Wall clock time and date at job start Sat Apr 11 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.87751 * 2 1 4 4 C 1.54328 * 109.88328 * 121.17893 * 2 1 3 5 5 C 1.55156 * 102.94212 * 141.60679 * 4 2 1 6 6 H 1.08997 * 111.03697 * 82.58759 * 5 4 2 7 7 N 1.46506 * 111.00205 * 206.42686 * 5 4 2 8 8 C 1.36933 * 119.99608 * 198.65253 * 7 5 4 9 9 H 1.08001 * 120.00348 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99899 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00263 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99935 * 359.97438 * 10 8 7 13 13 H 1.48508 * 109.47167 * 90.00003 * 12 10 8 14 14 H 1.48503 * 109.47195 * 209.99753 * 12 10 8 15 15 H 1.48501 * 109.47215 * 330.00081 * 12 10 8 16 16 C 1.54907 * 101.58095 * 324.49955 * 5 4 2 17 17 N 1.47026 * 109.88062 * 238.98514 * 2 1 3 18 18 C 1.34778 * 125.64766 * 61.61175 * 17 2 1 19 19 O 1.21281 * 119.99780 * 0.02562 * 18 17 2 20 20 C 1.50692 * 119.99839 * 180.02562 * 18 17 2 21 21 C 1.50703 * 109.46930 * 179.97438 * 20 18 17 22 22 C 1.38254 * 120.03039 * 269.71988 * 21 20 18 23 23 C 1.38105 * 119.93422 * 179.72017 * 22 21 20 24 24 C 1.38502 * 120.21246 * 0.58461 * 23 22 21 25 25 C 1.38214 * 119.84748 * 359.69702 * 24 23 22 26 26 C 1.38099 * 120.03331 * 90.00420 * 21 20 18 27 27 C 1.51372 * 109.75760 * 179.97438 * 25 24 23 28 28 C 1.54349 * 105.17110 * 17.18560 * 27 25 24 29 29 C 1.51365 * 130.39319 * 179.67300 * 24 23 22 30 30 H 1.08998 * 109.47901 * 179.56178 * 1 2 3 31 31 H 1.09009 * 109.47058 * 299.56358 * 1 2 3 32 32 H 1.09005 * 109.47002 * 59.55584 * 1 2 3 33 33 H 1.09006 * 110.71603 * 23.24224 * 4 2 1 34 34 H 1.09000 * 110.72237 * 259.97626 * 4 2 1 35 35 H 0.96992 * 120.00060 * 18.64806 * 7 5 4 36 36 H 0.97000 * 120.00352 * 180.02562 * 11 10 8 37 37 H 1.09003 * 110.36829 * 155.85050 * 16 5 4 38 38 H 1.09002 * 110.36674 * 278.16527 * 16 5 4 39 39 H 1.08997 * 109.47301 * 299.99438 * 20 18 17 40 40 H 1.08996 * 109.47568 * 59.99687 * 20 18 17 41 41 H 1.08004 * 120.03576 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.89587 * 180.28416 * 23 22 21 43 43 H 1.08003 * 119.89511 * 359.97438 * 26 21 20 44 44 H 1.09004 * 110.30419 * 136.10654 * 27 25 24 45 45 H 1.08997 * 110.30664 * 258.26345 * 27 25 24 46 46 H 1.09003 * 110.82008 * 91.87408 * 28 27 25 47 47 H 1.08996 * 110.82451 * 215.22746 * 28 27 25 48 48 H 1.09005 * 110.30164 * 43.90632 * 29 24 23 49 49 H 1.09001 * 110.38866 * 281.80432 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7513 1.2417 5 6 3.2875 -1.5153 0.6902 6 1 4.1657 -0.8705 0.6591 7 7 3.5530 -2.7219 1.4777 8 6 4.7816 -3.3233 1.4156 9 1 5.5547 -2.9086 0.7858 10 6 5.0333 -4.4662 2.1622 11 7 6.2140 -5.0447 2.1021 12 14 3.6963 -5.1832 3.2520 13 1 2.8992 -6.1666 2.4756 14 1 4.3184 -5.8606 4.4180 15 1 2.8085 -4.0925 3.7289 16 6 2.8143 -1.8784 -0.7395 17 7 2.0299 -0.7124 -1.1850 18 6 1.8073 -0.3585 -2.4663 19 8 1.1436 0.6251 -2.7171 20 6 2.3831 -1.1849 -3.5871 21 6 1.9902 -0.5801 -4.9103 22 6 0.8224 -0.9787 -5.5337 23 6 0.4612 -0.4189 -6.7435 24 6 1.2715 0.5324 -7.3408 25 6 2.4419 0.9266 -6.7202 26 6 2.7992 0.3686 -5.5041 27 6 3.1441 1.9671 -7.5661 28 6 2.0693 2.4836 -8.5461 29 6 1.1070 1.2810 -8.6460 30 1 -0.3635 -1.0276 -0.0079 31 1 -0.3634 0.5071 0.8939 32 1 -0.3633 0.5207 -0.8860 33 1 1.3050 -1.4483 1.6162 34 1 2.3529 -0.0490 2.0201 35 1 2.8585 -3.0945 2.0431 36 1 6.3899 -5.8436 2.6235 37 1 3.6714 -2.0319 -1.3952 38 1 2.1885 -2.7705 -0.7168 39 1 3.4698 -1.2031 -3.5040 40 1 1.9969 -2.2022 -3.5240 41 1 0.1910 -1.7242 -5.0732 42 1 -0.4535 -0.7275 -7.2277 43 1 3.7134 0.6765 -5.0185 44 1 3.5072 2.7818 -6.9395 45 1 3.9698 1.5141 -8.1149 46 1 1.5586 3.3553 -8.1368 47 1 2.5085 2.7141 -9.5166 48 1 0.0792 1.6270 -8.7567 49 1 1.3836 0.6444 -9.4864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989785252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:13:01 Heat of formation + Delta-G solvation = -4.405773 kcal Electronic energy + Delta-G solvation = -27526.252628 eV Core-core repulsion = 23838.634380 eV Total energy + Delta-G solvation = -3687.618247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.46586 -39.76941 -37.61893 -35.98186 -34.35575 -32.48868 -31.66000 -31.49502 -30.36953 -28.94064 -27.94720 -26.42457 -25.53627 -23.70163 -22.75317 -21.81050 -20.98097 -20.48929 -20.15830 -18.60614 -17.76200 -16.89421 -16.30505 -16.21486 -15.92306 -15.25001 -15.05158 -14.79676 -14.55089 -14.13147 -13.67829 -13.44033 -13.32008 -13.14613 -13.12902 -13.03262 -12.72260 -12.66613 -12.46408 -12.30924 -11.98844 -11.82831 -11.74485 -11.45773 -11.41707 -11.29170 -11.17454 -11.04148 -10.87642 -10.79941 -10.70842 -10.42529 -10.11443 -9.70982 -9.66042 -9.09276 -8.78574 -8.43567 -8.40444 -7.44253 -5.88816 -3.27180 1.26462 1.37520 2.81661 3.14132 3.29587 3.32208 3.38613 3.72070 4.21250 4.37773 4.48206 4.63706 4.68381 4.74787 4.87213 4.94244 4.97812 5.06898 5.11559 5.13520 5.31168 5.34891 5.41869 5.44460 5.45305 5.46151 5.52381 5.54023 5.57288 5.62114 5.64687 5.71066 5.71364 5.90109 5.90652 5.97699 6.00252 6.05852 6.12397 6.22358 6.31472 6.35241 6.36051 6.55567 6.57918 6.59811 6.69299 6.96255 7.75955 7.85218 8.29628 8.36713 9.06238 9.78414 9.96448 11.28721 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.002467 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.673746 B =11349.149483 C =11997.450847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.139 4.139 5 C 0.178 3.822 6 H 0.073 0.927 7 N -0.737 5.737 8 C -0.254 4.254 9 H 0.092 0.908 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.073 3.927 17 N -0.612 5.612 18 C 0.530 3.470 19 O -0.542 6.542 20 C -0.100 4.100 21 C -0.057 4.057 22 C -0.105 4.105 23 C -0.107 4.107 24 C -0.103 4.103 25 C -0.098 4.098 26 C -0.091 4.091 27 C -0.082 4.082 28 C -0.121 4.121 29 C -0.081 4.081 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 12.060 -17.525 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.066 3.934 6 H 0.091 0.909 7 N -0.378 5.378 8 C -0.383 4.383 9 H 0.110 0.890 10 C -0.187 4.187 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.052 4.052 17 N -0.346 5.346 18 C 0.319 3.681 19 O -0.420 6.420 20 C -0.139 4.139 21 C -0.058 4.058 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.103 4.103 25 C -0.098 4.098 26 C -0.109 4.109 27 C -0.119 4.119 28 C -0.158 4.158 29 C -0.118 4.118 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.906 12.521 -17.756 24.311 hybrid contribution -0.845 -0.884 0.968 1.560 sum -11.751 11.637 -16.788 23.566 Atomic orbital electron populations 1.22128 0.95201 1.02065 1.02459 1.21470 0.94202 0.96169 0.84578 0.90939 1.23036 0.98848 0.99726 0.96203 1.21249 0.94970 0.88669 0.88520 0.90939 1.42662 1.13811 1.29243 1.52131 1.19055 0.89215 1.06546 1.23510 0.88980 1.24686 0.96423 0.97872 0.99697 1.69695 1.20987 1.22154 1.44671 0.86576 0.81943 0.79195 0.80942 1.20958 1.21613 1.20220 1.23409 0.94692 0.87538 0.99584 1.48648 1.52373 1.29052 1.04575 1.20109 0.80502 0.85244 0.82248 1.90679 1.40201 1.27683 1.83403 1.20654 1.03053 0.99943 0.90287 1.19166 0.95138 0.96880 0.94594 1.20852 0.96056 1.00205 0.95166 1.20516 0.99342 0.96967 0.95662 1.20529 0.95587 0.97516 0.96709 1.20483 0.96159 0.98230 0.94929 1.20425 0.99835 0.96286 0.94387 1.21038 0.97863 0.96613 0.96384 1.22286 0.96409 0.97691 0.99422 1.21015 1.00248 0.95905 0.94589 0.92675 0.91994 0.91501 0.90615 0.90090 0.80214 0.92865 0.90745 0.91294 0.87832 0.87941 0.86109 0.86444 0.86420 0.90771 0.90322 0.91016 0.90662 0.90941 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.10 37.15 0.34 -1.76 16 2 C 0.14 1.96 3.46 -66.95 -0.23 1.73 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -1.99 6.10 -24.89 -0.15 -2.15 16 5 C 0.18 3.08 3.69 -65.78 -0.24 2.84 16 6 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 7 N -0.74 -15.88 5.08 -51.35 -0.26 -16.14 16 8 C -0.25 -6.64 10.47 -15.06 -0.16 -6.80 16 9 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 11 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 12 Si 0.88 20.94 27.73 -169.99 -4.71 16.23 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 16 C 0.07 1.15 6.38 -2.53 -0.02 1.13 16 17 N -0.61 -9.07 3.06 -163.02 -0.50 -9.56 16 18 C 0.53 8.06 7.63 -10.99 -0.08 7.98 16 19 O -0.54 -9.76 15.07 5.56 0.08 -9.68 16 20 C -0.10 -1.25 4.84 -29.04 -0.14 -1.39 16 21 C -0.06 -0.74 4.37 -104.67 -0.46 -1.20 16 22 C -0.10 -1.29 9.70 -39.62 -0.38 -1.67 16 23 C -0.11 -1.22 10.04 -39.53 -0.40 -1.61 16 24 C -0.10 -1.16 6.14 -104.21 -0.64 -1.80 16 25 C -0.10 -1.14 6.14 -104.21 -0.64 -1.78 16 26 C -0.09 -1.16 9.70 -39.54 -0.38 -1.54 16 27 C -0.08 -0.73 6.77 -26.85 -0.18 -0.91 16 28 C -0.12 -0.90 7.08 -25.32 -0.18 -1.08 16 29 C -0.08 -0.67 6.77 -26.86 -0.18 -0.85 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.07 0.98 6.88 -51.93 -0.36 0.62 16 33 H 0.08 1.07 7.70 -51.93 -0.40 0.67 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.36 7.75 5.57 -40.82 -0.23 7.52 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 1.14 7.48 -51.93 -0.39 0.75 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.10 1.18 7.79 -51.93 -0.40 0.77 16 40 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 41 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -31.65 391.28 -11.08 -42.72 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.13 Total: 8.34 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -4.23 Total: -10.68 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.01 Total: -52.83 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.65 -11.08 -42.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989785252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.317 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds