Wall clock time and date at job start Sat Apr 11 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.00297 * 2 1 4 4 C 1.54330 * 109.87887 * 121.09629 * 2 1 3 5 5 C 1.55155 * 102.94292 * 97.22462 * 4 2 1 6 6 H 1.09001 * 111.00015 * 277.42463 * 5 4 2 7 7 N 1.46494 * 111.03951 * 153.59038 * 5 4 2 8 8 C 1.36940 * 120.00110 * 161.32855 * 7 5 4 9 9 H 1.07995 * 120.00057 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99512 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00613 * 359.97438 * 10 8 7 12 12 Si 1.86812 * 119.99528 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46881 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.46966 * 120.00054 * 12 10 8 15 15 H 1.48497 * 109.46994 * 239.99859 * 12 10 8 16 16 C 1.54907 * 101.58383 * 35.49718 * 5 4 2 17 17 N 1.47026 * 109.88306 * 238.89944 * 2 1 3 18 18 C 1.34775 * 125.64519 * 59.49058 * 17 2 1 19 19 O 1.21288 * 120.00108 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99876 * 180.02562 * 18 17 2 21 21 C 1.50709 * 109.47004 * 180.02562 * 20 18 17 22 22 C 1.38253 * 120.03163 * 269.72873 * 21 20 18 23 23 C 1.38096 * 119.93327 * 179.70878 * 22 21 20 24 24 C 1.38507 * 120.21434 * 0.55344 * 23 22 21 25 25 C 1.38218 * 119.84999 * 359.72472 * 24 23 22 26 26 C 1.38095 * 120.02887 * 90.00039 * 21 20 18 27 27 C 1.51361 * 109.75675 * 179.97438 * 25 24 23 28 28 C 1.54340 * 105.17202 * 342.81201 * 27 25 24 29 29 C 1.51359 * 130.38934 * 179.69731 * 24 23 22 30 30 H 1.08992 * 109.47824 * 179.64232 * 1 2 3 31 31 H 1.09003 * 109.47081 * 299.64934 * 1 2 3 32 32 H 1.09003 * 109.46640 * 59.63966 * 1 2 3 33 33 H 1.08998 * 110.71700 * 215.58388 * 4 2 1 34 34 H 1.08991 * 110.72004 * 338.85679 * 4 2 1 35 35 H 0.97001 * 119.99882 * 341.32548 * 7 5 4 36 36 H 0.97003 * 120.00061 * 180.02562 * 11 10 8 37 37 H 1.08997 * 110.36783 * 204.15179 * 16 5 4 38 38 H 1.08997 * 110.45914 * 81.87830 * 16 5 4 39 39 H 1.08994 * 109.47206 * 300.00066 * 20 18 17 40 40 H 1.09001 * 109.47013 * 60.00447 * 20 18 17 41 41 H 1.07995 * 120.03326 * 359.97438 * 22 21 20 42 42 H 1.08001 * 119.89660 * 180.27480 * 23 22 21 43 43 H 1.08004 * 119.89713 * 0.02562 * 26 21 20 44 44 H 1.08996 * 110.30601 * 101.73974 * 27 25 24 45 45 H 1.09004 * 110.30258 * 223.88668 * 27 25 24 46 46 H 1.09005 * 110.82694 * 268.12185 * 28 27 25 47 47 H 1.09001 * 110.99554 * 144.65308 * 28 27 25 48 48 H 1.09000 * 110.30596 * 316.14151 * 29 24 23 49 49 H 1.08999 * 110.30760 * 78.19616 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7496 1.2428 5 6 2.3517 -2.1695 0.6925 6 1 1.4450 -2.7736 0.6605 7 7 3.3932 -2.8321 1.4814 8 6 3.5374 -4.1925 1.4199 9 1 2.8831 -4.7770 0.7901 10 6 4.5246 -4.8202 2.1671 11 7 5.3223 -4.1079 2.9343 12 14 4.7209 -6.6761 2.0838 13 1 3.7077 -7.2398 1.1559 14 1 6.0822 -7.0083 1.5922 15 1 4.5284 -7.2555 3.4375 16 6 2.8567 -1.8499 -0.7367 17 7 2.0300 -0.7142 -1.1839 18 6 1.7742 -0.3854 -2.4656 19 8 1.0770 0.5744 -2.7180 20 6 2.3546 -1.2104 -3.5853 21 6 1.9213 -0.6357 -4.9094 22 6 0.7550 -1.0767 -5.5067 23 6 0.3568 -0.5444 -6.7171 24 6 1.1280 0.4222 -7.3410 25 6 2.2970 0.8589 -6.7467 26 6 2.6918 0.3277 -5.5300 27 6 2.9533 1.9080 -7.6184 28 6 2.2956 1.7495 -9.0056 29 6 0.9187 1.1480 -8.6527 30 1 -0.3634 -1.0275 -0.0064 31 1 -0.3633 0.5084 0.8931 32 1 -0.3633 0.5194 -0.8868 33 1 2.9656 -0.2833 1.6183 34 1 1.2917 -0.7890 2.0201 35 1 3.9806 -2.3072 2.0474 36 1 6.0124 -4.5466 3.4562 37 1 2.7086 -2.7082 -1.3921 38 1 3.9092 -1.5675 -0.7146 39 1 3.4426 -1.1952 -3.5216 40 1 2.0000 -2.2377 -3.5012 41 1 0.1538 -1.8335 -5.0251 42 1 -0.5567 -0.8861 -7.1810 43 1 3.6053 0.6683 -5.0651 44 1 2.7614 2.9044 -7.2204 45 1 4.0261 1.7269 -7.6854 46 1 2.8690 1.0646 -9.6304 47 1 2.1819 2.7160 -9.4966 48 1 0.6023 0.4481 -9.4260 49 1 0.1782 1.9389 -8.5334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989785251.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:12:56 Heat of formation + Delta-G solvation = -23.571604 kcal Electronic energy + Delta-G solvation = -27485.127038 eV Core-core repulsion = 23796.677698 eV Total energy + Delta-G solvation = -3688.449340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49397 -40.78680 -38.84259 -36.83992 -35.94432 -33.57229 -33.15602 -32.51596 -31.24668 -29.96462 -28.73458 -27.30132 -26.72084 -25.77014 -23.71300 -23.15339 -21.77440 -21.66848 -20.99521 -19.87360 -19.24919 -18.12804 -17.26159 -16.96656 -16.79537 -16.48670 -16.28172 -15.96315 -15.65542 -15.51350 -15.07802 -14.72205 -14.50628 -14.31236 -14.14914 -13.99652 -13.81426 -13.71149 -13.36551 -13.28757 -13.14071 -13.00775 -12.82751 -12.80512 -12.52769 -12.26737 -12.15001 -12.10882 -12.02548 -11.99992 -11.71959 -11.69696 -11.61775 -11.44953 -11.05329 -10.79952 -9.68258 -9.66470 -9.29832 -9.04206 -7.93857 -5.23690 0.36805 0.48002 1.50664 1.51940 1.60873 1.62116 1.99560 2.57535 2.80090 3.38359 3.44698 3.47393 3.67030 3.77253 3.84623 3.96536 4.00392 4.07809 4.12647 4.13822 4.18305 4.30034 4.35707 4.46983 4.49635 4.52574 4.55841 4.58273 4.72001 4.73305 4.79178 4.81814 4.91548 4.92327 4.94718 5.02726 5.07963 5.14326 5.21533 5.25457 5.28888 5.34556 5.34780 5.46700 5.50637 5.56813 5.65058 5.71087 6.10529 6.27378 6.55775 7.16546 7.35224 8.06555 8.30510 9.29215 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.002463 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.915504 B =11363.605228 C =12240.978831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 H 0.069 0.931 4 C -0.125 4.125 5 C 0.167 3.833 6 H 0.063 0.937 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.081 0.919 10 C -0.071 4.071 11 N -0.967 5.967 12 Si 0.968 3.032 13 H -0.264 1.264 14 H -0.296 1.296 15 H -0.297 1.297 16 C 0.086 3.914 17 N -0.610 5.610 18 C 0.529 3.471 19 O -0.572 6.572 20 C -0.094 4.094 21 C -0.075 4.075 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.084 4.084 28 C -0.114 4.114 29 C -0.081 4.081 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.118 0.882 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 10.561 -21.141 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.087 0.913 4 C -0.163 4.163 5 C 0.057 3.943 6 H 0.081 0.919 7 N -0.363 5.363 8 C -0.371 4.371 9 H 0.099 0.901 10 C -0.263 4.263 11 N -0.617 5.617 12 Si 0.798 3.202 13 H -0.188 1.188 14 H -0.223 1.223 15 H -0.225 1.225 16 C -0.040 4.040 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.452 6.452 20 C -0.133 4.133 21 C -0.075 4.075 22 C -0.138 4.138 23 C -0.134 4.134 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.130 4.130 27 C -0.121 4.121 28 C -0.151 4.151 29 C -0.118 4.118 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.209 0.791 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.136 0.864 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.938 10.893 -21.386 25.611 hybrid contribution 0.717 -0.923 0.864 1.453 sum -8.221 9.970 -20.522 24.252 Atomic orbital electron populations 1.22047 0.94063 1.02185 1.02668 1.21524 0.95104 0.95702 0.84205 0.91340 1.22891 1.02034 0.94977 0.96435 1.21415 0.91351 0.92327 0.89209 0.91864 1.42457 1.37837 1.04189 1.51836 1.19643 1.12169 0.84472 1.20769 0.90137 1.25509 0.98908 1.01885 1.00038 1.69808 1.23020 1.35731 1.33168 0.85157 0.77306 0.80798 0.76981 1.18827 1.22298 1.22465 1.23174 0.94436 0.87713 0.98670 1.48675 1.50234 1.30577 1.04869 1.20566 0.80189 0.84749 0.82607 1.90659 1.40377 1.30429 1.83736 1.20657 1.03175 1.00269 0.89213 1.19290 0.95881 0.97542 0.94791 1.21080 0.95969 1.00849 0.95859 1.20833 1.00236 0.96963 0.95359 1.20993 0.95241 0.96897 0.98217 1.20899 0.97023 0.98341 0.95087 1.20613 1.00368 0.96873 0.95134 1.21125 1.00243 0.96605 0.94117 1.22312 0.94830 1.02331 0.95665 1.21114 0.98826 0.99075 0.92751 0.92597 0.89930 0.93061 0.90862 0.88852 0.79050 0.94049 0.90324 0.92093 0.86990 0.86492 0.85256 0.84461 0.86389 0.90119 0.90086 0.90364 0.88703 0.89527 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.06 71.98 0.65 -3.34 16 2 C 0.14 3.95 3.50 45.34 0.16 4.11 16 3 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.12 -3.71 6.12 31.78 0.19 -3.51 16 5 C 0.17 5.93 3.68 46.38 0.17 6.10 16 6 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 7 N -0.72 -33.20 5.28 -316.39 -1.67 -34.87 16 8 C -0.24 -12.20 9.98 84.03 0.84 -11.37 16 9 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 10 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 11 N -0.97 -56.43 13.06 21.65 0.28 -56.15 16 12 Si 0.97 43.90 29.55 68.60 2.03 45.92 16 13 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 15 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 16 C 0.09 2.72 6.39 86.86 0.55 3.27 16 17 N -0.61 -18.30 3.08 -788.06 -2.43 -20.73 16 18 C 0.53 16.26 7.62 87.66 0.67 16.92 16 19 O -0.57 -21.02 14.93 -3.05 -0.05 -21.06 16 20 C -0.09 -2.33 4.84 29.11 0.14 -2.19 16 21 C -0.07 -1.94 4.37 -19.89 -0.09 -2.03 16 22 C -0.12 -2.92 9.70 22.24 0.22 -2.70 16 23 C -0.12 -2.55 10.04 22.30 0.22 -2.33 16 24 C -0.11 -2.42 6.14 -19.60 -0.12 -2.54 16 25 C -0.11 -2.59 6.14 -19.60 -0.12 -2.71 16 26 C -0.11 -2.86 9.69 22.30 0.22 -2.64 16 27 C -0.08 -1.37 6.77 30.51 0.21 -1.17 16 28 C -0.11 -1.37 7.08 31.51 0.22 -1.15 16 29 C -0.08 -1.16 6.77 30.51 0.21 -0.96 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.53 6.74 -2.39 -0.02 1.51 16 33 H 0.07 2.24 8.00 -2.39 -0.02 2.22 16 34 H 0.09 2.53 7.83 -2.39 -0.02 2.51 16 35 H 0.38 18.76 7.71 -92.71 -0.72 18.04 16 36 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 37 H 0.08 2.34 7.48 -2.39 -0.02 2.32 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.11 2.51 8.08 -2.39 -0.02 2.49 16 40 H 0.12 2.52 7.79 -2.39 -0.02 2.50 16 41 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 42 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -65.44 394.10 3.20 -62.25 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: 0.22 Total: 36.25 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 4.81 Total: -11.60 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.81 Total: -111.75 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -65.44 3.20 -62.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989785251.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.677 kcal (2) G-P(sol) polarization free energy of solvation -65.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds