Wall clock time and date at job start Sat Apr 11 2020 02:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.99488 * 2 1 4 4 C 1.54322 * 109.88287 * 238.90962 * 2 1 3 5 5 C 1.55156 * 102.94171 * 262.77232 * 4 2 1 6 6 H 1.09000 * 111.03939 * 82.58356 * 5 4 2 7 7 N 1.46497 * 111.00707 * 206.42408 * 5 4 2 8 8 C 1.36935 * 120.00298 * 198.64916 * 7 5 4 9 9 H 1.08003 * 119.99995 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00267 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00268 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 60.00531 * 12 10 8 14 14 H 1.48503 * 109.47399 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47295 * 300.00628 * 12 10 8 16 16 C 1.54911 * 101.58060 * 324.49997 * 5 4 2 17 17 N 1.47023 * 109.88465 * 121.09438 * 2 1 3 18 18 C 1.34767 * 125.65180 * 300.51587 * 17 2 1 19 19 O 1.21280 * 120.00379 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00230 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.47239 * 179.97438 * 20 18 17 22 22 C 1.38261 * 120.00138 * 269.72580 * 21 20 18 23 23 C 1.38205 * 119.99788 * 179.81084 * 22 21 20 24 24 C 1.38257 * 120.00465 * 0.39901 * 23 22 21 25 25 C 1.38214 * 119.99648 * 359.85274 * 24 23 22 26 26 C 1.50701 * 119.99837 * 179.97438 * 25 24 23 27 27 C 1.53003 * 117.50047 * 8.72757 * 26 25 24 28 28 C 1.52998 * 117.49878 * 300.06836 * 26 25 24 29 29 C 1.38213 * 119.99713 * 89.99974 * 21 20 18 30 30 H 1.08999 * 109.47023 * 300.35289 * 1 2 3 31 31 H 1.08994 * 109.47360 * 60.35546 * 1 2 3 32 32 H 1.09006 * 109.46884 * 180.35953 * 1 2 3 33 33 H 1.08997 * 110.72302 * 144.41196 * 4 2 1 34 34 H 1.08998 * 110.72242 * 21.13477 * 4 2 1 35 35 H 0.96992 * 120.00013 * 18.64815 * 7 5 4 36 36 H 0.97000 * 119.99327 * 359.97438 * 11 10 8 37 37 H 1.09007 * 110.37029 * 155.85055 * 16 5 4 38 38 H 1.09008 * 110.36507 * 278.16710 * 16 5 4 39 39 H 1.09008 * 109.46779 * 299.99941 * 20 18 17 40 40 H 1.08993 * 109.46905 * 59.99947 * 20 18 17 41 41 H 1.07995 * 119.99450 * 359.97438 * 22 21 20 42 42 H 1.08006 * 120.00229 * 180.23364 * 23 22 21 43 43 H 1.07995 * 120.00408 * 179.83762 * 24 23 22 44 44 H 1.09004 * 115.55195 * 154.39888 * 26 25 24 45 45 H 1.08998 * 117.49455 * 0.02562 * 27 26 25 46 46 H 1.08998 * 117.50039 * 145.01806 * 27 26 25 47 47 H 1.09001 * 117.49783 * 214.97900 * 28 26 25 48 48 H 1.09000 * 117.50249 * 359.97438 * 28 26 25 49 49 H 1.07999 * 120.00294 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2428 5 6 2.3519 -2.1694 -0.6925 6 1 1.4457 -2.7742 -0.6605 7 7 3.3938 -2.8311 -1.4818 8 6 3.5390 -4.1913 -1.4206 9 1 2.8857 -4.7764 -0.7902 10 6 4.5258 -4.8183 -2.1689 11 7 5.3223 -4.1054 -2.9368 12 14 4.7243 -6.6739 -2.0849 13 1 3.4672 -7.3268 -2.5304 14 1 5.8408 -7.0929 -2.9700 15 1 5.0232 -7.0770 -0.6873 16 6 2.8569 -1.8497 0.7367 17 7 2.0301 -0.7140 1.1839 18 6 1.7743 -0.3853 2.4656 19 8 1.0771 0.5743 2.7181 20 6 2.3548 -1.2102 3.5853 21 6 1.9215 -0.6356 4.9094 22 6 2.6962 0.3249 5.5329 23 6 2.2967 0.8547 6.7453 24 6 1.1268 0.4181 7.3387 25 6 0.3550 -0.5459 6.7179 26 6 -0.9200 -1.0221 7.3649 27 6 -1.4130 -0.2624 8.5981 28 6 -0.8127 -1.6623 8.7504 29 6 0.7526 -1.0731 5.5031 30 1 -0.3633 0.5193 0.8868 31 1 -0.3634 0.5083 -0.8931 32 1 -0.3633 -1.0277 0.0064 33 1 2.9656 -0.2830 -1.6183 34 1 1.2918 -0.7889 -2.0201 35 1 3.9807 -2.3057 -2.0477 36 1 5.2194 -3.1419 -2.9801 37 1 2.7089 -2.7080 1.3922 38 1 3.9093 -1.5666 0.7127 39 1 2.0003 -2.2376 3.5012 40 1 3.4427 -1.1949 3.5216 41 1 3.6120 0.6631 5.0712 42 1 2.8999 1.6078 7.2306 43 1 0.8160 0.8302 8.2873 44 1 -1.6730 -1.4191 6.6841 45 1 -0.8153 0.5821 8.9411 46 1 -2.4902 -0.1598 8.7287 47 1 -1.4954 -2.4801 8.9812 48 1 0.1800 -1.7394 9.1938 49 1 0.1495 -1.8263 5.0181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989228724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:12:03 Heat of formation + Delta-G solvation = 8.203252 kcal Electronic energy + Delta-G solvation = -27422.257191 eV Core-core repulsion = 23735.185712 eV Total energy + Delta-G solvation = -3687.071479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49066 -40.53172 -38.90699 -37.64319 -36.30337 -33.97837 -33.21555 -32.55704 -31.70526 -29.80160 -28.51178 -26.80488 -25.68542 -24.75081 -23.84436 -23.25951 -22.78955 -21.81038 -20.69653 -19.85504 -19.48363 -18.21311 -17.88650 -17.16133 -16.91596 -16.67922 -16.14850 -16.12191 -15.70480 -15.47533 -15.25620 -14.87400 -14.74484 -14.59923 -14.38518 -14.06149 -13.90185 -13.59481 -13.43785 -13.19943 -13.10629 -12.92604 -12.72436 -12.65806 -12.47686 -12.25603 -12.10826 -12.05726 -11.88674 -11.85962 -11.68665 -11.56775 -11.24992 -11.20584 -11.05964 -10.83949 -9.74659 -9.70574 -9.41946 -9.15638 -8.36537 -5.33521 0.35076 0.44729 1.56684 1.62436 1.70929 1.86897 1.93158 2.65500 2.73429 3.13280 3.37316 3.38983 3.53221 3.69290 3.75280 3.85179 3.89599 3.95745 3.98294 4.02630 4.12089 4.15910 4.20642 4.26061 4.33638 4.37277 4.40225 4.46933 4.54471 4.64088 4.69252 4.74349 4.78469 4.82938 4.93686 4.94865 5.05336 5.08260 5.11184 5.16196 5.17339 5.23815 5.26022 5.40278 5.53443 5.62882 5.63175 5.67023 6.07647 6.48845 6.52128 7.06947 7.11755 7.97689 8.08424 9.14899 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.002523 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.791911 B =11096.913344 C =11981.991507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 H 0.071 0.929 4 C -0.126 4.126 5 C 0.172 3.828 6 H 0.060 0.940 7 N -0.736 5.736 8 C -0.331 4.331 9 H 0.071 0.929 10 C -0.099 4.099 11 N -0.975 5.975 12 Si 1.124 2.876 13 H -0.279 1.279 14 H -0.297 1.297 15 H -0.276 1.276 16 C 0.088 3.912 17 N -0.610 5.610 18 C 0.529 3.471 19 O -0.570 6.570 20 C -0.096 4.096 21 C -0.070 4.070 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.130 4.130 25 C -0.058 4.058 26 C -0.137 4.137 27 C -0.170 4.170 28 C -0.161 4.161 29 C -0.118 4.118 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.364 0.636 36 H 0.246 0.754 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.095 0.905 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 8.349 21.053 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.089 0.911 4 C -0.164 4.164 5 C 0.061 3.939 6 H 0.078 0.922 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.089 0.911 10 C -0.291 4.291 11 N -0.622 5.622 12 Si 0.949 3.051 13 H -0.205 1.205 14 H -0.223 1.223 15 H -0.202 1.202 16 C -0.038 4.038 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.449 6.449 20 C -0.135 4.135 21 C -0.071 4.071 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.148 4.148 25 C -0.059 4.059 26 C -0.156 4.156 27 C -0.206 4.206 28 C -0.198 4.198 29 C -0.136 4.136 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.197 0.803 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.143 0.857 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.114 0.886 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.591 7.433 20.822 24.515 hybrid contribution -0.396 1.509 -0.109 1.563 sum -10.986 8.942 20.714 25.094 Atomic orbital electron populations 1.22050 0.94022 1.02120 1.02797 1.21518 0.95148 0.95753 0.84067 0.91084 1.22904 1.02060 0.94833 0.96618 1.21345 0.91040 0.92233 0.89243 0.92182 1.42449 1.38393 1.04334 1.52516 1.20344 1.16122 0.84775 1.24974 0.91125 1.27084 0.95112 1.10280 0.96641 1.70999 1.41737 1.06732 1.42780 0.82674 0.76020 0.70017 0.76409 1.20503 1.22324 1.20198 1.23115 0.94379 0.87759 0.98525 1.48665 1.50285 1.30517 1.04949 1.20563 0.80182 0.84764 0.82543 1.90661 1.40220 1.30355 1.83678 1.20682 1.03268 1.00157 0.89412 1.19386 0.95599 0.97480 0.94610 1.21192 1.00350 0.96757 0.96247 1.21356 0.96990 0.99989 0.95336 1.21265 0.95036 0.97452 1.01001 1.19315 0.95546 0.96485 0.94505 1.21067 0.96414 1.06592 0.91483 1.23176 1.02056 0.95674 0.99731 1.23093 1.03068 0.96850 0.96817 1.20912 0.96115 1.00801 0.95731 0.92902 0.89847 0.92774 0.90800 0.88874 0.80343 0.94360 0.90499 0.92161 0.86846 0.86792 0.85660 0.83842 0.84145 0.87184 0.87857 0.87290 0.87257 0.88618 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.06 71.98 0.65 -3.36 16 2 C 0.14 3.95 3.49 45.34 0.16 4.11 16 3 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.13 -3.73 6.12 31.78 0.19 -3.54 16 5 C 0.17 6.19 3.69 46.38 0.17 6.36 16 6 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 7 N -0.74 -33.95 5.27 -316.38 -1.67 -35.61 16 8 C -0.33 -17.25 9.98 84.03 0.84 -16.41 16 9 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 10 C -0.10 -5.48 5.50 84.86 0.47 -5.01 16 11 N -0.97 -58.49 13.70 21.65 0.30 -58.19 16 12 Si 1.12 49.54 29.92 68.60 2.05 51.59 16 13 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 14 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 15 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 16 C 0.09 2.83 6.39 86.86 0.55 3.38 16 17 N -0.61 -18.35 3.08 -788.04 -2.43 -20.78 16 18 C 0.53 16.20 7.62 87.66 0.67 16.87 16 19 O -0.57 -20.71 14.93 -3.03 -0.05 -20.76 16 20 C -0.10 -2.37 4.84 29.10 0.14 -2.23 16 21 C -0.07 -1.79 4.37 -19.87 -0.09 -1.87 16 22 C -0.13 -3.01 9.70 22.27 0.22 -2.79 16 23 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 24 C -0.13 -2.57 9.30 22.27 0.21 -2.36 16 25 C -0.06 -1.28 5.61 -19.86 -0.11 -1.39 16 26 C -0.14 -2.39 6.04 -11.54 -0.07 -2.46 16 27 C -0.17 -2.20 9.86 30.62 0.30 -1.90 16 28 C -0.16 -2.14 10.17 30.62 0.31 -1.83 16 29 C -0.12 -2.90 9.39 22.27 0.21 -2.69 16 30 H 0.05 1.57 6.74 -2.39 -0.02 1.56 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.07 2.22 8.00 -2.39 -0.02 2.20 16 34 H 0.09 2.54 7.83 -2.39 -0.02 2.52 16 35 H 0.36 17.63 6.54 -92.71 -0.61 17.03 16 36 H 0.25 14.61 6.77 -92.71 -0.63 13.98 16 37 H 0.08 2.36 7.48 -2.38 -0.02 2.34 16 38 H 0.06 2.06 8.14 -2.38 -0.02 2.05 16 39 H 0.11 2.51 7.79 -2.38 -0.02 2.49 16 40 H 0.11 2.50 8.08 -2.39 -0.02 2.48 16 41 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 42 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.14 2.08 6.02 -2.91 -0.02 2.06 16 44 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.10 1.22 6.18 -2.39 -0.01 1.20 16 46 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -67.14 396.10 3.73 -63.41 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: 0.48 Total: 39.66 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 5.05 Total: -19.32 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -3.80 Total: -114.59 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.76 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.05 Total: 51.59 kcal Total: -67.14 3.73 -63.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989228724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.613 kcal (2) G-P(sol) polarization free energy of solvation -67.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds