11 C 1.36371 * 119.82985 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16768 * 0.27488 * 11 10 9 13 13 N 1.39244 * 119.83190 * 179.72512 * 12 11 10 14 14 C 1.34779 * 119.99936 * 34.05604 * 13 12 11 15 15 O 1.21581 * 120.00287 * 5.32105 * 14 13 12 16 16 N 1.34778 * 120.00079 * 185.32731 * 14 13 12 17 17 C 1.47054 * 120.58321 * 6.93052 * 16 14 13 18 18 C 1.53343 * 108.82552 * 124.99151 * 17 16 14 19 19 C 1.51255 * 108.81294 * 51.11397 * 18 17 16 20 20 O 1.20754 * 120.86509 * 125.43293 * 19 18 17 21 21 C 1.51500 * 118.27715 * 305.45921 * 19 18 17 22 22 C 1.46445 * 120.58930 * 186.66183 * 16 14 13 23 23 C 1.53267 * 113.69914 * 102.28670 * 22 16 14 24 24 C 1.53872 * 86.92565 * 219.89033 * 23 22 16 25 25 C 1.53233 * 113.75862 * 4.03450 * 22 16 14 26 26 C 1.39479 * 120.33020 * 359.44955 * 12 11 10 27 27 C 1.36374 * 120.17178 * 0.54936 * 26 12 11 28 28 H 0.96993 * 120.00521 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.08569 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.91371 * 180.02562 * 11 10 9 31 31 H 0.96996 * 120.00078 * 214.05646 * 13 12 11 32 32 H 1.08995 * 109.58163 * 244.79553 * 17 16 14 33 33 H 1.09002 * 109.58047 * 5.06082 * 17 16 14 34 34 H 1.09004 * 109.58165 * 170.91332 * 18 17 16 35 35 H 1.09003 * 109.58152 * 291.31879 * 18 17 16 36 36 H 1.08997 * 109.75359 * 170.34993 * 21 19 18 37 37 H 1.08999 * 109.74971 * 291.08917 * 21 19 18 38 38 H 1.08997 * 113.64063 * 334.40330 * 23 22 16 39 39 H 1.09003 * 113.63322 * 105.37858 * 23 22 16 40 40 H 1.09000 * 113.59692 * 270.46938 * 24 23 22 41 41 H 1.08999 * 113.59919 * 139.61338 * 24 23 22 42 42 H 1.09000 * 113.64095 * 254.56032 * 25 22 16 43 43 H 1.09001 * 113.64371 * 25.45100 * 25 22 16 44 44 H 1.08003 * 119.91224 * 180.25456 * 26 12 11 45 45 H 1.07998 * 120.08768 * 179.70187 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3849 2.1073 -1.3947 5 1 1.4967 2.6200 0.8028 6 1 3.5890 1.4121 0.5922 7 6 2.0083 -1.2115 -0.0005 8 1 3.0491 -1.2339 -0.2877 9 6 1.3537 -2.4046 0.3743 10 6 1.8101 -3.6453 -0.1123 11 6 1.1723 -4.7937 0.2538 12 6 0.0671 -4.7414 1.1032 13 7 -0.5824 -5.9179 1.4680 14 6 0.1229 -7.0551 1.6285 15 8 1.3360 -7.0344 1.5501 16 7 -0.5166 -8.2155 1.8758 17 6 -1.9845 -8.2867 1.8233 18 6 -2.3914 -9.3956 0.8454 19 6 -1.6482 -10.6622 1.2076 20 8 -2.2439 -11.6915 1.4173 21 6 -0.1372 -10.6060 1.3010 22 6 0.2383 -9.4289 2.1958 23 6 0.2428 -9.7759 3.6886 24 6 1.7199 -10.1673 3.5085 25 6 1.7497 -9.2038 2.3091 26 6 -0.3871 -3.5172 1.5936 27 6 0.2405 -2.3604 1.2364 28 1 -0.4850 0.8399 0.0004 29 1 2.6630 -3.6869 -0.7736 30 1 1.5213 -5.7457 -0.1181 31 1 -1.5424 -5.9189 1.6066 32 1 -2.3749 -8.5133 2.8154 33 1 -2.3846 -7.3318 1.4827 34 1 -3.4652 -9.5692 0.9162 35 1 -2.1335 -9.0988 -0.1712 36 1 0.2401 -11.5335 1.7318 37 1 0.2881 -10.4606 0.3080 38 1 0.0952 -8.9133 4.3383 39 1 -0.4039 -10.6155 3.9440 40 1 1.8641 -11.2119 3.2328 41 1 2.3580 -9.8549 4.3351 42 1 2.3134 -9.5840 1.4571 43 1 2.0209 -8.1819 2.5742 44 1 -1.2410 -3.4850 2.2542 45 1 -0.1153 -1.4128 1.6130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929429447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:08:30 Heat of formation + Delta-G solvation = 5.651004 kcal Electronic energy + Delta-G solvation = -28064.620115 eV Core-core repulsion = 24241.604868 eV Total energy + Delta-G solvation = -3823.015247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43881 -39.51901 -38.54058 -37.14266 -35.66012 -34.41046 -32.90627 -31.29050 -30.02198 -29.57425 -28.77819 -25.81606 -25.23299 -24.34201 -23.73374 -21.66540 -21.02184 -20.25599 -19.84274 -18.75103 -17.47307 -17.27520 -16.81484 -16.06147 -15.79666 -15.65272 -15.34751 -15.25852 -14.96331 -14.58851 -14.02803 -13.93423 -13.78427 -13.27239 -13.01048 -12.78545 -12.69299 -12.44879 -12.14784 -12.05868 -12.00097 -11.78848 -11.65553 -11.45790 -11.28062 -11.12545 -10.90907 -10.78394 -10.55203 -10.53924 -9.99271 -9.75383 -9.69560 -9.38801 -9.04616 -8.68325 -8.61124 -7.55212 -6.98073 -6.77702 -4.29432 1.60847 2.55995 2.74372 3.05779 3.06747 3.10547 3.14490 3.55277 3.72436 3.92706 4.06050 4.31403 4.35415 4.46389 4.62013 4.63363 4.66730 4.81368 4.93810 5.07500 5.16476 5.27613 5.40538 5.49554 5.57186 5.62290 5.69197 5.81770 5.83667 5.98861 6.15355 6.21274 6.25887 6.37039 6.68695 6.79199 6.88883 7.03467 7.07541 7.14900 7.24483 7.30703 7.60035 7.82477 7.92816 8.03787 8.27376 8.37854 8.59271 8.87884 8.88735 9.05165 10.16701 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.002664 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.850277 B =10509.191777 C =11049.894215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.107 3.893 10 C -0.214 4.214 11 C -0.075 4.075 12 C 0.010 3.990 13 N -0.665 5.665 14 C 0.702 3.298 15 O -0.562 6.562 16 N -0.625 5.625 17 C 0.118 3.882 18 C -0.185 4.185 19 C 0.367 3.633 20 O -0.457 6.457 21 C -0.158 4.158 22 C 0.168 3.832 23 C -0.144 4.144 24 C -0.151 4.151 25 C -0.135 4.135 26 C -0.114 4.114 27 C -0.152 4.152 28 H 0.280 0.720 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.389 0.611 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.146 0.854 44 H 0.088 0.912 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.590 -15.180 4.257 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.235 4.235 11 C -0.095 4.095 12 C -0.083 4.083 13 N -0.312 5.312 14 C 0.406 3.594 15 O -0.440 6.440 16 N -0.362 5.362 17 C -0.006 4.006 18 C -0.224 4.224 19 C 0.242 3.758 20 O -0.330 6.330 21 C -0.197 4.197 22 C 0.081 3.919 23 C -0.182 4.182 24 C -0.189 4.189 25 C -0.172 4.172 26 C -0.134 4.134 27 C -0.172 4.172 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.225 0.775 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.163 0.837 44 H 0.107 0.893 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.237 -15.530 4.277 16.657 hybrid contribution -0.410 0.778 -0.086 0.884 sum -4.647 -14.752 4.192 16.025 Atomic orbital electron populations 1.69839 1.07546 1.29177 1.35444 1.25899 0.94721 1.01276 0.92236 0.86337 0.80845 0.80762 0.79024 1.19613 1.20070 1.18408 1.19540 0.98198 0.91291 1.39890 0.90397 1.17646 0.91048 0.92123 0.88799 1.20664 1.03987 0.92599 1.06214 1.20251 0.95458 0.97532 0.96254 1.16944 1.01357 0.83125 1.06863 1.42408 1.09749 1.07408 1.71626 1.15898 0.85352 0.79935 0.78232 1.90730 1.11427 1.84484 1.57317 1.47141 1.05392 1.08323 1.75333 1.21539 0.81097 0.98849 0.99111 1.22689 1.02096 0.95274 1.02364 1.24733 0.91721 0.88639 0.70657 1.90412 1.71917 1.33761 1.36951 1.22407 0.94750 0.99803 1.02729 1.21246 0.94306 0.82833 0.93471 1.23326 0.97693 1.01603 0.95620 1.22948 0.96065 0.99685 1.00203 1.24040 0.91625 1.03806 0.97710 1.20184 1.00468 0.92055 1.00711 1.20835 0.99311 0.96323 1.00752 0.90927 0.88764 0.87937 0.77537 0.90814 0.88985 0.88141 0.87694 0.87964 0.87477 0.89395 0.91485 0.90597 0.90961 0.91441 0.83725 0.89341 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.98 11.04 55.55 0.61 -19.37 16 2 C 0.08 1.88 5.12 -17.34 -0.09 1.79 16 3 Si 0.91 18.34 29.59 -169.99 -5.03 13.31 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.46 -12.02 9.03 -37.86 -0.34 -12.36 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.11 2.79 5.56 -106.80 -0.59 2.20 16 10 C -0.21 -5.31 9.74 -39.26 -0.38 -5.69 16 11 C -0.07 -1.73 8.57 -39.79 -0.34 -2.07 16 12 C 0.01 0.20 6.28 -83.57 -0.52 -0.32 16 13 N -0.66 -11.03 5.16 -14.10 -0.07 -11.11 16 14 C 0.70 11.40 7.93 -86.91 -0.69 10.71 16 15 O -0.56 -10.90 10.12 5.29 0.05 -10.85 16 16 N -0.62 -7.51 2.80 -163.84 -0.46 -7.97 16 17 C 0.12 1.04 6.35 -3.56 -0.02 1.02 16 18 C -0.19 -1.52 6.29 -27.43 -0.17 -1.69 16 19 C 0.37 3.73 6.69 -28.37 -0.19 3.54 16 20 O -0.46 -5.94 17.89 6.00 0.11 -5.83 16 21 C -0.16 -1.51 5.33 -27.72 -0.15 -1.66 16 22 C 0.17 1.86 1.13 -131.82 -0.15 1.71 16 23 C -0.14 -1.46 7.41 -26.14 -0.19 -1.65 16 24 C -0.15 -1.49 7.73 -25.82 -0.20 -1.69 16 25 C -0.13 -1.68 5.93 -26.15 -0.16 -1.84 16 26 C -0.11 -2.51 9.89 -39.79 -0.39 -2.91 16 27 C -0.15 -3.81 8.63 -39.26 -0.34 -4.15 16 28 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 29 H 0.09 2.23 8.06 -52.48 -0.42 1.80 16 30 H 0.10 2.32 6.44 -52.49 -0.34 1.98 16 31 H 0.39 5.15 6.43 -40.82 -0.26 4.88 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.72 5.75 -51.93 -0.30 0.42 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.89 7.40 -51.93 -0.38 0.51 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.08 0.64 7.72 -51.93 -0.40 0.24 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 43 H 0.15 2.32 5.10 -54.46 -0.28 2.04 16 44 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 45 H 0.12 3.05 6.26 -52.49 -0.33 2.72 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -29.72 358.00 -10.38 -40.10 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.06 Total: 11.38 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -4.92 Total: -15.07 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.08 Total: -38.44 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.16 Total: -16.68 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.72 -10.38 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929429447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.753 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds