Wall clock time and date at job start Sat Apr 11 2020 02:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00227 * 2 1 4 4 H 1.48508 * 109.46932 * 264.85942 * 3 2 1 5 5 H 1.48501 * 109.47274 * 24.85466 * 3 2 1 6 6 H 1.48494 * 109.47270 * 144.86094 * 3 2 1 7 7 C 1.37878 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00409 * 357.35657 * 7 2 1 9 9 C 1.50704 * 119.99734 * 177.35915 * 7 2 1 10 10 C 1.53004 * 115.55099 * 87.62016 * 9 7 2 11 11 N 1.46495 * 109.46888 * 39.51347 * 10 9 7 12 12 C 1.34779 * 119.99711 * 184.39828 * 11 10 9 13 13 O 1.21282 * 120.00115 * 4.68526 * 12 11 10 14 14 C 1.50700 * 120.00250 * 184.69023 * 12 11 10 15 15 C 1.52997 * 109.47453 * 186.34118 * 14 12 11 16 16 H 1.08991 * 109.46407 * 304.97770 * 15 14 12 17 17 C 1.52907 * 109.45032 * 64.94746 * 15 14 12 18 18 C 1.50504 * 109.90659 * 71.44613 * 17 15 14 19 19 O 1.21288 * 119.61291 * 215.17467 * 18 17 15 20 20 N 1.34555 * 120.77085 * 35.15477 * 18 17 15 21 21 C 1.39828 * 120.45589 * 359.22685 * 20 18 17 22 22 C 1.38866 * 120.19434 * 161.49714 * 21 20 18 23 23 C 1.38107 * 119.88631 * 179.66516 * 22 21 20 24 24 C 1.38310 * 120.09184 * 0.59761 * 23 22 21 25 25 C 1.38277 * 120.14650 * 359.42995 * 24 23 22 26 26 C 1.38086 * 120.02666 * 0.26167 * 25 24 23 27 27 C 1.53007 * 117.51495 * 233.31694 * 9 7 2 28 28 C 1.52995 * 117.50014 * 301.94568 * 9 7 2 29 29 H 0.96999 * 119.99541 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.46835 * 279.51637 * 10 9 7 31 31 H 1.08993 * 109.46962 * 159.51286 * 10 9 7 32 32 H 0.96999 * 120.00365 * 4.39892 * 11 10 9 33 33 H 1.09005 * 109.47227 * 66.33941 * 14 12 11 34 34 H 1.09005 * 109.46822 * 306.34454 * 14 12 11 35 35 H 1.09004 * 109.39692 * 191.57445 * 17 15 14 36 36 H 1.08998 * 109.40347 * 311.30969 * 17 15 14 37 37 H 0.97001 * 119.77645 * 179.18918 * 20 18 17 38 38 H 1.07995 * 120.05757 * 0.02562 * 22 21 20 39 39 H 1.08002 * 119.95364 * 180.31422 * 23 22 21 40 40 H 1.07996 * 119.92217 * 179.70296 * 24 23 22 41 41 H 1.08001 * 119.98815 * 180.23996 * 25 24 23 42 42 H 1.09005 * 117.49470 * 214.96934 * 27 9 7 43 43 H 1.08993 * 117.49731 * 359.97438 * 27 9 7 44 44 H 1.09007 * 117.49756 * 359.97438 * 28 9 7 45 45 H 1.08992 * 117.50094 * 144.99838 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6054 1.9836 -1.3945 5 1 1.3966 2.6816 0.5885 6 1 3.4882 1.4739 0.8058 7 6 2.0045 -1.1941 -0.0005 8 1 1.4654 -2.1289 0.0422 9 6 3.5104 -1.1948 -0.0607 10 6 4.2248 -1.1066 1.2895 11 7 3.5123 -1.9256 2.2732 12 6 3.9106 -1.9307 3.5608 13 8 4.8035 -1.1938 3.9223 14 6 3.2465 -2.8520 4.5514 15 6 3.7686 -2.5508 5.9576 16 1 4.8565 -2.6183 5.9633 17 6 3.3437 -1.1402 6.3672 18 6 1.8629 -1.1083 6.6340 19 8 1.2236 -0.1181 6.3479 20 7 1.2398 -2.1656 7.1858 21 6 1.9567 -3.3222 7.5073 22 6 1.4303 -4.2439 8.4028 23 6 2.1408 -5.3875 8.7105 24 6 3.3800 -5.6092 8.1377 25 6 3.9070 -4.6929 7.2462 26 6 3.1985 -3.5507 6.9297 27 6 4.1736 -2.0301 -1.1577 28 6 4.1700 -0.5032 -1.2554 29 1 -0.4849 0.8401 0.0004 30 1 4.2420 -0.0695 1.6243 31 1 5.2464 -1.4716 1.1844 32 1 2.7541 -2.4642 1.9980 33 1 3.4729 -3.8866 4.2936 34 1 2.1677 -2.6984 4.5237 35 1 3.8805 -0.8482 7.2699 36 1 3.5821 -0.4427 5.5643 37 1 0.2869 -2.1250 7.3623 38 1 0.4645 -4.0695 8.8533 39 1 1.7302 -6.1075 9.4029 40 1 3.9354 -6.5021 8.3840 41 1 4.8732 -4.8705 6.7975 42 1 5.1190 -2.5168 -0.9175 43 1 3.5208 -2.5797 -1.8358 44 1 3.5148 -0.0481 -1.9982 45 1 5.1128 0.0146 -1.0797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935782402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:09:14 Heat of formation + Delta-G solvation = -30.080863 kcal Electronic energy + Delta-G solvation = -27973.159226 eV Core-core repulsion = 24148.594529 eV Total energy + Delta-G solvation = -3824.564697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.32472 -39.18141 -38.73495 -37.12828 -35.46394 -34.69748 -33.40604 -32.16367 -30.53444 -29.55688 -28.93432 -26.39957 -25.24118 -23.67554 -22.88155 -22.54359 -21.71163 -19.92370 -19.31102 -18.76773 -18.11821 -17.19693 -16.64408 -16.43172 -16.17299 -15.63863 -15.18153 -15.03879 -14.80609 -14.56426 -14.51025 -13.94809 -13.75193 -13.48457 -13.44946 -13.14436 -12.87501 -12.73912 -12.55389 -12.31640 -12.17850 -11.77317 -11.39195 -11.29058 -11.17571 -11.04830 -10.80356 -10.64094 -10.50495 -10.19201 -9.97558 -9.72530 -9.43797 -9.16827 -9.04309 -8.67794 -8.62736 -8.21539 -8.17291 -6.18787 -4.24583 0.98562 1.07493 2.51981 2.93461 3.10976 3.29445 3.40706 3.43913 3.51289 3.79816 4.33078 4.39393 4.46963 4.51033 4.73667 4.80075 4.84286 4.89667 5.08967 5.11886 5.17662 5.22598 5.40666 5.52315 5.58598 5.68295 5.69746 5.73492 5.85732 5.98019 5.99398 6.04123 6.06289 6.17440 6.25121 6.28592 6.42916 6.51909 6.55790 6.70137 6.70262 6.91508 7.05282 7.06515 7.19075 7.66328 7.95942 8.23059 8.37012 8.78976 8.80470 9.44965 10.92019 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.003449 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.614643 B = 8116.953803 C = 8812.756071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.085 3.915 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.496 4.496 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.150 3.850 11 N -0.694 5.694 12 C 0.506 3.494 13 O -0.561 6.561 14 C -0.137 4.137 15 C -0.025 4.025 16 H 0.107 0.893 17 C -0.138 4.138 18 C 0.519 3.481 19 O -0.517 6.517 20 N -0.668 5.668 21 C 0.169 3.831 22 C -0.156 4.156 23 C -0.090 4.090 24 C -0.145 4.145 25 C -0.078 4.078 26 C -0.117 4.117 27 C -0.178 4.178 28 C -0.196 4.196 29 H 0.267 0.733 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.410 0.590 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.409 0.591 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 -11.895 16.363 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.119 4.119 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.182 1.182 7 C -0.533 4.533 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.026 3.974 11 N -0.343 5.343 12 C 0.291 3.709 13 O -0.442 6.442 14 C -0.177 4.177 15 C -0.044 4.044 16 H 0.125 0.875 17 C -0.178 4.178 18 C 0.308 3.692 19 O -0.391 6.391 20 N -0.312 5.312 21 C 0.072 3.928 22 C -0.177 4.177 23 C -0.108 4.108 24 C -0.164 4.164 25 C -0.097 4.097 26 C -0.120 4.120 27 C -0.216 4.216 28 C -0.234 4.234 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.247 0.753 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.143 0.857 37 H 0.247 0.753 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.832 -10.611 16.340 20.646 hybrid contribution -0.584 0.636 -0.135 0.874 sum 6.248 -9.975 16.204 20.028 Atomic orbital electron populations 1.69874 1.06409 1.27453 1.49000 1.24944 0.94537 0.99161 0.93252 0.86905 0.80559 0.83239 0.78665 1.20191 1.22077 1.18206 1.20112 0.86079 0.94449 1.52680 0.90374 1.19616 0.95505 1.00596 0.85999 1.21096 0.92807 0.94866 0.88595 1.45927 1.34217 1.46818 1.07380 1.20406 0.83519 0.83673 0.83262 1.90625 1.32342 1.42312 1.78882 1.21742 1.01954 1.00788 0.93222 1.19755 1.01966 0.91184 0.91485 0.87521 1.21912 0.90558 0.99684 1.05646 1.20970 0.91203 0.81698 0.75345 1.90816 1.67458 1.31686 1.49173 1.43723 1.12311 1.13576 1.61638 1.17685 0.92234 0.87389 0.95464 1.20776 1.01632 0.95595 0.99686 1.20956 0.94543 0.96325 0.99025 1.21091 0.96389 1.00014 0.98911 1.20899 0.99529 0.92494 0.96740 1.19541 0.94657 0.97594 1.00168 1.22890 1.00904 0.92872 1.04884 1.22955 1.01437 0.95138 1.03851 0.92367 0.91741 0.93682 0.75342 0.88188 0.89305 0.87986 0.85705 0.75304 0.85542 0.85648 0.85787 0.85221 0.90897 0.89464 0.89139 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 2 C 0.09 2.36 5.47 -17.82 -0.10 2.27 16 3 Si 0.88 21.90 25.12 -169.99 -4.27 17.63 16 4 H -0.28 -6.66 7.00 56.52 0.40 -6.26 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.26 -6.25 5.40 56.52 0.30 -5.95 16 7 C -0.50 -12.86 8.07 -34.44 -0.28 -13.14 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 9 C -0.02 -0.35 1.19 -155.65 -0.19 -0.54 16 10 C 0.15 3.13 5.60 -4.04 -0.02 3.10 16 11 N -0.69 -13.23 5.29 -60.30 -0.32 -13.55 16 12 C 0.51 8.87 7.30 -10.98 -0.08 8.79 16 13 O -0.56 -11.10 14.31 5.56 0.08 -11.02 16 14 C -0.14 -1.83 5.09 -27.88 -0.14 -1.97 16 15 C -0.02 -0.30 2.06 -91.84 -0.19 -0.49 16 16 H 0.11 1.21 7.78 -51.93 -0.40 0.81 16 17 C -0.14 -1.91 5.31 -28.03 -0.15 -2.05 16 18 C 0.52 7.84 6.97 -11.18 -0.08 7.76 16 19 O -0.52 -10.09 17.91 5.55 0.10 -9.99 16 20 N -0.67 -7.84 5.36 -10.01 -0.05 -7.90 16 21 C 0.17 1.75 6.50 -83.75 -0.54 1.20 16 22 C -0.16 -1.30 9.92 -39.40 -0.39 -1.69 16 23 C -0.09 -0.65 10.04 -39.60 -0.40 -1.05 16 24 C -0.15 -1.07 10.04 -39.54 -0.40 -1.47 16 25 C -0.08 -0.66 9.69 -39.62 -0.38 -1.04 16 26 C -0.12 -1.20 4.91 -104.47 -0.51 -1.71 16 27 C -0.18 -3.42 9.88 -26.73 -0.26 -3.68 16 28 C -0.20 -4.03 7.67 -26.73 -0.21 -4.24 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.06 1.49 6.21 -51.93 -0.32 1.17 16 31 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16 32 H 0.41 7.68 7.53 -40.82 -0.31 7.38 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.26 7.50 -51.93 -0.39 0.87 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.12 2.10 6.04 -51.93 -0.31 1.78 16 37 H 0.41 4.17 8.83 -40.82 -0.36 3.81 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 43 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 44 H 0.09 1.97 7.20 -51.92 -0.37 1.60 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -32.83 365.47 -8.85 -41.68 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -6.35 Total: 13.26 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -4.32 Total: -9.96 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.40 Total: -47.10 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.18 Total: -21.02 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.27 Total: 17.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.83 -8.85 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.595 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds