Wall clock time and date at job start Sat Apr 11 2020 02:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28387 * 124.37678 * 2 1 4 4 C 1.31566 * 111.97021 * 180.02562 * 3 2 1 5 5 C 1.47389 * 126.82549 * 180.02562 * 4 3 2 6 6 O 1.21618 * 120.00212 * 179.97438 * 5 4 3 7 7 N 1.34773 * 120.00146 * 0.02562 * 5 4 3 8 8 C 1.46499 * 120.00533 * 180.02562 * 7 5 4 9 9 C 1.52996 * 110.88679 * 62.41837 * 8 7 5 10 10 C 1.55155 * 111.00487 * 186.34926 * 8 7 5 11 11 C 1.54317 * 102.94481 * 82.56933 * 10 8 7 12 12 N 1.47029 * 107.27083 * 22.19022 * 11 10 8 13 13 C 1.36936 * 125.64653 * 181.02357 * 12 11 10 14 14 H 1.07995 * 120.00288 * 180.02562 * 13 12 11 15 15 C 1.38812 * 120.00067 * 0.04088 * 13 12 11 16 16 N 1.31623 * 120.00045 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00057 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47453 * 90.00141 * 17 15 13 19 19 H 1.48499 * 109.47266 * 210.00541 * 17 15 13 20 20 H 1.48503 * 109.47128 * 329.99939 * 17 15 13 21 21 C 1.47418 * 108.70409 * 1.06284 * 12 11 10 22 22 C 1.46885 * 106.35246 * 359.97438 * 4 3 2 23 23 C 1.39193 * 135.56366 * 179.97438 * 22 4 3 24 24 C 1.36718 * 119.51366 * 180.02562 * 23 22 4 25 25 C 1.38898 * 120.52033 * 0.02562 * 24 23 22 26 26 C 1.36685 * 120.89803 * 359.97438 * 25 24 23 27 27 C 1.37046 * 124.37192 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46710 * 89.97740 * 1 2 3 29 29 H 1.08990 * 109.47767 * 209.97765 * 1 2 3 30 30 H 1.09003 * 109.47057 * 329.98379 * 1 2 3 31 31 H 0.97004 * 120.00038 * 359.97438 * 7 5 4 32 32 H 1.09000 * 109.46918 * 60.70985 * 9 8 7 33 33 H 1.08998 * 109.47233 * 180.70196 * 9 8 7 34 34 H 1.08995 * 109.47634 * 300.70549 * 9 8 7 35 35 H 1.09000 * 110.71456 * 200.93184 * 10 8 7 36 36 H 1.08993 * 110.72009 * 324.20052 * 10 8 7 37 37 H 1.08994 * 109.88241 * 262.77469 * 11 10 8 38 38 H 1.08998 * 109.88260 * 141.60939 * 11 10 8 39 39 H 0.96997 * 119.99730 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.36628 * 217.03386 * 21 12 11 41 41 H 1.08996 * 110.46283 * 94.75696 * 21 12 11 42 42 H 1.08000 * 120.24418 * 359.97438 * 23 22 4 43 43 H 1.07994 * 119.74355 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.55396 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.11122 * 179.72894 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1899 1.0596 0.0000 4 6 3.4748 0.7770 -0.0005 5 6 4.5911 1.7394 -0.0002 6 8 5.7394 1.3388 -0.0003 7 7 4.3393 3.0634 0.0013 8 6 5.4488 4.0201 0.0011 9 6 6.2928 3.8763 -1.2668 10 6 4.9300 5.4734 0.1632 11 6 4.7409 5.6047 1.6891 12 7 5.5958 4.5909 2.3238 13 6 5.7009 4.3652 3.6703 14 1 6.3604 3.5934 4.0387 15 6 4.9596 5.1283 4.5619 16 7 4.1552 6.0685 4.1131 17 14 5.1024 4.8200 6.3988 18 1 6.1856 5.6667 6.9601 19 1 3.8164 5.1592 7.0592 20 1 5.4189 3.3889 6.6373 21 6 6.3218 3.8581 1.2706 22 6 3.5759 -0.6884 -0.0003 23 6 4.6165 -1.6129 -0.0011 24 6 4.3298 -2.9496 -0.0011 25 6 3.0119 -3.3884 -0.0008 26 6 1.9755 -2.4974 -0.0001 27 6 2.2387 -1.1312 -0.0005 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3633 0.8899 0.5141 31 1 3.4234 3.3830 0.0018 32 1 5.6723 4.0747 -2.1408 33 1 7.1171 4.5888 -1.2374 34 1 6.6902 2.8631 -1.3259 35 1 5.6692 6.1890 -0.1968 36 1 3.9805 5.6040 -0.3558 37 1 3.6978 5.4261 1.9500 38 1 5.0415 6.6003 2.0155 39 1 3.6369 6.6014 4.7361 40 1 6.4138 2.8049 1.5358 41 1 7.3071 4.2961 1.1117 42 1 5.6428 -1.2766 -0.0025 43 1 5.1343 -3.6701 -0.0012 44 1 2.8033 -4.4481 -0.0012 45 1 0.9556 -2.8526 -0.0044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046787491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:09:28 Heat of formation + Delta-G solvation = 68.016893 kcal Electronic energy + Delta-G solvation = -28329.019510 eV Core-core repulsion = 24541.001402 eV Total energy + Delta-G solvation = -3788.018108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.49772 -41.10243 -38.79712 -38.73064 -35.69284 -34.69042 -33.57254 -31.77928 -31.50125 -31.04893 -30.37797 -28.18527 -27.52429 -25.54435 -24.85568 -23.71294 -23.03024 -22.19966 -21.23778 -20.42831 -19.21224 -18.68121 -18.14236 -17.35756 -17.13995 -16.98851 -16.63961 -16.18740 -15.97097 -15.60710 -15.48032 -15.08955 -15.03740 -14.58851 -14.19829 -13.94269 -13.88910 -13.59056 -13.54618 -13.41768 -13.11205 -12.91618 -12.85784 -12.82180 -12.77325 -12.22117 -12.12615 -12.07171 -12.04210 -11.92031 -11.72034 -11.58056 -10.98524 -10.86640 -10.72237 -10.04198 -9.77351 -8.97922 -8.86499 -7.87052 -5.20687 -0.20322 0.37434 0.87456 1.40434 1.40883 1.42651 1.51214 2.09705 2.29828 2.46533 2.81988 3.18327 3.30941 3.42564 3.54891 3.68791 3.79286 4.03859 4.07827 4.14870 4.18016 4.33659 4.37344 4.44040 4.49572 4.62591 4.62905 4.68821 4.76653 4.78785 4.86798 4.92741 5.01930 5.03837 5.07418 5.22697 5.35613 5.40751 5.46397 5.57047 5.61984 5.66165 5.73235 5.75921 5.99061 6.18696 6.47798 6.80343 7.10219 7.19979 7.76130 8.40755 9.22965 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.003838 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.744268 B = 7293.818834 C = 8006.221097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.311 5.311 3 N -0.216 5.216 4 C -0.036 4.036 5 C 0.605 3.395 6 O -0.558 6.558 7 N -0.687 5.687 8 C 0.164 3.836 9 C -0.139 4.139 10 C -0.128 4.128 11 C 0.186 3.814 12 N -0.622 5.622 13 C -0.243 4.243 14 H 0.068 0.932 15 C -0.059 4.059 16 N -0.945 5.945 17 Si 0.974 3.026 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.128 3.872 22 C -0.139 4.139 23 C -0.076 4.076 24 C -0.132 4.132 25 C -0.081 4.081 26 C -0.111 4.111 27 C 0.048 3.952 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.407 0.593 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.247 0.753 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.118 0.882 43 H 0.154 0.846 44 H 0.173 0.827 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 -17.072 -14.409 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.106 5.106 3 N -0.048 5.048 4 C -0.204 4.204 5 C 0.390 3.610 6 O -0.435 6.435 7 N -0.336 5.336 8 C 0.078 3.922 9 C -0.197 4.197 10 C -0.166 4.166 11 C 0.062 3.938 12 N -0.348 5.348 13 C -0.372 4.372 14 H 0.086 0.914 15 C -0.253 4.253 16 N -0.594 5.594 17 Si 0.802 3.198 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.203 1.203 21 C 0.002 3.998 22 C -0.146 4.146 23 C -0.096 4.096 24 C -0.151 4.151 25 C -0.102 4.102 26 C -0.132 4.132 27 C -0.064 4.064 28 H 0.122 0.878 29 H 0.140 0.860 30 H 0.116 0.884 31 H 0.242 0.758 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.136 0.864 43 H 0.172 0.828 44 H 0.190 0.810 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.255 -16.337 -14.220 23.554 hybrid contribution 0.237 0.036 1.474 1.493 sum -9.018 -16.300 -12.747 22.572 Atomic orbital electron populations 1.22558 0.70215 1.06949 1.06039 1.45640 1.08640 1.00272 1.56011 1.72805 1.03727 1.15201 1.13062 1.22723 0.90511 0.93166 1.14022 1.16834 0.86506 0.81709 0.75929 1.90697 1.21477 1.79334 1.51964 1.45644 1.10328 1.04549 1.73120 1.21482 0.87010 0.88515 0.95228 1.21918 0.99789 1.03024 0.95002 1.23109 1.02804 0.94060 0.96618 1.20925 0.93219 0.91059 0.88640 1.44691 1.49383 1.39385 1.01307 1.19333 1.20912 1.14741 0.82204 0.91447 1.25532 0.99180 0.98495 1.02059 1.70158 1.31087 1.24721 1.33480 0.85152 0.76858 0.77627 0.80149 1.20849 1.21507 1.20324 1.22003 0.94095 0.95222 0.88467 1.19751 0.94999 0.91409 1.08451 1.20470 0.97957 0.93120 0.98094 1.21213 0.98684 0.94283 1.00920 1.21229 0.91097 1.01348 0.96499 1.20262 1.02328 0.86692 1.03931 1.19564 0.89632 0.91394 1.05778 0.87844 0.85996 0.88367 0.75794 0.90568 0.90045 0.92435 0.88364 0.88783 0.96886 0.96999 0.94329 0.95129 0.95100 0.86380 0.82790 0.80987 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 11.24 127.77 1.44 2.46 16 2 N -0.31 -7.77 3.74 -361.14 -1.35 -9.12 16 3 N -0.22 -7.00 11.52 -44.88 -0.52 -7.52 16 4 C -0.04 -1.32 7.32 43.86 0.32 -1.00 16 5 C 0.60 24.38 7.20 86.65 0.62 25.01 16 6 O -0.56 -24.60 13.17 -4.09 -0.05 -24.65 16 7 N -0.69 -26.00 5.17 -419.89 -2.17 -28.17 16 8 C 0.16 6.17 0.82 5.00 0.00 6.17 16 9 C -0.14 -4.25 8.62 71.98 0.62 -3.63 16 10 C -0.13 -4.63 5.99 31.78 0.19 -4.44 16 11 C 0.19 9.40 5.36 86.73 0.47 9.87 16 12 N -0.62 -34.34 3.39 -692.01 -2.35 -36.68 16 13 C -0.24 -14.74 10.28 84.03 0.86 -13.88 16 14 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 15 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 16 N -0.95 -58.21 10.31 21.65 0.22 -57.98 16 17 Si 0.97 48.25 29.55 68.60 2.03 50.28 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 21 C 0.13 6.06 6.11 86.86 0.53 6.59 16 22 C -0.14 -4.52 6.34 -20.14 -0.13 -4.65 16 23 C -0.08 -2.20 9.87 22.14 0.22 -1.98 16 24 C -0.13 -2.60 9.98 22.07 0.22 -2.38 16 25 C -0.08 -1.20 9.96 22.06 0.22 -0.98 16 26 C -0.11 -1.83 9.94 22.12 0.22 -1.61 16 27 C 0.05 1.22 6.85 39.19 0.27 1.49 16 28 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.12 0.79 8.09 -2.39 -0.02 0.77 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.41 14.54 8.22 -92.71 -0.76 13.78 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 2.21 8.13 -2.39 -0.02 2.19 16 34 H 0.06 1.96 6.45 -2.39 -0.02 1.95 16 35 H 0.10 3.13 8.04 -2.39 -0.02 3.11 16 36 H 0.09 2.88 8.05 -2.39 -0.02 2.87 16 37 H 0.01 0.72 7.38 -2.39 -0.02 0.71 16 38 H 0.01 0.66 7.51 -2.39 -0.02 0.64 16 39 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.03 1.59 6.31 -2.39 -0.02 1.58 16 41 H 0.03 1.43 8.03 -2.39 -0.02 1.41 16 42 H 0.12 3.74 7.65 -2.91 -0.02 3.72 16 43 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 45 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -82.24 368.15 2.60 -79.64 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.25 Total: 20.26 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 6.54 Total: 13.95 kcal Atomic # 7 Polarization: -133.31 SS G_CDS: -6.16 Total: -139.47 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -82.24 2.60 -79.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046787491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.660 kcal (2) G-P(sol) polarization free energy of solvation -82.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds