Wall clock time and date at job start Sat Apr 11 2020 02:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.99868 * 2 1 4 4 C 1.54320 * 109.88797 * 121.10019 * 2 1 3 5 5 C 1.55151 * 102.94532 * 141.60517 * 4 2 1 6 6 H 1.09004 * 111.00321 * 82.57835 * 5 4 2 7 7 N 1.46497 * 111.00747 * 206.38493 * 5 4 2 8 8 C 1.36931 * 120.00578 * 205.00301 * 7 5 4 9 9 H 1.07999 * 119.99660 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00367 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00046 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99720 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.46994 * 90.00428 * 12 10 8 14 14 H 1.48506 * 109.46865 * 210.00070 * 12 10 8 15 15 H 1.48493 * 109.47263 * 329.99646 * 12 10 8 16 16 C 1.55123 * 101.48742 * 324.33564 * 5 4 2 17 17 N 1.47025 * 109.88127 * 238.90819 * 2 1 3 18 18 C 1.34776 * 125.64845 * 61.60385 * 17 2 1 19 19 O 1.21556 * 120.00064 * 5.81679 * 18 17 2 20 20 C 1.47847 * 120.00117 * 185.81591 * 18 17 2 21 21 C 1.39601 * 120.26949 * 24.47044 * 20 18 17 22 22 C 1.37627 * 119.62087 * 180.36153 * 21 20 18 23 23 C 1.39076 * 120.75390 * 359.54998 * 22 21 20 24 24 C 1.37835 * 119.90171 * 0.29996 * 23 22 21 25 25 C 1.38643 * 119.82399 * 359.96070 * 24 23 22 26 26 C 1.50658 * 122.55319 * 180.18944 * 24 23 22 27 27 C 1.52722 * 110.60755 * 342.30685 * 26 24 23 28 28 C 1.53328 * 108.36667 * 51.11173 * 27 26 24 29 29 C 1.50688 * 117.60696 * 179.89976 * 23 22 21 30 30 H 1.09001 * 109.47044 * 179.64183 * 1 2 3 31 31 H 1.08998 * 109.46652 * 299.63907 * 1 2 3 32 32 H 1.08994 * 109.47001 * 59.63657 * 1 2 3 33 33 H 1.09002 * 110.72150 * 259.97554 * 4 2 1 34 34 H 1.09005 * 110.71368 * 23.24191 * 4 2 1 35 35 H 0.97009 * 119.99948 * 25.00468 * 7 5 4 36 36 H 0.96993 * 120.00153 * 180.02562 * 11 10 8 37 37 H 1.08997 * 110.50018 * 278.45046 * 16 5 4 38 38 H 1.09005 * 110.34246 * 156.05961 * 16 5 4 39 39 H 1.08000 * 120.18975 * 0.08902 * 21 20 18 40 40 H 1.08001 * 119.62159 * 179.77626 * 22 21 20 41 41 H 1.08001 * 119.78367 * 179.97438 * 25 24 23 42 42 H 1.08998 * 109.25224 * 102.59635 * 26 24 23 43 43 H 1.08997 * 109.24724 * 222.05567 * 26 24 23 44 44 H 1.09000 * 109.68782 * 170.83028 * 27 26 24 45 45 H 1.09001 * 109.68699 * 291.39766 * 27 26 24 46 46 H 1.09008 * 109.68362 * 49.76271 * 28 27 26 47 47 H 1.09003 * 109.68512 * 170.28661 * 28 27 26 48 48 H 1.09007 * 109.24746 * 42.37414 * 29 23 22 49 49 H 1.08999 * 109.22177 * 282.94322 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2426 5 6 3.2876 -1.5143 0.6922 6 1 4.1655 -0.8689 0.6602 7 7 3.5538 -2.7191 1.4819 8 6 4.8171 -3.2458 1.5228 9 1 5.6174 -2.7726 0.9733 10 6 5.0692 -4.3878 2.2707 11 7 6.2836 -4.8936 2.3105 12 14 3.6847 -5.2065 3.2207 13 1 3.0234 -6.2183 2.3581 14 1 4.2382 -5.8710 4.4279 15 1 2.6922 -4.1811 3.6313 16 6 2.8099 -1.8825 -0.7370 17 7 2.0300 -0.7140 -1.1840 18 6 1.8073 -0.3619 -2.4658 19 8 1.2328 0.6789 -2.7191 20 6 2.2618 -1.2416 -3.5637 21 6 2.4441 -2.6076 -3.3413 22 6 2.8748 -3.4129 -4.3709 23 6 3.1216 -2.8829 -5.6328 24 6 2.9405 -1.5355 -5.8596 25 6 2.5120 -0.7141 -4.8281 26 6 3.1859 -0.8993 -7.2030 27 6 4.0408 -1.8105 -8.0812 28 6 3.4070 -3.2067 -8.0898 29 6 3.5930 -3.8284 -6.7073 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3632 0.5082 0.8932 32 1 -0.3633 0.5194 -0.8867 33 1 2.3530 -0.0461 2.0200 34 1 1.3051 -1.4460 1.6181 35 1 2.8350 -3.1440 1.9758 36 1 6.4597 -5.6918 2.8327 37 1 2.1801 -2.7717 -0.7117 38 1 3.6655 -2.0412 -1.3934 39 1 2.2525 -3.0294 -2.3657 40 1 3.0194 -4.4692 -4.1979 41 1 2.3708 0.3417 -5.0064 42 1 2.2302 -0.7193 -7.6954 43 1 3.7020 0.0503 -7.0620 44 1 4.0740 -1.4161 -9.0968 45 1 5.0511 -1.8685 -7.6760 46 1 2.3437 -3.1258 -8.3158 47 1 3.8959 -3.8272 -8.8408 48 1 3.0193 -4.7534 -6.6491 49 1 4.6489 -4.0502 -6.5522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989756621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:12:46 Heat of formation + Delta-G solvation = -4.822325 kcal Electronic energy + Delta-G solvation = -28207.571980 eV Core-core repulsion = 24519.935670 eV Total energy + Delta-G solvation = -3687.636310 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.62312 -39.51578 -37.49517 -36.01531 -34.39046 -32.68554 -32.14070 -31.58885 -29.99394 -29.07558 -28.88594 -25.69807 -24.63402 -23.71835 -23.04965 -22.42080 -21.50078 -20.49640 -19.84492 -18.82795 -17.77873 -16.93786 -16.30328 -16.03296 -15.75850 -15.22084 -14.65874 -14.53062 -14.26583 -14.12058 -14.06003 -13.82029 -13.58095 -13.32807 -13.13293 -13.00210 -12.72838 -12.67025 -12.49573 -12.34612 -12.18758 -11.86314 -11.57521 -11.48424 -11.42648 -11.16406 -11.13804 -10.84526 -10.72647 -10.70422 -10.52666 -10.40831 -10.12321 -9.74277 -9.68831 -9.09009 -8.81982 -8.61879 -8.40023 -7.44057 -5.88610 -3.27073 0.91941 1.35089 2.90724 3.11529 3.29278 3.31768 3.38400 3.81845 4.39918 4.45647 4.48069 4.59336 4.65640 4.84381 4.89092 4.90973 5.02267 5.06350 5.10344 5.23018 5.30748 5.31770 5.34122 5.37859 5.46086 5.50998 5.58682 5.63763 5.65324 5.67056 5.73103 5.77004 5.80777 5.89326 5.92113 5.94857 6.00834 6.06126 6.06923 6.19355 6.29520 6.33474 6.36539 6.38514 6.53849 6.61020 6.66932 6.90753 7.71318 7.85614 8.29477 8.31864 9.06180 9.78128 9.96089 11.28938 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.003558 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.024328 B = 7868.345309 C = 9749.800501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.141 4.141 5 C 0.177 3.823 6 H 0.078 0.922 7 N -0.735 5.735 8 C -0.254 4.254 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.070 3.930 17 N -0.605 5.605 18 C 0.574 3.426 19 O -0.549 6.549 20 C -0.130 4.130 21 C -0.092 4.092 22 C -0.127 4.127 23 C -0.055 4.055 24 C -0.091 4.091 25 C -0.063 4.063 26 C -0.078 4.078 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.084 4.084 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 5.542 -17.159 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.093 0.907 4 C -0.180 4.180 5 C 0.065 3.935 6 H 0.096 0.904 7 N -0.376 5.376 8 C -0.384 4.384 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.055 4.055 17 N -0.338 5.338 18 C 0.364 3.636 19 O -0.428 6.428 20 C -0.133 4.133 21 C -0.111 4.111 22 C -0.145 4.145 23 C -0.055 4.055 24 C -0.091 4.091 25 C -0.082 4.082 26 C -0.115 4.115 27 C -0.158 4.158 28 C -0.157 4.157 29 C -0.121 4.121 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.160 0.840 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.810 6.046 -17.342 20.370 hybrid contribution -0.892 -0.859 0.875 1.517 sum -9.702 5.187 -16.467 19.804 Atomic orbital electron populations 1.22125 0.95102 1.02131 1.02489 1.21512 0.94176 0.96389 0.84401 0.90659 1.23092 0.99003 0.99816 0.96097 1.21336 0.95161 0.88772 0.88240 0.90432 1.42660 1.09209 1.29331 1.56394 1.19079 0.85842 1.07415 1.26062 0.88969 1.24678 0.96100 0.97973 0.99821 1.69694 1.18976 1.23959 1.44830 0.86587 0.82290 0.79680 0.80177 1.20949 1.21605 1.20198 1.23716 0.94714 0.87371 0.99745 1.48470 1.52003 1.28853 1.04446 1.17977 0.79108 0.85091 0.81453 1.90722 1.43682 1.24842 1.83575 1.19765 1.05120 0.94118 0.94284 1.21851 0.96258 0.92731 1.00220 1.21153 1.00727 1.00290 0.92317 1.19822 0.97494 0.93369 0.94832 1.19510 1.01146 0.92818 0.95612 1.21174 0.96011 1.00104 0.90945 1.20449 1.00477 0.98522 0.92090 1.21555 0.99418 0.95257 0.99548 1.21550 1.01293 0.96428 0.96452 1.20541 1.01780 0.97181 0.92610 0.92586 0.91735 0.91683 0.89960 0.90613 0.80222 0.92864 0.91210 0.90237 0.84009 0.85476 0.85286 0.90682 0.90702 0.91460 0.91459 0.91636 0.91425 0.90538 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.11 37.16 0.34 -1.75 16 2 C 0.14 1.98 3.43 -66.95 -0.23 1.75 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.14 -2.04 6.12 -24.90 -0.15 -2.20 16 5 C 0.18 3.12 3.73 -65.67 -0.24 2.88 16 6 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 7 N -0.73 -15.88 5.05 -51.24 -0.26 -16.14 16 8 C -0.25 -6.70 10.44 -15.06 -0.16 -6.85 16 9 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 10 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 11 N -0.93 -27.91 13.97 55.49 0.78 -27.13 16 12 Si 0.88 20.88 27.74 -169.99 -4.71 16.16 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.09 6.52 56.52 0.37 -5.73 16 16 C 0.07 1.13 4.69 -2.41 -0.01 1.12 16 17 N -0.60 -9.46 3.06 -163.98 -0.50 -9.97 16 18 C 0.57 9.56 7.40 -12.33 -0.09 9.47 16 19 O -0.55 -10.32 15.86 5.32 0.08 -10.23 16 20 C -0.13 -1.95 5.66 -105.08 -0.59 -2.55 16 21 C -0.09 -1.29 8.08 -39.30 -0.32 -1.61 16 22 C -0.13 -1.58 9.59 -39.49 -0.38 -1.96 16 23 C -0.05 -0.63 5.75 -104.46 -0.60 -1.23 16 24 C -0.09 -1.07 5.73 -104.64 -0.60 -1.67 16 25 C -0.06 -0.86 9.15 -39.05 -0.36 -1.22 16 26 C -0.08 -0.70 5.66 -28.05 -0.16 -0.86 16 27 C -0.12 -0.92 5.98 -26.70 -0.16 -1.08 16 28 C -0.12 -0.90 5.98 -26.71 -0.16 -1.05 16 29 C -0.08 -0.74 5.66 -28.03 -0.16 -0.90 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.94 7.08 -51.93 -0.37 0.58 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.07 7.71 -51.93 -0.40 0.67 16 35 H 0.36 7.72 5.63 -40.82 -0.23 7.50 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 1.12 6.85 -51.93 -0.36 0.76 16 38 H 0.08 1.34 6.81 -51.93 -0.35 0.99 16 39 H 0.14 1.99 4.62 -52.49 -0.24 1.75 16 40 H 0.13 1.38 8.05 -52.49 -0.42 0.96 16 41 H 0.13 1.71 7.82 -52.49 -0.41 1.30 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 44 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 46 H 0.06 0.50 8.10 -51.92 -0.42 0.07 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.61 8.13 -51.92 -0.42 0.18 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -30.98 380.67 -10.87 -41.85 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.86 Total: 9.23 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -4.13 Total: -9.51 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.01 Total: -53.24 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.71 Total: 16.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.98 -10.87 -41.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989756621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.023 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds