Wall clock time and date at job start Sat Apr 11 2020 02:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86798 * 119.99718 * 2 1 4 4 H 1.48495 * 109.47290 * 274.98290 * 3 2 1 5 5 H 1.48506 * 109.47090 * 34.98441 * 3 2 1 6 6 H 1.48508 * 109.46912 * 154.98100 * 3 2 1 7 7 C 1.39896 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00151 * 162.12152 * 7 2 1 9 9 C 1.41154 * 119.99890 * 342.11766 * 7 2 1 10 10 C 1.40868 * 120.16386 * 154.11488 * 9 7 2 11 11 C 1.36371 * 119.82985 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16768 * 0.27488 * 11 10 9 13 13 N 1.39244 * 119.83190 * 179.72512 * 12 11 10 14 14 C 1.34779 * 119.99936 * 34.05604 * 13 12 11 15 15 O 1.21581 * 120.00287 * 5.32105 * 14 13 12 16 16 N 1.34778 * 120.00079 * 185.32731 * 14 13 12 17 17 C 1.47054 * 120.58321 * 6.93052 * 16 14 13 18 18 C 1.53343 * 108.82552 * 124.99151 * 17 16 14 19 19 C 1.51255 * 108.81294 * 51.11397 * 18 17 16 20 20 O 1.20754 * 120.86509 * 125.43293 * 19 18 17 21 21 C 1.51500 * 118.27715 * 305.45921 * 19 18 17 22 22 C 1.46445 * 120.58930 * 186.66183 * 16 14 13 23 23 C 1.53267 * 113.69914 * 102.28670 * 22 16 14 24 24 C 1.53872 * 86.92565 * 219.89033 * 23 22 16 25 25 C 1.53233 * 113.75862 * 4.03450 * 22 16 14 26 26 C 1.39479 * 120.33020 * 359.44955 * 12 11 10 27 27 C 1.36374 * 120.17178 * 0.54936 * 26 12 11 28 28 H 0.96993 * 120.00521 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.08569 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.91371 * 180.02562 * 11 10 9 31 31 H 0.96996 * 120.00078 * 214.05646 * 13 12 11 32 32 H 1.08995 * 109.58163 * 244.79553 * 17 16 14 33 33 H 1.09002 * 109.58047 * 5.06082 * 17 16 14 34 34 H 1.09004 * 109.58165 * 170.91332 * 18 17 16 35 35 H 1.09003 * 109.58152 * 291.31879 * 18 17 16 36 36 H 1.08997 * 109.75359 * 170.34993 * 21 19 18 37 37 H 1.08999 * 109.74971 * 291.08917 * 21 19 18 38 38 H 1.08997 * 113.64063 * 334.40330 * 23 22 16 39 39 H 1.09003 * 113.63322 * 105.37858 * 23 22 16 40 40 H 1.09000 * 113.59692 * 270.46938 * 24 23 22 41 41 H 1.08999 * 113.59919 * 139.61338 * 24 23 22 42 42 H 1.09000 * 113.64095 * 254.56032 * 25 22 16 43 43 H 1.09001 * 113.64371 * 25.45100 * 25 22 16 44 44 H 1.08003 * 119.91224 * 180.25456 * 26 12 11 45 45 H 1.07998 * 120.08768 * 179.70187 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3849 2.1073 -1.3947 5 1 1.4967 2.6200 0.8028 6 1 3.5890 1.4121 0.5922 7 6 2.0083 -1.2115 -0.0005 8 1 3.0491 -1.2339 -0.2877 9 6 1.3537 -2.4046 0.3743 10 6 1.8101 -3.6453 -0.1123 11 6 1.1723 -4.7937 0.2538 12 6 0.0671 -4.7414 1.1032 13 7 -0.5824 -5.9179 1.4680 14 6 0.1229 -7.0551 1.6285 15 8 1.3360 -7.0344 1.5501 16 7 -0.5166 -8.2155 1.8758 17 6 -1.9845 -8.2867 1.8233 18 6 -2.3914 -9.3956 0.8454 19 6 -1.6482 -10.6622 1.2076 20 8 -2.2439 -11.6915 1.4173 21 6 -0.1372 -10.6060 1.3010 22 6 0.2383 -9.4289 2.1958 23 6 0.2428 -9.7759 3.6886 24 6 1.7199 -10.1673 3.5085 25 6 1.7497 -9.2038 2.3091 26 6 -0.3871 -3.5172 1.5936 27 6 0.2405 -2.3604 1.2364 28 1 -0.4850 0.8399 0.0004 29 1 2.6630 -3.6869 -0.7736 30 1 1.5213 -5.7457 -0.1181 31 1 -1.5424 -5.9189 1.6066 32 1 -2.3749 -8.5133 2.8154 33 1 -2.3846 -7.3318 1.4827 34 1 -3.4652 -9.5692 0.9162 35 1 -2.1335 -9.0988 -0.1712 36 1 0.2401 -11.5335 1.7318 37 1 0.2881 -10.4606 0.3080 38 1 0.0952 -8.9133 4.3383 39 1 -0.4039 -10.6155 3.9440 40 1 1.8641 -11.2119 3.2328 41 1 2.3580 -9.8549 4.3351 42 1 2.3134 -9.5840 1.4571 43 1 2.0209 -8.1819 2.5742 44 1 -1.2410 -3.4850 2.2542 45 1 -0.1153 -1.4128 1.6130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929429447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:08:29 Heat of formation + Delta-G solvation = -10.004686 kcal Electronic energy + Delta-G solvation = -28065.298996 eV Core-core repulsion = 24241.604868 eV Total energy + Delta-G solvation = -3823.694129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46001 -40.68891 -39.70062 -38.67865 -36.68522 -36.02982 -34.54358 -32.29874 -31.41829 -30.81677 -30.51236 -26.90679 -26.72221 -25.14719 -24.87774 -23.27029 -22.65596 -21.42596 -20.93816 -19.94418 -19.20137 -18.41449 -18.07160 -17.33446 -16.96384 -16.66330 -16.60391 -16.23170 -16.01150 -15.76299 -15.62398 -15.08139 -14.94649 -14.62224 -14.40775 -14.01585 -14.00402 -13.71766 -13.54425 -13.32103 -13.24587 -12.97397 -12.80119 -12.75492 -12.59410 -12.41157 -12.29610 -12.15557 -11.76810 -11.60990 -11.51658 -11.44640 -11.14982 -10.63493 -10.53844 -10.08527 -9.71091 -9.41361 -8.76590 -8.59003 -6.21774 0.80047 0.89768 1.18989 1.40967 1.46666 1.55034 1.60558 2.17946 2.24602 2.79061 2.93404 2.97313 3.45003 3.54403 3.65488 3.78085 3.80332 3.90096 4.06008 4.14384 4.32840 4.38917 4.42869 4.54107 4.55733 4.70862 4.76727 4.81170 4.91340 4.92585 4.97187 5.02053 5.07030 5.15665 5.19216 5.29862 5.33269 5.38109 5.49062 5.65975 5.78112 5.87216 6.08900 6.12685 6.19008 6.36630 6.42818 6.70029 6.97470 7.04273 7.05004 7.68965 8.36522 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.002664 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.850277 B =10509.191777 C =11049.894215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.039 3.961 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.500 4.500 8 H 0.071 0.929 9 C 0.075 3.925 10 C -0.231 4.231 11 C -0.084 4.084 12 C 0.033 3.967 13 N -0.660 5.660 14 C 0.700 3.300 15 O -0.596 6.596 16 N -0.615 5.615 17 C 0.112 3.888 18 C -0.179 4.179 19 C 0.373 3.627 20 O -0.485 6.485 21 C -0.155 4.155 22 C 0.166 3.834 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.113 4.113 27 C -0.170 4.170 28 H 0.289 0.711 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.409 0.591 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 -16.394 5.013 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.176 4.176 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.530 4.530 8 H 0.089 0.911 9 C 0.073 3.927 10 C -0.252 4.252 11 C -0.104 4.104 12 C -0.061 4.061 13 N -0.309 5.309 14 C 0.404 3.596 15 O -0.476 6.476 16 N -0.351 5.351 17 C -0.010 4.010 18 C -0.218 4.218 19 C 0.250 3.750 20 O -0.360 6.360 21 C -0.193 4.193 22 C 0.080 3.920 23 C -0.175 4.175 24 C -0.178 4.178 25 C -0.181 4.181 26 C -0.133 4.133 27 C -0.190 4.190 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.248 0.752 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.128 0.872 44 H 0.139 0.861 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.880 -16.798 5.045 18.498 hybrid contribution 0.051 0.942 -0.289 0.986 sum -5.829 -15.856 4.757 17.550 Atomic orbital electron populations 1.69867 1.08726 1.30520 1.35774 1.26661 0.95522 1.04162 0.91292 0.85256 0.79193 0.76326 0.79317 1.18843 1.18803 1.18668 1.19732 0.98262 0.92679 1.42287 0.91124 1.17944 0.92186 0.92708 0.89908 1.20787 1.04486 0.93091 1.06787 1.20347 0.96242 0.96927 0.96882 1.16938 1.00008 0.84644 1.04507 1.42200 1.10679 1.06241 1.71810 1.16040 0.84953 0.80688 0.77953 1.90763 1.13187 1.85208 1.58479 1.47132 1.06943 1.07110 1.73933 1.21834 0.78735 0.99912 1.00564 1.22679 1.03002 0.93738 1.02351 1.24948 0.91791 0.88789 0.69471 1.90418 1.72339 1.34905 1.38381 1.22405 0.94776 0.99425 1.02731 1.21407 0.93195 0.82792 0.94587 1.23258 0.98027 1.01733 0.94469 1.22932 0.95963 1.00093 0.98821 1.23845 0.92961 1.02511 0.98819 1.20432 1.01006 0.91327 1.00577 1.20829 0.99793 0.96970 1.01383 0.90084 0.89038 0.87760 0.75242 0.88931 0.87688 0.86236 0.87058 0.86790 0.87030 0.90247 0.90002 0.88546 0.90951 0.91866 0.87232 0.86069 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.08 11.04 21.82 0.24 -41.84 16 2 C 0.04 1.93 5.12 85.24 0.44 2.37 16 3 Si 0.98 38.09 29.59 68.60 2.03 40.12 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.50 -27.26 9.03 23.39 0.21 -27.05 16 8 H 0.07 3.78 7.91 -2.91 -0.02 3.75 16 9 C 0.08 4.09 5.56 -21.28 -0.12 3.97 16 10 C -0.23 -11.91 9.74 22.48 0.22 -11.69 16 11 C -0.08 -3.92 8.57 22.13 0.19 -3.73 16 12 C 0.03 1.38 6.28 38.56 0.24 1.62 16 13 N -0.66 -20.67 5.16 -316.78 -1.63 -22.31 16 14 C 0.70 21.85 7.93 179.05 1.42 23.27 16 15 O -0.60 -23.25 10.12 -3.97 -0.04 -23.29 16 16 N -0.62 -13.44 2.80 -790.54 -2.22 -15.66 16 17 C 0.11 1.59 6.35 86.39 0.55 2.14 16 18 C -0.18 -2.32 6.29 30.14 0.19 -2.13 16 19 C 0.37 6.50 6.69 29.53 0.20 6.70 16 20 O -0.49 -11.36 17.89 -1.43 -0.03 -11.38 16 21 C -0.15 -2.57 5.33 29.95 0.16 -2.41 16 22 C 0.17 3.34 1.13 3.63 0.00 3.35 16 23 C -0.14 -2.44 7.41 30.98 0.23 -2.21 16 24 C -0.14 -2.52 7.73 31.18 0.24 -2.28 16 25 C -0.14 -3.51 5.93 30.97 0.18 -3.33 16 26 C -0.11 -4.91 9.89 22.13 0.22 -4.70 16 27 C -0.17 -8.68 8.63 22.48 0.19 -8.48 16 28 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 29 H 0.09 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.10 4.81 6.44 -2.91 -0.02 4.79 16 31 H 0.41 9.56 6.43 -92.71 -0.60 8.96 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.24 5.75 -2.39 -0.01 1.23 16 34 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.11 1.66 7.40 -2.39 -0.02 1.64 16 37 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 40 H 0.10 1.36 7.72 -2.39 -0.02 1.34 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.54 8.09 -2.39 -0.02 1.52 16 43 H 0.11 3.59 5.10 -42.55 -0.22 3.38 16 44 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 45 H 0.11 5.61 6.26 -2.91 -0.02 5.59 16 Total: -1.00 -66.92 358.00 3.35 -63.57 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.23 Total: 35.39 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.77 Total: -24.60 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -3.61 Total: -79.81 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.07 Total: -34.67 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -66.92 3.35 -63.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929429447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.569 kcal (2) G-P(sol) polarization free energy of solvation -66.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds