Wall clock time and date at job start Sat Apr 11 2020 02:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08993 * 109.46905 * 2 1 4 4 C 1.50697 * 109.46888 * 239.99616 * 2 1 3 5 5 O 1.21279 * 120.00276 * 239.99561 * 4 2 1 6 6 N 1.34784 * 119.99816 * 60.00589 * 4 2 1 7 7 C 1.46496 * 119.99710 * 179.97438 * 6 4 2 8 8 C 1.51229 * 111.07568 * 78.36067 * 7 6 4 9 9 C 1.56584 * 104.17690 * 84.75720 * 8 7 6 10 10 C 1.56283 * 106.06743 * 6.57636 * 9 8 7 11 11 C 1.50514 * 101.76023 * 24.68075 * 10 9 8 12 12 H 1.08999 * 107.73900 * 66.76671 * 11 10 9 13 13 N 1.42698 * 128.17027 * 198.66761 * 11 10 9 14 14 C 1.36937 * 127.10729 * 331.69956 * 13 11 10 15 15 H 1.07997 * 119.99669 * 8.14644 * 14 13 11 16 16 C 1.38814 * 120.00050 * 188.14421 * 14 13 11 17 17 N 1.31615 * 119.99963 * 7.96457 * 16 14 13 18 18 Si 1.86797 * 119.99617 * 187.96224 * 16 14 13 19 19 H 1.48499 * 109.47263 * 94.78581 * 18 16 14 20 20 H 1.48505 * 109.46803 * 214.78409 * 18 16 14 21 21 H 1.48497 * 109.47316 * 334.78227 * 18 16 14 22 22 C 1.49302 * 105.78986 * 151.73686 * 13 11 10 23 23 C 1.52139 * 111.09403 * 298.98208 * 7 6 4 24 24 C 1.50701 * 109.46792 * 119.99795 * 2 1 3 25 25 C 1.38236 * 120.00001 * 239.99452 * 24 2 1 26 26 C 1.38236 * 119.99952 * 180.02562 * 25 24 2 27 27 C 1.38229 * 119.99993 * 0.02562 * 26 25 24 28 28 C 1.38237 * 120.00102 * 0.24629 * 27 26 25 29 29 C 1.38238 * 120.00134 * 359.49667 * 28 27 26 30 30 H 1.08996 * 109.46678 * 59.99912 * 1 2 3 31 31 H 1.08993 * 109.46905 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46590 * 300.00115 * 1 2 3 33 33 H 0.97000 * 120.00094 * 359.97438 * 6 4 2 34 34 H 1.09001 * 110.40899 * 202.67174 * 8 7 6 35 35 H 1.08994 * 110.40704 * 325.10916 * 8 7 6 36 36 H 1.08999 * 109.73975 * 247.60535 * 9 8 7 37 37 H 1.09001 * 110.50633 * 125.95823 * 9 8 7 38 38 H 1.09003 * 110.96964 * 266.56070 * 10 9 8 39 39 H 1.09004 * 110.96852 * 142.79777 * 10 9 8 40 40 H 0.97000 * 119.99668 * 180.02562 * 17 16 14 41 41 H 1.09004 * 110.04488 * 232.07722 * 22 13 11 42 42 H 1.09001 * 110.09343 * 110.62733 * 22 13 11 43 43 H 1.08999 * 111.14741 * 43.91550 * 23 7 6 44 44 H 1.08994 * 111.15107 * 168.09951 * 23 7 6 45 45 H 1.07996 * 119.99822 * 0.02562 * 25 24 2 46 46 H 1.07998 * 119.99916 * 179.97438 * 26 25 24 47 47 H 1.08006 * 119.99899 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.99951 * 179.72609 * 28 27 26 49 49 H 1.07995 * 119.99956 * 180.22997 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.3830 -2.1847 -3.9306 9 6 0.1514 -1.6634 -4.7450 10 6 0.4285 -0.1515 -5.0278 11 6 1.9308 -0.0958 -4.9533 12 1 2.3264 -0.6695 -5.7914 13 7 2.7625 1.0484 -4.7653 14 6 2.4869 2.3391 -5.1303 15 1 1.5043 2.5988 -5.4956 16 6 3.4703 3.3137 -5.0305 17 7 4.7071 2.9729 -4.7366 18 14 3.0382 5.1088 -5.3136 19 1 2.7523 5.7606 -4.0102 20 1 4.1798 5.7951 -5.9703 21 1 1.8393 5.1980 -6.1852 22 6 3.9959 0.5474 -4.0893 23 6 3.7161 -0.9396 -3.7004 24 6 2.0324 -0.7104 1.2305 25 6 2.8272 -0.0386 2.1404 26 6 3.2883 -0.6904 3.2689 27 6 2.9551 -2.0140 3.4872 28 6 2.1650 -2.6875 2.5744 29 6 1.6994 -2.0342 1.4486 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1489 0.5385 -2.5436 34 1 1.9577 -2.8858 -4.5358 35 1 1.0718 -2.6533 -2.9970 36 1 -0.7561 -1.7743 -4.1516 37 1 0.0553 -2.2096 -5.6834 38 1 -0.0238 0.4780 -4.2614 39 1 0.0764 0.1307 -6.0201 40 1 5.3942 3.6540 -4.6665 41 1 4.1969 1.1363 -3.1944 42 1 4.8449 0.6020 -4.7708 43 1 4.1416 -1.1779 -2.7256 44 1 4.0849 -1.6229 -4.4653 45 1 3.0878 0.9954 1.9696 46 1 3.9096 -0.1657 3.9795 47 1 3.3158 -2.5234 4.3686 48 1 1.9083 -3.7229 2.7428 49 1 1.0790 -2.5593 0.7375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992426497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:13:12 Heat of formation + Delta-G solvation = 22.403628 kcal Electronic energy + Delta-G solvation = -29475.956797 eV Core-core repulsion = 25789.501092 eV Total energy + Delta-G solvation = -3686.455704 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.62352 -39.42869 -37.80732 -34.42210 -34.07970 -32.90160 -31.66655 -30.82735 -29.95944 -29.09107 -26.95570 -25.85935 -24.63102 -24.01794 -22.52629 -22.02822 -20.55353 -20.03335 -19.50002 -18.65735 -16.97651 -16.66028 -16.46677 -15.78439 -15.34079 -15.02222 -14.64593 -14.51958 -14.27664 -13.93973 -13.86020 -13.67512 -13.39094 -13.21675 -12.71683 -12.51895 -12.33693 -12.21315 -12.13116 -11.92087 -11.58041 -11.40666 -11.30734 -11.03566 -10.91855 -10.89283 -10.85605 -10.81368 -10.49955 -10.25860 -10.04066 -9.99150 -9.70496 -9.53712 -9.04115 -8.77869 -8.67436 -8.61420 -8.41240 -6.85261 -5.78226 -3.12025 1.41946 1.51404 3.10553 3.35373 3.41111 3.43574 3.59259 3.97765 4.43497 4.62180 4.62913 4.84595 5.03876 5.09619 5.14576 5.19953 5.21521 5.24797 5.37662 5.44537 5.54512 5.59600 5.61148 5.68981 5.73234 5.82871 5.84574 5.93037 5.96475 6.02451 6.09299 6.12781 6.14114 6.26041 6.29816 6.35039 6.41786 6.49583 6.52856 6.57689 6.69467 6.72035 6.84646 6.90164 7.07793 7.22552 7.49155 7.60929 7.73763 8.08888 8.17507 8.74975 9.10294 9.77864 10.48386 11.35327 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.004127 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.055596 B = 6783.556268 C = 7884.969130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 H 0.103 0.897 4 C 0.519 3.481 5 O -0.539 6.539 6 N -0.689 5.689 7 C 0.133 3.867 8 C -0.111 4.111 9 C -0.116 4.116 10 C -0.115 4.115 11 C 0.158 3.842 12 H 0.021 0.979 13 N -0.582 5.582 14 C -0.234 4.234 15 H 0.078 0.922 16 C -0.002 4.002 17 N -0.914 5.914 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.181 3.819 23 C -0.141 4.141 24 C -0.058 4.058 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.083 4.083 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.253 0.747 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.858 -9.025 11.167 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 H 0.121 0.879 4 C 0.305 3.695 5 O -0.417 6.417 6 N -0.339 5.339 7 C 0.045 3.955 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.153 4.153 11 C 0.048 3.952 12 H 0.038 0.962 13 N -0.305 5.305 14 C -0.362 4.362 15 H 0.096 0.904 16 C -0.200 4.200 17 N -0.561 5.561 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.058 3.942 23 C -0.180 4.180 24 C -0.058 4.058 25 C -0.131 4.131 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.143 4.143 29 C -0.101 4.101 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.218 -9.486 11.177 16.806 hybrid contribution -0.221 1.478 -0.253 1.516 sum -8.439 -8.007 10.924 15.959 Atomic orbital electron populations 1.21764 0.92303 1.02679 1.02772 1.20339 0.97511 1.00596 0.91388 0.87881 1.20218 0.80409 0.84659 0.84256 1.90659 1.37771 1.26571 1.86675 1.45665 1.52519 1.31304 1.04423 1.21519 0.94107 0.92963 0.86940 1.22030 0.96474 0.96737 0.99713 1.22960 0.97611 0.95550 0.99312 1.21840 0.96796 0.95352 1.01340 1.20787 0.91521 0.89658 0.93244 0.96229 1.43612 1.15796 1.02618 1.68461 1.18988 0.96433 0.82800 1.37949 0.90410 1.24801 0.95219 0.98158 1.01784 1.69945 1.00175 1.31825 1.54116 0.86181 0.77245 0.85167 0.77637 1.21684 1.21787 1.20601 1.21901 0.88849 0.87390 0.96086 1.22801 0.93748 0.99691 1.01758 1.19337 0.97645 0.94344 0.94484 1.21052 0.97525 1.00003 0.94475 1.21044 1.00420 0.95044 0.97759 1.21083 0.98944 0.94874 0.99404 1.21076 0.98751 0.99615 0.94842 1.20882 0.99086 0.93795 0.96324 0.91586 0.92064 0.91544 0.76499 0.91298 0.91622 0.92328 0.91922 0.91800 0.91720 0.93687 0.93954 0.93340 0.90526 0.91770 0.86157 0.86322 0.86520 0.86425 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.90 37.16 0.33 -1.14 16 2 C -0.08 -1.04 2.90 -92.92 -0.27 -1.31 16 3 H 0.10 1.36 7.88 -51.93 -0.41 0.95 16 4 C 0.52 8.61 6.41 -10.98 -0.07 8.54 16 5 O -0.54 -10.45 13.22 5.56 0.07 -10.37 16 6 N -0.69 -11.54 4.37 -46.57 -0.20 -11.74 16 7 C 0.13 2.36 0.42 -130.70 -0.06 2.31 16 8 C -0.11 -1.69 6.24 -25.69 -0.16 -1.85 16 9 C -0.12 -1.56 6.95 -23.04 -0.16 -1.72 16 10 C -0.11 -1.83 6.46 -26.21 -0.17 -2.00 16 11 C 0.16 3.11 2.65 -68.72 -0.18 2.93 16 12 H 0.02 0.43 7.98 -51.93 -0.41 0.01 16 13 N -0.58 -13.96 3.16 -162.68 -0.51 -14.47 16 14 C -0.23 -6.13 10.26 -15.06 -0.15 -6.29 16 15 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 16 C 0.00 -0.06 5.45 -17.43 -0.10 -0.16 16 17 N -0.91 -26.34 10.80 55.49 0.60 -25.74 16 18 Si 0.91 21.39 29.56 -169.99 -5.02 16.37 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 C 0.18 4.38 5.28 -0.75 0.00 4.37 16 23 C -0.14 -2.86 6.10 -25.44 -0.16 -3.01 16 24 C -0.06 -0.79 4.40 -104.62 -0.46 -1.25 16 25 C -0.11 -1.46 9.67 -39.58 -0.38 -1.84 16 26 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 27 C -0.12 -1.42 10.05 -39.59 -0.40 -1.81 16 28 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 29 C -0.08 -1.11 7.93 -39.58 -0.31 -1.43 16 30 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 31 H 0.06 0.64 7.39 -51.93 -0.38 0.26 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 6.53 6.97 -40.82 -0.28 6.24 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.02 7.72 -51.93 -0.40 0.61 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.00 7.17 -51.93 -0.37 0.63 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.04 1.13 7.76 -51.93 -0.40 0.73 16 42 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 43 H 0.08 1.63 6.28 -51.93 -0.33 1.30 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.12 1.41 7.95 -52.49 -0.42 0.99 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 48 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 49 H 0.12 1.56 7.52 -52.49 -0.39 1.16 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -30.66 381.48 -10.76 -41.42 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.94 Total: 8.21 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -3.50 Total: -9.41 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.12 Total: -51.96 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.66 -10.76 -41.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992426497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.819 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds