Wall clock time and date at job start Sat Apr 11 2020 02:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35453 * 125.69026 * 2 1 4 4 N 1.36437 * 107.21837 * 179.97438 * 3 2 1 5 5 C 1.36725 * 132.26158 * 180.02562 * 4 3 2 6 6 C 1.34552 * 120.94975 * 179.68384 * 5 4 3 7 7 C 1.41769 * 120.14747 * 0.55299 * 6 5 4 8 8 C 1.47654 * 120.37144 * 179.74513 * 7 6 5 9 9 O 1.21588 * 119.99876 * 179.72709 * 8 7 6 10 10 N 1.34777 * 119.99915 * 359.44747 * 8 7 6 11 11 C 1.46498 * 119.99857 * 180.27992 * 10 8 7 12 12 C 1.53001 * 110.64389 * 56.85299 * 11 10 8 13 13 C 1.55157 * 110.71990 * 179.97438 * 11 10 8 14 14 C 1.54913 * 101.58161 * 82.85867 * 13 11 10 15 15 N 1.47422 * 104.83317 * 37.00948 * 14 13 11 16 16 C 1.36931 * 125.64566 * 155.90645 * 15 14 13 17 17 H 1.07996 * 120.00663 * 353.90220 * 16 15 14 18 18 C 1.38818 * 119.99809 * 173.90315 * 16 15 14 19 19 N 1.31623 * 119.99893 * 6.82526 * 18 16 15 20 20 Si 1.86798 * 120.00014 * 186.83321 * 18 16 15 21 21 H 1.48500 * 109.47688 * 94.98375 * 20 18 16 22 22 H 1.48501 * 109.47256 * 214.98210 * 20 18 16 23 23 H 1.48504 * 109.47117 * 334.98168 * 20 18 16 24 24 C 1.47027 * 108.70416 * 335.87037 * 15 14 13 25 25 C 1.38446 * 119.25718 * 359.47260 * 7 6 5 26 26 C 1.37187 * 106.97213 * 0.02562 * 4 3 2 27 27 N 1.32651 * 108.06296 * 359.97438 * 26 4 3 28 28 H 1.08997 * 109.46937 * 89.99492 * 1 2 3 29 29 H 1.08997 * 109.47246 * 209.99933 * 1 2 3 30 30 H 1.09000 * 109.46689 * 329.99456 * 1 2 3 31 31 H 1.07998 * 126.38711 * 359.96703 * 3 2 1 32 32 H 1.07996 * 119.52871 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.92152 * 180.27962 * 6 5 4 34 34 H 0.96998 * 120.00123 * 0.27278 * 10 8 7 35 35 H 1.09002 * 109.46654 * 60.70542 * 12 11 10 36 36 H 1.09003 * 109.46978 * 180.69737 * 12 11 10 37 37 H 1.08988 * 109.47015 * 300.70162 * 12 11 10 38 38 H 1.08996 * 111.00216 * 200.93386 * 13 11 10 39 39 H 1.09000 * 111.00469 * 324.74477 * 13 11 10 40 40 H 1.08999 * 110.36528 * 155.85119 * 14 13 11 41 41 H 1.09000 * 110.36574 * 278.16967 * 14 13 11 42 42 H 0.97001 * 119.99540 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.88181 * 241.64449 * 24 15 14 44 44 H 1.08998 * 109.87817 * 120.47594 * 24 15 14 45 45 H 1.07995 * 120.45425 * 180.27583 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2973 1.1001 0.0000 4 7 3.5913 0.6678 0.0006 5 6 4.7841 1.3362 0.0013 6 6 5.9518 0.6679 0.0081 7 6 5.9609 -0.7497 0.0029 8 6 7.2395 -1.4881 0.0047 9 8 7.2394 -2.7040 0.0053 10 7 8.4068 -0.8144 0.0001 11 6 9.6754 -1.5470 -0.0043 12 6 9.7465 -2.4953 -1.2029 13 6 10.8765 -0.5649 -0.0098 14 6 11.0038 -0.2207 1.4952 15 7 10.6939 -1.4793 2.1977 16 6 11.1086 -1.8118 3.4596 17 1 11.7966 -1.1693 3.9889 18 6 10.6445 -2.9748 4.0588 19 7 9.9147 -3.8249 3.3680 20 14 11.0555 -3.3333 5.8453 21 1 9.9449 -2.8646 6.7126 22 1 11.2419 -4.7953 6.0267 23 1 12.3066 -2.6249 6.2172 24 6 9.8653 -2.3178 1.3192 25 6 4.7574 -1.4341 0.0019 26 6 3.5554 -0.7036 0.0003 27 7 2.2840 -1.0817 0.0002 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9649 2.1277 -0.0005 32 1 4.7890 2.4162 0.0011 33 1 6.8843 1.2127 0.0132 34 1 8.4069 0.1556 -0.0004 35 1 9.6804 -1.9194 -2.1261 36 1 10.6912 -3.0387 -1.1807 37 1 8.9190 -3.2029 -1.1560 38 1 11.7791 -1.0536 -0.3765 39 1 10.6507 0.3252 -0.5970 40 1 12.0189 0.1025 1.7259 41 1 10.2868 0.5532 1.7693 42 1 9.5901 -4.6375 3.7868 43 1 8.8967 -2.4987 1.7851 44 1 10.3694 -3.2650 1.1275 45 1 4.7417 -2.5139 0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046616861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:09:18 Heat of formation + Delta-G solvation = 63.619526 kcal Electronic energy + Delta-G solvation = -27886.611799 eV Core-core repulsion = 24098.403006 eV Total energy + Delta-G solvation = -3788.208792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.88162 -41.36902 -39.18279 -38.04037 -35.69510 -34.76012 -33.82933 -32.76568 -31.70741 -30.31640 -29.92945 -28.43244 -27.69857 -25.67282 -24.95759 -24.09993 -22.47763 -22.07985 -21.38137 -20.55991 -19.09631 -18.84924 -18.61086 -17.64589 -17.08694 -16.98454 -16.39704 -15.97784 -15.92253 -15.67329 -15.56969 -15.15109 -14.84360 -14.32278 -14.14296 -14.07211 -14.04647 -14.00815 -13.51323 -13.35732 -13.22326 -13.13892 -12.84593 -12.79716 -12.73946 -12.44019 -12.17658 -12.03715 -11.96943 -11.87419 -11.76309 -11.53799 -11.19049 -10.84258 -10.65977 -10.02658 -9.74576 -8.90266 -8.85944 -7.83760 -5.19658 -0.60967 0.04034 1.41746 1.44216 1.53381 1.56384 1.63993 1.89651 2.05464 2.48530 2.60256 3.13575 3.33786 3.38617 3.53361 3.67239 3.74427 3.78370 3.96343 4.07101 4.20587 4.27568 4.31060 4.34879 4.58941 4.65621 4.68199 4.79841 4.85066 4.85765 4.88145 4.91049 4.99072 5.05576 5.09425 5.11325 5.20557 5.34803 5.36421 5.46402 5.50402 5.62691 5.76730 5.89165 6.02945 6.20741 6.61892 6.80345 7.08931 7.29482 7.80564 8.44111 9.25043 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.003145 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.176416 B = 8900.042014 C = 9759.839790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.031 3.969 3 C -0.075 4.075 4 N -0.356 5.356 5 C 0.066 3.934 6 C -0.121 4.121 7 C -0.116 4.116 8 C 0.554 3.446 9 O -0.568 6.568 10 N -0.686 5.686 11 C 0.151 3.849 12 C -0.143 4.143 13 C -0.114 4.114 14 C 0.123 3.877 15 N -0.629 5.629 16 C -0.238 4.238 17 H 0.088 0.912 18 C -0.072 4.072 19 N -0.949 5.949 20 Si 0.974 3.026 21 H -0.291 1.291 22 H -0.299 1.299 23 H -0.260 1.260 24 C 0.196 3.804 25 C -0.034 4.034 26 C 0.185 3.815 27 N -0.524 5.524 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.233 0.767 32 H 0.224 0.776 33 H 0.191 0.809 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.050 0.950 41 H 0.035 0.965 42 H 0.241 0.759 43 H 0.006 0.994 44 H 0.000 1.000 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.003 19.981 -12.464 26.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C -0.207 4.207 4 N -0.027 5.027 5 C -0.054 4.054 6 C -0.142 4.142 7 C -0.125 4.125 8 C 0.342 3.658 9 O -0.447 6.447 10 N -0.339 5.339 11 C 0.064 3.936 12 C -0.201 4.201 13 C -0.152 4.152 14 C -0.001 4.001 15 N -0.356 5.356 16 C -0.367 4.367 17 H 0.106 0.894 18 C -0.265 4.265 19 N -0.598 5.598 20 Si 0.803 3.197 21 H -0.219 1.219 22 H -0.227 1.227 23 H -0.184 1.184 24 C 0.069 3.931 25 C -0.056 4.056 26 C -0.056 4.056 27 N -0.246 5.246 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.249 0.751 32 H 0.240 0.760 33 H 0.208 0.792 34 H 0.252 0.748 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.139 0.861 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.018 0.982 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.251 18.240 -12.320 25.190 hybrid contribution 0.426 -0.397 1.364 1.483 sum -11.824 17.843 -10.956 24.047 Atomic orbital electron populations 1.20261 0.84441 1.04148 1.03756 1.21766 0.98699 0.87761 1.02074 1.23272 0.79572 1.02637 1.15219 1.43084 1.07726 1.07816 1.44116 1.22291 0.81112 1.00825 1.01219 1.21174 0.99982 0.91164 1.01851 1.19958 0.91867 0.95248 1.05399 1.18290 0.84422 0.86891 0.76207 1.90804 1.87850 1.15494 1.50558 1.45590 1.04048 1.10391 1.73856 1.21508 0.83496 0.93389 0.95173 1.21939 1.02097 0.99370 0.96682 1.23042 0.96258 0.99389 0.96515 1.21874 0.98699 0.88128 0.91444 1.44831 1.60208 1.16359 1.14219 1.19482 1.21475 1.05091 0.90702 0.89411 1.25739 1.00760 0.97682 1.02325 1.70280 1.41759 1.11681 1.36044 0.85116 0.78008 0.76520 0.80090 1.21880 1.22659 1.18417 1.21104 0.93188 0.91176 0.87588 1.20520 0.87886 1.00531 0.96658 1.20559 0.93754 0.81995 1.09292 1.70531 0.99076 1.31854 1.23176 0.89615 0.91840 0.87774 0.75073 0.75950 0.79220 0.74809 0.89840 0.92086 0.93376 0.89533 0.86106 0.93160 0.94761 0.94968 0.97567 0.98200 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.42 71.24 0.74 -0.20 16 2 C 0.03 0.68 7.06 41.71 0.29 0.97 16 3 C -0.07 -1.23 11.64 83.33 0.97 -0.26 16 4 N -0.36 -7.43 2.94 -352.43 -1.04 -8.47 16 5 C 0.07 0.91 10.91 83.09 0.91 1.81 16 6 C -0.12 -2.10 9.48 22.30 0.21 -1.88 16 7 C -0.12 -3.33 5.90 -19.87 -0.12 -3.45 16 8 C 0.55 19.97 6.99 86.73 0.61 20.58 16 9 O -0.57 -26.62 13.36 -3.99 -0.05 -26.68 16 10 N -0.69 -20.72 5.10 -420.54 -2.14 -22.87 16 11 C 0.15 5.41 0.81 4.79 0.00 5.42 16 12 C -0.14 -4.86 8.38 71.98 0.60 -4.26 16 13 C -0.11 -3.18 6.07 31.99 0.19 -2.98 16 14 C 0.12 4.45 7.21 86.86 0.63 5.08 16 15 N -0.63 -32.20 3.39 -691.98 -2.35 -34.55 16 16 C -0.24 -13.55 10.26 84.04 0.86 -12.69 16 17 H 0.09 4.67 7.84 -2.91 -0.02 4.65 16 18 C -0.07 -4.31 5.48 84.86 0.47 -3.84 16 19 N -0.95 -61.66 10.36 21.65 0.22 -61.43 16 20 Si 0.97 47.82 29.56 68.60 2.03 49.85 16 21 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 22 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 C 0.20 10.14 4.33 86.73 0.38 10.51 16 25 C -0.03 -1.12 9.70 22.91 0.22 -0.90 16 26 C 0.18 5.57 7.79 133.97 1.04 6.61 16 27 N -0.52 -16.46 11.31 -182.45 -2.06 -18.53 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.23 1.30 8.06 -2.91 -0.02 1.27 16 32 H 0.22 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.19 1.72 6.46 -2.91 -0.02 1.70 16 34 H 0.41 8.45 6.55 -92.71 -0.61 7.84 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 37 H 0.05 1.96 6.03 -2.39 -0.01 1.95 16 38 H 0.09 2.40 8.05 -2.39 -0.02 2.38 16 39 H 0.12 2.12 8.07 -2.39 -0.02 2.10 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.24 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.01 0.38 6.13 -2.39 -0.01 0.36 16 44 H 0.00 -0.01 7.22 -2.39 -0.02 -0.03 16 45 H 0.14 5.03 7.67 -2.91 -0.02 5.00 16 Total: -1.00 -91.76 365.19 3.03 -88.74 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.41 Total: 13.43 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 8.01 Total: 20.51 kcal Atomic # 7 Polarization: -138.48 SS G_CDS: -7.37 Total: -145.85 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -91.76 3.03 -88.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046616861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.355 kcal (2) G-P(sol) polarization free energy of solvation -91.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds