Wall clock time and date at job start Sat Apr 11 2020 02:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00644 * 2 1 4 4 H 1.48493 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46710 * 300.00170 * 3 2 1 6 6 H 1.48507 * 109.46644 * 59.99685 * 3 2 1 7 7 C 1.37880 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99820 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47605 * 300.00126 * 9 7 2 11 11 O 1.42899 * 109.47155 * 60.00598 * 9 7 2 12 12 C 1.53007 * 109.46771 * 179.97438 * 9 7 2 13 13 N 1.46899 * 109.46678 * 180.02562 * 12 9 7 14 14 C 1.46902 * 110.99880 * 180.02562 * 13 12 9 15 15 H 1.09001 * 109.46976 * 324.99641 * 14 13 12 16 16 C 1.53005 * 109.47183 * 204.99933 * 14 13 12 17 17 N 1.46500 * 109.47045 * 54.99529 * 16 14 13 18 18 C 1.35761 * 119.62485 * 90.00019 * 17 16 14 19 19 C 1.35346 * 120.70252 * 180.02562 * 18 17 16 20 20 C 1.40196 * 119.94872 * 359.97438 * 19 18 17 21 21 C 1.36400 * 119.26458 * 359.97438 * 20 19 18 22 22 C 1.34659 * 119.62333 * 270.26337 * 17 16 14 23 23 O 1.22061 * 119.98796 * 359.97438 * 22 17 16 24 24 C 1.50694 * 109.47776 * 84.99637 * 14 13 12 25 25 C 1.38240 * 120.00080 * 39.72530 * 24 14 13 26 26 C 1.38228 * 120.00425 * 179.81244 * 25 24 14 27 27 C 1.38240 * 119.99793 * 0.40086 * 26 25 24 28 28 C 1.38235 * 119.99704 * 359.85572 * 27 26 25 29 29 C 1.38230 * 120.00549 * 359.95555 * 28 27 26 30 30 H 0.97003 * 119.99387 * 0.02562 * 1 2 3 31 31 H 0.96703 * 114.00327 * 59.98918 * 11 9 7 32 32 H 1.08999 * 109.46776 * 60.00675 * 12 9 7 33 33 H 1.08996 * 109.47177 * 300.00411 * 12 9 7 34 34 H 1.00900 * 111.00533 * 56.04809 * 13 12 9 35 35 H 1.08999 * 109.46621 * 294.99526 * 16 14 13 36 36 H 1.08998 * 109.46892 * 174.99268 * 16 14 13 37 37 H 1.08001 * 119.64874 * 0.02562 * 18 17 16 38 38 H 1.08000 * 120.02652 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.36756 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.34439 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.99307 * 0.02562 * 25 24 14 42 42 H 1.08000 * 119.99997 * 180.23268 * 26 25 24 43 43 H 1.08000 * 119.99590 * 179.83245 * 27 26 25 44 44 H 1.08000 * 119.99557 * 179.97438 * 28 27 26 45 45 H 1.07998 * 120.00393 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 1 0.6244 -2.5571 0.8896 11 8 0.4289 -2.5746 -1.1671 12 6 2.2450 -3.6622 -0.0018 13 7 1.5104 -4.9343 -0.0024 14 6 2.4348 -6.0760 -0.0031 15 1 3.3176 -5.8284 -0.5925 16 6 1.7396 -7.2948 -0.6133 17 7 1.2331 -6.9523 -1.9446 18 6 2.0239 -7.1398 -3.0321 19 6 1.5784 -6.8304 -4.2721 20 6 0.2874 -6.3110 -4.4426 21 6 -0.5060 -6.1244 -3.3490 22 6 -0.0095 -6.4503 -2.0753 23 8 -0.7070 -6.2834 -1.0876 24 6 2.8473 -6.3893 1.4120 25 6 1.9188 -6.3213 2.4339 26 6 2.2962 -6.6124 3.7314 27 6 3.6042 -6.9635 4.0084 28 6 4.5340 -7.0264 2.9874 29 6 4.1557 -6.7390 1.6893 30 1 -0.4849 0.8401 -0.0004 31 1 0.9207 -2.5290 -1.9984 32 1 2.8723 -3.6049 0.8878 33 1 2.8710 -3.6040 -0.8922 34 1 0.8736 -4.9838 -0.7836 35 1 0.9090 -7.5966 0.0249 36 1 2.4517 -8.1159 -0.6956 37 1 3.0192 -7.5400 -2.9064 38 1 2.2169 -6.9835 -5.1296 39 1 -0.0751 -6.0622 -5.4291 40 1 -1.5033 -5.7250 -3.4601 41 1 0.8975 -6.0440 2.2178 42 1 1.5698 -6.5629 4.5291 43 1 3.8997 -7.1883 5.0226 44 1 5.5560 -7.3003 3.2039 45 1 4.8820 -6.7886 0.8915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930342179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:08:41 Heat of formation + Delta-G solvation = -13.313517 kcal Electronic energy + Delta-G solvation = -28448.098372 eV Core-core repulsion = 24624.260762 eV Total energy + Delta-G solvation = -3823.837610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -41.47951 -39.22674 -36.84262 -36.72576 -35.42315 -33.64009 -32.06701 -31.21301 -30.68128 -29.86844 -28.73513 -27.30341 -24.64743 -23.98314 -23.18913 -22.44668 -22.18526 -20.46034 -20.22386 -17.53623 -17.25336 -17.00480 -16.68092 -16.33489 -16.17258 -15.27120 -15.06664 -14.61952 -14.54958 -14.32920 -14.17538 -14.08515 -13.72794 -13.28114 -13.14123 -13.09358 -12.62473 -12.57005 -12.28045 -12.11642 -12.07821 -11.75052 -11.57581 -11.10514 -11.04232 -10.89854 -10.79823 -10.72883 -10.62035 -10.11557 -10.03680 -9.74870 -8.95964 -8.74280 -8.58758 -8.52554 -8.11287 -7.90022 -7.78169 -5.94849 -4.13416 0.84611 1.47369 1.60112 1.92788 2.63825 3.29110 3.36941 3.40267 3.71354 3.94822 4.33668 4.45018 4.47456 4.73150 4.86874 4.95426 5.01601 5.07747 5.14857 5.22366 5.24411 5.27507 5.31570 5.34418 5.44018 5.68197 5.72880 5.86085 5.96982 6.07172 6.13010 6.18444 6.25968 6.29106 6.29742 6.47837 6.53000 6.58950 6.72082 6.85125 6.93726 7.10613 7.18218 7.55906 7.81449 7.91176 8.05391 8.18854 8.29445 8.90154 9.43948 9.63651 11.09304 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007781 B = 0.005181 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.613440 B = 5402.992453 C = 8010.289884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.571 4.571 8 H 0.054 0.946 9 C 0.234 3.766 10 H 0.063 0.937 11 O -0.559 6.559 12 C 0.039 3.961 13 N -0.673 5.673 14 C 0.112 3.888 15 H 0.048 0.952 16 C 0.092 3.908 17 N -0.501 5.501 18 C 0.128 3.872 19 C -0.234 4.234 20 C -0.026 4.026 21 C -0.231 4.231 22 C 0.507 3.493 23 O -0.519 6.519 24 C -0.072 4.072 25 C -0.075 4.075 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.129 4.129 29 C -0.117 4.117 30 H 0.259 0.741 31 H 0.336 0.664 32 H 0.064 0.936 33 H 0.012 0.988 34 H 0.353 0.647 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.157 0.843 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 -19.314 -4.633 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.610 4.610 8 H 0.072 0.928 9 C 0.176 3.824 10 H 0.081 0.919 11 O -0.361 6.361 12 C -0.090 4.090 13 N -0.311 5.311 14 C 0.000 4.000 15 H 0.066 0.934 16 C -0.030 4.030 17 N -0.214 5.214 18 C 0.001 3.999 19 C -0.257 4.257 20 C -0.047 4.047 21 C -0.252 4.252 22 C 0.308 3.692 23 O -0.398 6.398 24 C -0.074 4.074 25 C -0.093 4.093 26 C -0.144 4.144 27 C -0.141 4.141 28 C -0.147 4.147 29 C -0.136 4.136 30 H 0.069 0.931 31 H 0.178 0.822 32 H 0.082 0.918 33 H 0.030 0.970 34 H 0.178 0.822 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.174 0.826 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.479 -19.159 -2.824 20.421 hybrid contribution 1.598 1.214 -1.325 2.405 sum 8.077 -17.944 -4.149 20.111 Atomic orbital electron populations 1.70110 1.05872 1.26191 1.46960 1.25033 0.94669 0.99027 0.93924 0.86638 0.80164 0.84005 0.77682 1.19811 1.20907 1.20848 1.21647 0.93044 0.91556 1.54744 0.92807 1.19392 0.88056 0.88689 0.86240 0.91913 1.86648 1.38187 1.96221 1.15016 1.22882 0.97299 0.90064 0.98784 1.60536 1.18129 1.00456 1.51977 1.20715 0.95003 0.91773 0.92485 0.93407 1.22251 1.00880 0.97560 0.82302 1.45674 1.14814 1.52819 1.08054 1.21903 0.95857 0.95530 0.86633 1.20598 0.98409 1.10378 0.96332 1.21400 0.92733 0.91263 0.99303 1.22218 1.03128 1.08648 0.91244 1.17234 0.80566 0.79715 0.91640 1.91066 1.55567 1.53552 1.39661 1.19697 0.93351 0.99453 0.94875 1.21188 1.00835 0.95673 0.91652 1.21218 0.96221 1.00063 0.96942 1.21112 0.93703 1.00503 0.98816 1.20989 0.99166 1.01585 0.92949 1.20977 0.95391 1.00477 0.96748 0.93081 0.82150 0.91786 0.97012 0.82159 0.87255 0.88818 0.82596 0.84088 0.84993 0.83308 0.84672 0.86249 0.86597 0.86543 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.21 12.84 55.43 0.71 -25.50 16 2 C 0.08 2.30 5.40 -17.82 -0.10 2.21 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.57 -16.28 8.76 -34.44 -0.30 -16.58 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.23 6.28 3.10 -27.88 -0.09 6.20 16 10 H 0.06 1.92 8.14 -51.93 -0.42 1.49 16 11 O -0.56 -15.19 12.06 -35.23 -0.43 -15.61 16 12 C 0.04 0.85 5.12 -3.82 -0.02 0.83 16 13 N -0.67 -13.06 5.40 -107.95 -0.58 -13.64 16 14 C 0.11 1.64 2.55 -68.86 -0.18 1.47 16 15 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 16 C 0.09 1.13 5.11 -4.04 -0.02 1.11 16 17 N -0.50 -6.39 2.38 -119.77 -0.29 -6.67 16 18 C 0.13 1.19 10.28 -16.84 -0.17 1.02 16 19 C -0.23 -2.06 10.01 -39.88 -0.40 -2.46 16 20 C -0.03 -0.26 10.10 -39.51 -0.40 -0.66 16 21 C -0.23 -3.18 9.99 -39.38 -0.39 -3.57 16 22 C 0.51 8.21 5.76 -15.45 -0.09 8.12 16 23 O -0.52 -10.60 15.19 4.86 0.07 -10.53 16 24 C -0.07 -1.04 4.71 -104.62 -0.49 -1.53 16 25 C -0.08 -1.15 9.33 -39.58 -0.37 -1.52 16 26 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 27 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 28 C -0.13 -1.50 10.05 -39.59 -0.40 -1.89 16 29 C -0.12 -1.46 9.67 -39.58 -0.38 -1.84 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.34 8.18 9.04 45.56 0.41 8.59 16 32 H 0.06 1.44 8.00 -51.93 -0.42 1.02 16 33 H 0.01 0.25 8.06 -51.93 -0.42 -0.17 16 34 H 0.35 7.26 3.83 -39.29 -0.15 7.11 16 35 H 0.11 1.54 7.39 -51.93 -0.38 1.16 16 36 H 0.09 0.80 8.01 -51.93 -0.42 0.38 16 37 H 0.16 0.88 8.04 -52.49 -0.42 0.46 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.15 2.02 8.06 -52.49 -0.42 1.59 16 41 H 0.14 2.33 7.71 -52.48 -0.40 1.92 16 42 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.19 8.04 -52.49 -0.42 0.77 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -35.60 377.08 -9.96 -45.55 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -5.52 Total: 17.11 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -4.59 Total: -13.08 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.16 Total: -45.81 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.35 Total: -26.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.60 -9.96 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930342179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.241 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds