Wall clock time and date at job start Sat Apr 11 2020 02:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.99488 * 2 1 4 4 C 1.54322 * 109.88287 * 238.90962 * 2 1 3 5 5 C 1.55156 * 102.94171 * 262.77232 * 4 2 1 6 6 H 1.09000 * 111.03939 * 82.58356 * 5 4 2 7 7 N 1.46497 * 111.00707 * 206.42408 * 5 4 2 8 8 C 1.36935 * 120.00298 * 198.64916 * 7 5 4 9 9 H 1.08003 * 119.99995 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00267 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00268 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 60.00531 * 12 10 8 14 14 H 1.48503 * 109.47399 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47295 * 300.00628 * 12 10 8 16 16 C 1.54911 * 101.58060 * 324.49997 * 5 4 2 17 17 N 1.47023 * 109.88465 * 121.09438 * 2 1 3 18 18 C 1.34767 * 125.65180 * 300.51587 * 17 2 1 19 19 O 1.21280 * 120.00379 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00230 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.47239 * 179.97438 * 20 18 17 22 22 C 1.38261 * 120.00138 * 269.72580 * 21 20 18 23 23 C 1.38205 * 119.99788 * 179.81084 * 22 21 20 24 24 C 1.38257 * 120.00465 * 0.39901 * 23 22 21 25 25 C 1.38214 * 119.99648 * 359.85274 * 24 23 22 26 26 C 1.50701 * 119.99837 * 179.97438 * 25 24 23 27 27 C 1.53003 * 117.50047 * 8.72757 * 26 25 24 28 28 C 1.52998 * 117.49878 * 300.06836 * 26 25 24 29 29 C 1.38213 * 119.99713 * 89.99974 * 21 20 18 30 30 H 1.08999 * 109.47023 * 300.35289 * 1 2 3 31 31 H 1.08994 * 109.47360 * 60.35546 * 1 2 3 32 32 H 1.09006 * 109.46884 * 180.35953 * 1 2 3 33 33 H 1.08997 * 110.72302 * 144.41196 * 4 2 1 34 34 H 1.08998 * 110.72242 * 21.13477 * 4 2 1 35 35 H 0.96992 * 120.00013 * 18.64815 * 7 5 4 36 36 H 0.97000 * 119.99327 * 359.97438 * 11 10 8 37 37 H 1.09007 * 110.37029 * 155.85055 * 16 5 4 38 38 H 1.09008 * 110.36507 * 278.16710 * 16 5 4 39 39 H 1.09008 * 109.46779 * 299.99941 * 20 18 17 40 40 H 1.08993 * 109.46905 * 59.99947 * 20 18 17 41 41 H 1.07995 * 119.99450 * 359.97438 * 22 21 20 42 42 H 1.08006 * 120.00229 * 180.23364 * 23 22 21 43 43 H 1.07995 * 120.00408 * 179.83762 * 24 23 22 44 44 H 1.09004 * 115.55195 * 154.39888 * 26 25 24 45 45 H 1.08998 * 117.49455 * 0.02562 * 27 26 25 46 46 H 1.08998 * 117.50039 * 145.01806 * 27 26 25 47 47 H 1.09001 * 117.49783 * 214.97900 * 28 26 25 48 48 H 1.09000 * 117.50249 * 359.97438 * 28 26 25 49 49 H 1.07999 * 120.00294 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2428 5 6 2.3519 -2.1694 -0.6925 6 1 1.4457 -2.7742 -0.6605 7 7 3.3938 -2.8311 -1.4818 8 6 3.5390 -4.1913 -1.4206 9 1 2.8857 -4.7764 -0.7902 10 6 4.5258 -4.8183 -2.1689 11 7 5.3223 -4.1054 -2.9368 12 14 4.7243 -6.6739 -2.0849 13 1 3.4672 -7.3268 -2.5304 14 1 5.8408 -7.0929 -2.9700 15 1 5.0232 -7.0770 -0.6873 16 6 2.8569 -1.8497 0.7367 17 7 2.0301 -0.7140 1.1839 18 6 1.7743 -0.3853 2.4656 19 8 1.0771 0.5743 2.7181 20 6 2.3548 -1.2102 3.5853 21 6 1.9215 -0.6356 4.9094 22 6 2.6962 0.3249 5.5329 23 6 2.2967 0.8547 6.7453 24 6 1.1268 0.4181 7.3387 25 6 0.3550 -0.5459 6.7179 26 6 -0.9200 -1.0221 7.3649 27 6 -1.4130 -0.2624 8.5981 28 6 -0.8127 -1.6623 8.7504 29 6 0.7526 -1.0731 5.5031 30 1 -0.3633 0.5193 0.8868 31 1 -0.3634 0.5083 -0.8931 32 1 -0.3633 -1.0277 0.0064 33 1 2.9656 -0.2830 -1.6183 34 1 1.2918 -0.7889 -2.0201 35 1 3.9807 -2.3057 -2.0477 36 1 5.2194 -3.1419 -2.9801 37 1 2.7089 -2.7080 1.3922 38 1 3.9093 -1.5666 0.7127 39 1 2.0003 -2.2376 3.5012 40 1 3.4427 -1.1949 3.5216 41 1 3.6120 0.6631 5.0712 42 1 2.8999 1.6078 7.2306 43 1 0.8160 0.8302 8.2873 44 1 -1.6730 -1.4191 6.6841 45 1 -0.8153 0.5821 8.9411 46 1 -2.4902 -0.1598 8.7287 47 1 -1.4954 -2.4801 8.9812 48 1 0.1800 -1.7394 9.1938 49 1 0.1495 -1.8263 5.0181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989228724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:12:04 Heat of formation + Delta-G solvation = 23.548797 kcal Electronic energy + Delta-G solvation = -27421.591758 eV Core-core repulsion = 23735.185712 eV Total energy + Delta-G solvation = -3686.406046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.33575 -39.57049 -37.66240 -36.81072 -34.51276 -32.93005 -31.60039 -31.28065 -30.87759 -28.19707 -27.48350 -25.52273 -24.00920 -23.72527 -22.91938 -22.41178 -21.77260 -20.47318 -19.72646 -18.66661 -17.55540 -17.08699 -16.92643 -16.16182 -15.66361 -15.45800 -15.11507 -14.73505 -14.45881 -14.26535 -14.00412 -13.72231 -13.45709 -13.29927 -13.10154 -13.01731 -12.68714 -12.49890 -12.37383 -12.25573 -11.93592 -11.82254 -11.75335 -11.31909 -11.10135 -11.06490 -10.99050 -10.84744 -10.73684 -10.61566 -10.58173 -10.27427 -10.05103 -9.69004 -9.28021 -9.07358 -8.82156 -8.58456 -8.40402 -7.21185 -6.22126 -3.24915 1.22464 1.31984 2.80413 3.12448 3.45449 3.46730 3.48610 3.66362 3.88939 4.27379 4.54821 4.55287 4.64653 4.70424 4.70984 4.81359 4.90103 4.99744 5.05424 5.10362 5.17552 5.24151 5.28526 5.36408 5.38443 5.48133 5.49284 5.54309 5.55609 5.60415 5.76252 5.76669 5.77716 5.78635 5.92325 5.95342 5.98802 6.03261 6.11725 6.18790 6.34287 6.37717 6.43264 6.48189 6.54516 6.58980 6.74225 6.92063 7.68279 7.76729 8.35729 8.63357 9.06965 9.93639 10.06877 11.25564 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.002523 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.791911 B =11096.913344 C =11981.991507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.069 0.931 4 C -0.138 4.138 5 C 0.179 3.821 6 H 0.065 0.935 7 N -0.724 5.724 8 C -0.340 4.340 9 H 0.067 0.933 10 C -0.040 4.040 11 N -0.939 5.939 12 Si 1.079 2.921 13 H -0.294 1.294 14 H -0.284 1.284 15 H -0.294 1.294 16 C 0.073 3.927 17 N -0.611 5.611 18 C 0.530 3.470 19 O -0.542 6.542 20 C -0.101 4.101 21 C -0.054 4.054 22 C -0.109 4.109 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.053 4.053 26 C -0.116 4.116 27 C -0.178 4.178 28 C -0.170 4.170 29 C -0.098 4.098 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.370 0.630 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.899 8.365 19.277 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.087 0.913 4 C -0.177 4.177 5 C 0.067 3.933 6 H 0.083 0.917 7 N -0.366 5.366 8 C -0.471 4.471 9 H 0.085 0.915 10 C -0.238 4.238 11 N -0.583 5.583 12 Si 0.910 3.090 13 H -0.221 1.221 14 H -0.210 1.210 15 H -0.221 1.221 16 C -0.053 4.053 17 N -0.345 5.345 18 C 0.318 3.682 19 O -0.420 6.420 20 C -0.141 4.141 21 C -0.054 4.054 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.143 4.143 25 C -0.053 4.053 26 C -0.134 4.134 27 C -0.215 4.215 28 C -0.207 4.207 29 C -0.116 4.116 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.204 0.796 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.130 0.870 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.514 7.426 19.009 22.517 hybrid contribution -0.627 1.416 0.378 1.594 sum -10.141 8.843 19.387 23.598 Atomic orbital electron populations 1.22128 0.95007 1.02255 1.02470 1.21454 0.94411 0.95844 0.84639 0.91305 1.22996 1.01632 0.96958 0.96097 1.21202 0.92505 0.91031 0.88563 0.91705 1.42329 1.37419 1.05070 1.51758 1.20028 1.17241 0.83279 1.26511 0.91542 1.25808 0.94747 1.06843 0.96400 1.70899 1.39877 1.07103 1.40451 0.83256 0.75990 0.74004 0.75794 1.22145 1.20975 1.22120 1.23465 0.94884 0.87156 0.99748 1.48650 1.50469 1.30874 1.04553 1.20091 0.80818 0.85006 0.82255 1.90676 1.38935 1.29010 1.83369 1.20673 1.02756 1.00223 0.90414 1.19278 0.95006 0.96719 0.94442 1.20975 0.99874 0.96447 0.95427 1.21025 0.96696 0.99884 0.95748 1.20958 0.95259 0.97822 1.00230 1.19028 0.94772 0.96660 0.94796 1.21032 0.96979 1.04712 0.90677 1.23068 1.01198 0.95575 1.01617 1.23033 1.02741 0.96275 0.98630 1.20748 0.95875 1.00116 0.94835 0.91390 0.92017 0.92496 0.90765 0.90125 0.79590 0.93293 0.91203 0.91334 0.87943 0.87972 0.86272 0.86139 0.86271 0.86997 0.88385 0.88497 0.88491 0.88586 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.06 37.16 0.34 -1.89 16 2 C 0.14 2.08 3.49 -66.95 -0.23 1.85 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.14 -2.13 6.12 -24.90 -0.15 -2.28 16 5 C 0.18 3.30 3.69 -65.78 -0.24 3.06 16 6 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 7 N -0.72 -16.76 5.27 -51.35 -0.27 -17.03 16 8 C -0.34 -8.94 9.98 -15.06 -0.15 -9.09 16 9 H 0.07 1.72 7.83 -52.48 -0.41 1.30 16 10 C -0.04 -1.10 5.50 -17.43 -0.10 -1.19 16 11 N -0.94 -27.79 13.70 55.49 0.76 -27.03 16 12 Si 1.08 24.76 29.92 -169.99 -5.09 19.67 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.07 1.21 6.39 -2.53 -0.02 1.19 16 17 N -0.61 -9.45 3.08 -163.01 -0.50 -9.95 16 18 C 0.53 8.25 7.62 -10.99 -0.08 8.17 16 19 O -0.54 -9.92 14.93 5.56 0.08 -9.83 16 20 C -0.10 -1.28 4.84 -29.03 -0.14 -1.42 16 21 C -0.05 -0.70 4.37 -104.62 -0.46 -1.15 16 22 C -0.11 -1.32 9.70 -39.59 -0.38 -1.71 16 23 C -0.12 -1.26 10.05 -39.59 -0.40 -1.65 16 24 C -0.12 -1.33 9.30 -39.58 -0.37 -1.70 16 25 C -0.05 -0.60 5.61 -104.62 -0.59 -1.18 16 26 C -0.12 -1.07 6.04 -91.77 -0.55 -1.63 16 27 C -0.18 -1.34 9.86 -26.69 -0.26 -1.61 16 28 C -0.17 -1.29 10.17 -26.69 -0.27 -1.56 16 29 C -0.10 -1.21 9.39 -39.58 -0.37 -1.59 16 30 H 0.07 1.04 6.74 -51.93 -0.35 0.69 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 34 H 0.08 1.17 7.83 -51.93 -0.41 0.76 16 35 H 0.37 8.86 6.54 -40.82 -0.27 8.59 16 36 H 0.26 7.42 6.77 -40.82 -0.28 7.14 16 37 H 0.07 1.11 7.48 -51.92 -0.39 0.73 16 38 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 39 H 0.10 1.17 7.79 -51.92 -0.40 0.77 16 40 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 43 H 0.12 1.02 6.02 -52.49 -0.32 0.70 16 44 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.10 0.70 6.18 -51.93 -0.32 0.38 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -31.49 396.10 -11.32 -42.81 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -7.84 Total: 10.78 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -4.43 Total: -15.39 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.01 Total: -54.01 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.09 Total: 19.67 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.49 -11.32 -42.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989228724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.359 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds