Wall clock time and date at job start Sat Apr 11 2020 02:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.99868 * 2 1 4 4 C 1.54320 * 109.88797 * 121.10019 * 2 1 3 5 5 C 1.55151 * 102.94532 * 141.60517 * 4 2 1 6 6 H 1.09004 * 111.00321 * 82.57835 * 5 4 2 7 7 N 1.46497 * 111.00747 * 206.38493 * 5 4 2 8 8 C 1.36931 * 120.00578 * 205.00301 * 7 5 4 9 9 H 1.07999 * 119.99660 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00367 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00046 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99720 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.46994 * 90.00428 * 12 10 8 14 14 H 1.48506 * 109.46865 * 210.00070 * 12 10 8 15 15 H 1.48493 * 109.47263 * 329.99646 * 12 10 8 16 16 C 1.55123 * 101.48742 * 324.33564 * 5 4 2 17 17 N 1.47025 * 109.88127 * 238.90819 * 2 1 3 18 18 C 1.34776 * 125.64845 * 61.60385 * 17 2 1 19 19 O 1.21556 * 120.00064 * 5.81679 * 18 17 2 20 20 C 1.47847 * 120.00117 * 185.81591 * 18 17 2 21 21 C 1.39601 * 120.26949 * 24.47044 * 20 18 17 22 22 C 1.37627 * 119.62087 * 180.36153 * 21 20 18 23 23 C 1.39076 * 120.75390 * 359.54998 * 22 21 20 24 24 C 1.37835 * 119.90171 * 0.29996 * 23 22 21 25 25 C 1.38643 * 119.82399 * 359.96070 * 24 23 22 26 26 C 1.50658 * 122.55319 * 180.18944 * 24 23 22 27 27 C 1.52722 * 110.60755 * 342.30685 * 26 24 23 28 28 C 1.53328 * 108.36667 * 51.11173 * 27 26 24 29 29 C 1.50688 * 117.60696 * 179.89976 * 23 22 21 30 30 H 1.09001 * 109.47044 * 179.64183 * 1 2 3 31 31 H 1.08998 * 109.46652 * 299.63907 * 1 2 3 32 32 H 1.08994 * 109.47001 * 59.63657 * 1 2 3 33 33 H 1.09002 * 110.72150 * 259.97554 * 4 2 1 34 34 H 1.09005 * 110.71368 * 23.24191 * 4 2 1 35 35 H 0.97009 * 119.99948 * 25.00468 * 7 5 4 36 36 H 0.96993 * 120.00153 * 180.02562 * 11 10 8 37 37 H 1.08997 * 110.50018 * 278.45046 * 16 5 4 38 38 H 1.09005 * 110.34246 * 156.05961 * 16 5 4 39 39 H 1.08000 * 120.18975 * 0.08902 * 21 20 18 40 40 H 1.08001 * 119.62159 * 179.77626 * 22 21 20 41 41 H 1.08001 * 119.78367 * 179.97438 * 25 24 23 42 42 H 1.08998 * 109.25224 * 102.59635 * 26 24 23 43 43 H 1.08997 * 109.24724 * 222.05567 * 26 24 23 44 44 H 1.09000 * 109.68782 * 170.83028 * 27 26 24 45 45 H 1.09001 * 109.68699 * 291.39766 * 27 26 24 46 46 H 1.09008 * 109.68362 * 49.76271 * 28 27 26 47 47 H 1.09003 * 109.68512 * 170.28661 * 28 27 26 48 48 H 1.09007 * 109.24746 * 42.37414 * 29 23 22 49 49 H 1.08999 * 109.22177 * 282.94322 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2426 5 6 3.2876 -1.5143 0.6922 6 1 4.1655 -0.8689 0.6602 7 7 3.5538 -2.7191 1.4819 8 6 4.8171 -3.2458 1.5228 9 1 5.6174 -2.7726 0.9733 10 6 5.0692 -4.3878 2.2707 11 7 6.2836 -4.8936 2.3105 12 14 3.6847 -5.2065 3.2207 13 1 3.0234 -6.2183 2.3581 14 1 4.2382 -5.8710 4.4279 15 1 2.6922 -4.1811 3.6313 16 6 2.8099 -1.8825 -0.7370 17 7 2.0300 -0.7140 -1.1840 18 6 1.8073 -0.3619 -2.4658 19 8 1.2328 0.6789 -2.7191 20 6 2.2618 -1.2416 -3.5637 21 6 2.4441 -2.6076 -3.3413 22 6 2.8748 -3.4129 -4.3709 23 6 3.1216 -2.8829 -5.6328 24 6 2.9405 -1.5355 -5.8596 25 6 2.5120 -0.7141 -4.8281 26 6 3.1859 -0.8993 -7.2030 27 6 4.0408 -1.8105 -8.0812 28 6 3.4070 -3.2067 -8.0898 29 6 3.5930 -3.8284 -6.7073 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3632 0.5082 0.8932 32 1 -0.3633 0.5194 -0.8867 33 1 2.3530 -0.0461 2.0200 34 1 1.3051 -1.4460 1.6181 35 1 2.8350 -3.1440 1.9758 36 1 6.4597 -5.6918 2.8327 37 1 2.1801 -2.7717 -0.7117 38 1 3.6655 -2.0412 -1.3934 39 1 2.2525 -3.0294 -2.3657 40 1 3.0194 -4.4692 -4.1979 41 1 2.3708 0.3417 -5.0064 42 1 2.2302 -0.7193 -7.6954 43 1 3.7020 0.0503 -7.0620 44 1 4.0740 -1.4161 -9.0968 45 1 5.0511 -1.8685 -7.6760 46 1 2.3437 -3.1258 -8.3158 47 1 3.8959 -3.8272 -8.8408 48 1 3.0193 -4.7534 -6.6491 49 1 4.6489 -4.0502 -6.5522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989756621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:12:45 Heat of formation + Delta-G solvation = -21.245540 kcal Electronic energy + Delta-G solvation = -28208.284144 eV Core-core repulsion = 24519.935670 eV Total energy + Delta-G solvation = -3688.348474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.77417 -40.56421 -38.84176 -36.89440 -36.13549 -33.59138 -33.54048 -33.19438 -30.97323 -30.54979 -29.86700 -26.91492 -25.87277 -25.16364 -24.06104 -23.34457 -22.67216 -21.95639 -20.79859 -20.01762 -19.62999 -18.11608 -17.60820 -17.09527 -16.82563 -16.50032 -16.06705 -15.61617 -15.55949 -15.31729 -14.98634 -14.93429 -14.75003 -14.67335 -14.40040 -14.22721 -13.90433 -13.80004 -13.64003 -13.45166 -13.23171 -13.05050 -12.96950 -12.85981 -12.47246 -12.46756 -12.18955 -12.16622 -11.91163 -11.84141 -11.74533 -11.56298 -11.43074 -11.31197 -11.08768 -10.87547 -9.91185 -9.70997 -9.57136 -9.32867 -8.01115 -5.37440 -0.14943 0.33977 1.42043 1.44673 1.52024 1.69814 1.87769 2.50206 2.74682 3.22533 3.27853 3.59874 3.65235 3.71987 3.80351 3.83423 3.92350 4.05335 4.06115 4.15280 4.16226 4.21393 4.32075 4.39210 4.42187 4.49655 4.62586 4.65095 4.67182 4.69833 4.78915 4.85766 4.90229 4.98122 5.01413 5.02273 5.05714 5.09255 5.13303 5.18658 5.26245 5.29743 5.32432 5.40634 5.46040 5.48011 5.62053 5.77471 5.94050 6.21579 6.40985 7.01710 7.07347 7.79347 8.00073 9.19739 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.003558 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.024328 B = 7868.345309 C = 9749.800501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.168 3.832 6 H 0.063 0.937 7 N -0.734 5.734 8 C -0.235 4.235 9 H 0.058 0.942 10 C -0.057 4.057 11 N -0.981 5.981 12 Si 0.952 3.048 13 H -0.277 1.277 14 H -0.300 1.300 15 H -0.246 1.246 16 C 0.085 3.915 17 N -0.604 5.604 18 C 0.571 3.429 19 O -0.576 6.576 20 C -0.153 4.153 21 C -0.103 4.103 22 C -0.134 4.134 23 C -0.054 4.054 24 C -0.092 4.092 25 C -0.074 4.074 26 C -0.080 4.080 27 C -0.119 4.119 28 C -0.118 4.118 29 C -0.086 4.086 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.371 0.629 36 H 0.258 0.742 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 5.230 -18.058 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 H 0.093 0.907 4 C -0.164 4.164 5 C 0.058 3.942 6 H 0.081 0.919 7 N -0.376 5.376 8 C -0.366 4.366 9 H 0.076 0.924 10 C -0.249 4.249 11 N -0.631 5.631 12 Si 0.779 3.221 13 H -0.203 1.203 14 H -0.227 1.227 15 H -0.170 1.170 16 C -0.041 4.041 17 N -0.336 5.336 18 C 0.362 3.638 19 O -0.458 6.458 20 C -0.156 4.156 21 C -0.121 4.121 22 C -0.152 4.152 23 C -0.054 4.054 24 C -0.092 4.092 25 C -0.093 4.093 26 C -0.116 4.116 27 C -0.156 4.156 28 C -0.155 4.155 29 C -0.122 4.122 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.205 0.795 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.104 0.896 48 H 0.107 0.893 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.663 5.780 -18.256 21.918 hybrid contribution -0.264 -0.679 1.037 1.267 sum -10.927 5.101 -17.219 21.022 Atomic orbital electron populations 1.22053 0.93686 1.02362 1.02876 1.21658 0.95283 0.96192 0.83697 0.90725 1.23011 0.97282 0.99795 0.96341 1.21454 0.96339 0.87578 0.88866 0.91892 1.42529 1.07554 1.30384 1.57172 1.18990 0.86869 1.06646 1.24118 0.92428 1.25471 0.98631 0.99084 1.01683 1.69879 1.21687 1.24828 1.46676 0.85469 0.79536 0.79055 0.78077 1.20344 1.22734 1.17039 1.23413 0.94531 0.87813 0.98329 1.48482 1.51698 1.28631 1.04757 1.18273 0.78636 0.84937 0.81952 1.90693 1.45053 1.26053 1.83952 1.19777 1.06930 0.94437 0.94438 1.21835 0.97123 0.92544 1.00592 1.21418 1.00326 1.00982 0.92458 1.20211 0.96128 0.93784 0.95256 1.19862 0.99966 0.92950 0.96407 1.21301 0.96533 1.00363 0.91113 1.20537 1.01422 0.98847 0.90841 1.21572 0.98699 0.95160 1.00164 1.21566 1.01589 0.96441 0.95896 1.20642 1.02082 0.97002 0.92499 0.92358 0.89204 0.93435 0.88351 0.89311 0.79478 0.93306 0.90550 0.91432 0.84510 0.83947 0.85574 0.89682 0.90344 0.89539 0.91959 0.91548 0.89569 0.89349 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.11 71.98 0.66 -3.02 16 2 C 0.13 3.67 3.43 45.34 0.16 3.83 16 3 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.13 -3.35 6.12 31.78 0.19 -3.16 16 5 C 0.17 5.82 3.73 46.46 0.17 6.00 16 6 H 0.06 2.37 8.09 -2.38 -0.02 2.35 16 7 N -0.73 -30.96 5.05 -316.04 -1.59 -32.56 16 8 C -0.24 -12.54 10.44 84.04 0.88 -11.66 16 9 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 10 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 11 N -0.98 -60.56 13.97 21.65 0.30 -60.26 16 12 Si 0.95 42.62 27.74 68.60 1.90 44.52 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 15 H -0.25 -9.70 6.52 99.48 0.65 -9.05 16 16 C 0.08 2.73 4.69 86.93 0.41 3.14 16 17 N -0.60 -18.79 3.06 -791.00 -2.42 -21.22 16 18 C 0.57 19.35 7.40 86.79 0.64 19.99 16 19 O -0.58 -22.06 15.86 -3.89 -0.06 -22.13 16 20 C -0.15 -4.69 5.66 -20.16 -0.11 -4.81 16 21 C -0.10 -2.90 8.08 22.45 0.18 -2.72 16 22 C -0.13 -3.26 9.59 22.33 0.21 -3.05 16 23 C -0.05 -1.17 5.75 -19.76 -0.11 -1.28 16 24 C -0.09 -2.09 5.73 -19.88 -0.11 -2.20 16 25 C -0.07 -2.05 9.15 22.61 0.21 -1.84 16 26 C -0.08 -1.30 5.66 29.74 0.17 -1.14 16 27 C -0.12 -1.52 5.98 30.61 0.18 -1.33 16 28 C -0.12 -1.43 5.98 30.61 0.18 -1.24 16 29 C -0.09 -1.32 5.66 29.75 0.17 -1.15 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.33 7.08 -2.39 -0.02 1.32 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.09 2.19 7.71 -2.38 -0.02 2.18 16 35 H 0.37 14.77 5.63 -92.70 -0.52 14.25 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.08 2.39 6.85 -2.39 -0.02 2.37 16 38 H 0.07 2.34 6.81 -2.38 -0.02 2.32 16 39 H 0.14 3.88 4.62 -2.91 -0.01 3.87 16 40 H 0.14 2.94 8.05 -2.91 -0.02 2.92 16 41 H 0.13 3.45 7.82 -2.91 -0.02 3.43 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 44 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 46 H 0.07 0.82 8.10 -2.38 -0.02 0.80 16 47 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.09 1.17 8.13 -2.38 -0.02 1.15 16 49 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -68.38 380.67 3.03 -65.36 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.37 Total: 34.62 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 4.54 Total: -8.35 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -3.72 Total: -114.03 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.06 Total: -22.13 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.90 Total: 44.52 kcal Total: -68.38 3.03 -65.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989756621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.111 kcal (2) G-P(sol) polarization free energy of solvation -68.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds