Wall clock time and date at job start Sat Apr 11 2020 02:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08993 * 109.46905 * 2 1 4 4 C 1.50697 * 109.46888 * 239.99616 * 2 1 3 5 5 O 1.21279 * 120.00276 * 239.99561 * 4 2 1 6 6 N 1.34784 * 119.99816 * 60.00589 * 4 2 1 7 7 C 1.46496 * 119.99710 * 179.97438 * 6 4 2 8 8 C 1.51229 * 111.07568 * 78.36067 * 7 6 4 9 9 C 1.56584 * 104.17690 * 84.75720 * 8 7 6 10 10 C 1.56283 * 106.06743 * 6.57636 * 9 8 7 11 11 C 1.50514 * 101.76023 * 24.68075 * 10 9 8 12 12 H 1.08999 * 107.73900 * 66.76671 * 11 10 9 13 13 N 1.42698 * 128.17027 * 198.66761 * 11 10 9 14 14 C 1.36937 * 127.10729 * 331.69956 * 13 11 10 15 15 H 1.07997 * 119.99669 * 8.14644 * 14 13 11 16 16 C 1.38814 * 120.00050 * 188.14421 * 14 13 11 17 17 N 1.31615 * 119.99963 * 7.96457 * 16 14 13 18 18 Si 1.86797 * 119.99617 * 187.96224 * 16 14 13 19 19 H 1.48499 * 109.47263 * 94.78581 * 18 16 14 20 20 H 1.48505 * 109.46803 * 214.78409 * 18 16 14 21 21 H 1.48497 * 109.47316 * 334.78227 * 18 16 14 22 22 C 1.49302 * 105.78986 * 151.73686 * 13 11 10 23 23 C 1.52139 * 111.09403 * 298.98208 * 7 6 4 24 24 C 1.50701 * 109.46792 * 119.99795 * 2 1 3 25 25 C 1.38236 * 120.00001 * 239.99452 * 24 2 1 26 26 C 1.38236 * 119.99952 * 180.02562 * 25 24 2 27 27 C 1.38229 * 119.99993 * 0.02562 * 26 25 24 28 28 C 1.38237 * 120.00102 * 0.24629 * 27 26 25 29 29 C 1.38238 * 120.00134 * 359.49667 * 28 27 26 30 30 H 1.08996 * 109.46678 * 59.99912 * 1 2 3 31 31 H 1.08993 * 109.46905 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46590 * 300.00115 * 1 2 3 33 33 H 0.97000 * 120.00094 * 359.97438 * 6 4 2 34 34 H 1.09001 * 110.40899 * 202.67174 * 8 7 6 35 35 H 1.08994 * 110.40704 * 325.10916 * 8 7 6 36 36 H 1.08999 * 109.73975 * 247.60535 * 9 8 7 37 37 H 1.09001 * 110.50633 * 125.95823 * 9 8 7 38 38 H 1.09003 * 110.96964 * 266.56070 * 10 9 8 39 39 H 1.09004 * 110.96852 * 142.79777 * 10 9 8 40 40 H 0.97000 * 119.99668 * 180.02562 * 17 16 14 41 41 H 1.09004 * 110.04488 * 232.07722 * 22 13 11 42 42 H 1.09001 * 110.09343 * 110.62733 * 22 13 11 43 43 H 1.08999 * 111.14741 * 43.91550 * 23 7 6 44 44 H 1.08994 * 111.15107 * 168.09951 * 23 7 6 45 45 H 1.07996 * 119.99822 * 0.02562 * 25 24 2 46 46 H 1.07998 * 119.99916 * 179.97438 * 26 25 24 47 47 H 1.08006 * 119.99899 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.99951 * 179.72609 * 28 27 26 49 49 H 1.07995 * 119.99956 * 180.22997 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.3830 -2.1847 -3.9306 9 6 0.1514 -1.6634 -4.7450 10 6 0.4285 -0.1515 -5.0278 11 6 1.9308 -0.0958 -4.9533 12 1 2.3264 -0.6695 -5.7914 13 7 2.7625 1.0484 -4.7653 14 6 2.4869 2.3391 -5.1303 15 1 1.5043 2.5988 -5.4956 16 6 3.4703 3.3137 -5.0305 17 7 4.7071 2.9729 -4.7366 18 14 3.0382 5.1088 -5.3136 19 1 2.7523 5.7606 -4.0102 20 1 4.1798 5.7951 -5.9703 21 1 1.8393 5.1980 -6.1852 22 6 3.9959 0.5474 -4.0893 23 6 3.7161 -0.9396 -3.7004 24 6 2.0324 -0.7104 1.2305 25 6 2.8272 -0.0386 2.1404 26 6 3.2883 -0.6904 3.2689 27 6 2.9551 -2.0140 3.4872 28 6 2.1650 -2.6875 2.5744 29 6 1.6994 -2.0342 1.4486 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1489 0.5385 -2.5436 34 1 1.9577 -2.8858 -4.5358 35 1 1.0718 -2.6533 -2.9970 36 1 -0.7561 -1.7743 -4.1516 37 1 0.0553 -2.2096 -5.6834 38 1 -0.0238 0.4780 -4.2614 39 1 0.0764 0.1307 -6.0201 40 1 5.3942 3.6540 -4.6665 41 1 4.1969 1.1363 -3.1944 42 1 4.8449 0.6020 -4.7708 43 1 4.1416 -1.1779 -2.7256 44 1 4.0849 -1.6229 -4.4653 45 1 3.0878 0.9954 1.9696 46 1 3.9096 -0.1657 3.9795 47 1 3.3158 -2.5234 4.3686 48 1 1.9083 -3.7229 2.7428 49 1 1.0790 -2.5593 0.7375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992426497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:13:11 Heat of formation + Delta-G solvation = 6.354532 kcal Electronic energy + Delta-G solvation = -29476.652738 eV Core-core repulsion = 25789.501092 eV Total energy + Delta-G solvation = -3687.151645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03437 -40.56738 -39.06585 -36.14809 -35.17545 -34.26928 -33.49505 -31.75204 -31.57849 -30.11065 -28.54410 -27.34561 -25.97497 -25.59585 -23.49302 -23.15880 -22.18175 -21.32022 -20.97306 -20.08207 -18.36768 -18.11756 -17.70855 -17.34275 -16.50724 -16.36769 -16.07675 -15.83115 -15.70659 -15.61141 -15.03917 -14.95199 -14.43978 -14.15317 -14.13094 -14.02400 -13.68657 -13.61675 -13.22073 -13.04877 -13.00827 -12.92358 -12.80007 -12.62984 -12.46321 -12.16773 -12.10701 -12.03508 -11.83695 -11.79045 -11.75113 -11.53876 -11.35254 -11.06472 -10.71421 -10.43525 -9.84311 -9.73224 -9.58129 -8.85396 -7.85971 -5.21004 0.47191 0.57057 1.47704 1.48018 1.57316 1.79628 2.33626 2.50562 2.97852 3.10855 3.34593 3.62498 3.73329 3.84375 3.89593 4.08872 4.11313 4.16234 4.26262 4.29194 4.32196 4.35722 4.42521 4.43371 4.56493 4.63650 4.66137 4.70723 4.81166 4.84962 4.93777 4.96721 5.00384 5.08321 5.12279 5.14074 5.19995 5.23933 5.25352 5.32045 5.42732 5.56643 5.60200 5.61025 5.65850 5.66517 5.75003 5.84029 6.16481 6.17505 6.74244 7.02981 7.41689 7.76633 8.50658 9.27711 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.004127 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.055596 B = 6783.556268 C = 7884.969130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 H 0.101 0.899 4 C 0.518 3.482 5 O -0.569 6.569 6 N -0.688 5.688 7 C 0.142 3.858 8 C -0.106 4.106 9 C -0.101 4.101 10 C -0.110 4.110 11 C 0.145 3.855 12 H 0.009 0.991 13 N -0.594 5.594 14 C -0.232 4.232 15 H 0.090 0.910 16 C -0.063 4.063 17 N -0.952 5.952 18 Si 0.973 3.027 19 H -0.288 1.288 20 H -0.302 1.302 21 H -0.264 1.264 22 C 0.196 3.804 23 C -0.131 4.131 24 C -0.075 4.075 25 C -0.131 4.131 26 C -0.130 4.130 27 C -0.127 4.127 28 C -0.132 4.132 29 C -0.098 4.098 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.402 0.598 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.245 0.755 41 H 0.006 0.994 42 H 0.010 0.990 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.124 0.876 46 H 0.140 0.860 47 H 0.144 0.856 48 H 0.138 0.862 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.479 -9.826 11.921 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.093 4.093 3 H 0.119 0.881 4 C 0.305 3.695 5 O -0.448 6.448 6 N -0.338 5.338 7 C 0.054 3.946 8 C -0.145 4.145 9 C -0.139 4.139 10 C -0.148 4.148 11 C 0.036 3.964 12 H 0.027 0.973 13 N -0.317 5.317 14 C -0.361 4.361 15 H 0.108 0.892 16 C -0.256 4.256 17 N -0.601 5.601 18 Si 0.802 3.198 19 H -0.215 1.215 20 H -0.230 1.230 21 H -0.188 1.188 22 C 0.071 3.929 23 C -0.170 4.170 24 C -0.075 4.075 25 C -0.149 4.149 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.150 4.150 29 C -0.117 4.117 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.238 0.762 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.028 0.972 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.142 0.858 46 H 0.158 0.842 47 H 0.162 0.838 48 H 0.156 0.844 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.894 -10.303 11.924 19.158 hybrid contribution 0.665 1.677 -0.477 1.866 sum -10.229 -8.626 11.446 17.609 Atomic orbital electron populations 1.21745 0.89956 1.03235 1.03856 1.20330 0.99431 0.99776 0.89774 0.88122 1.20757 0.79632 0.84290 0.84849 1.90637 1.39037 1.28052 1.87112 1.45672 1.52466 1.31362 1.04337 1.21443 0.92420 0.94148 0.86569 1.22024 0.96863 0.95321 1.00284 1.22889 0.97394 0.93326 1.00273 1.21863 0.93416 0.97563 1.01969 1.21021 0.93775 0.87878 0.93695 0.97318 1.43733 1.16482 1.03249 1.68232 1.19412 0.96611 0.83759 1.36305 0.89215 1.25610 0.95169 1.02174 1.02649 1.70161 1.01163 1.32492 1.56235 0.85139 0.76966 0.80216 0.77502 1.21524 1.22961 1.18804 1.21543 0.88303 0.89438 0.93612 1.22635 0.96285 0.96876 1.01173 1.19455 0.98476 0.94828 0.94781 1.21270 0.97927 1.00554 0.95198 1.21377 1.00231 0.95515 0.97648 1.21451 0.98198 0.94792 1.00058 1.21396 0.98465 1.00677 0.94419 1.20982 0.99762 0.93856 0.97054 0.90855 0.91743 0.90062 0.76157 0.90734 0.91452 0.89874 0.90028 0.91262 0.91173 0.94622 0.97561 0.97203 0.91712 0.90782 0.85755 0.84170 0.83789 0.84395 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.90 71.99 0.64 -1.93 16 2 C -0.07 -1.91 2.90 -12.28 -0.04 -1.94 16 3 H 0.10 2.68 7.88 -2.39 -0.02 2.66 16 4 C 0.52 17.12 6.41 87.65 0.56 17.68 16 5 O -0.57 -22.18 13.22 -3.03 -0.04 -22.22 16 6 N -0.69 -22.71 4.37 -419.65 -1.83 -24.54 16 7 C 0.14 4.99 0.42 4.33 0.00 4.99 16 8 C -0.11 -2.99 6.24 31.27 0.20 -2.80 16 9 C -0.10 -2.34 6.95 32.99 0.23 -2.11 16 10 C -0.11 -3.22 6.46 30.93 0.20 -3.02 16 11 C 0.15 5.61 2.65 46.47 0.12 5.73 16 12 H 0.01 0.39 7.98 -2.39 -0.02 0.37 16 13 N -0.59 -29.00 3.16 -668.60 -2.11 -31.12 16 14 C -0.23 -12.25 10.26 84.03 0.86 -11.39 16 15 H 0.09 4.44 7.84 -2.91 -0.02 4.42 16 16 C -0.06 -3.47 5.45 84.86 0.46 -3.01 16 17 N -0.95 -57.26 10.80 21.65 0.23 -57.03 16 18 Si 0.97 44.53 29.56 68.60 2.03 46.56 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 22 C 0.20 9.93 5.28 86.96 0.46 10.39 16 23 C -0.13 -5.44 6.10 31.43 0.19 -5.25 16 24 C -0.07 -2.04 4.40 -19.86 -0.09 -2.12 16 25 C -0.13 -3.36 9.67 22.27 0.22 -3.14 16 26 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 27 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 28 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 29 C -0.10 -2.58 7.93 22.27 0.18 -2.40 16 30 H 0.07 1.33 7.56 -2.39 -0.02 1.31 16 31 H 0.06 1.23 7.39 -2.39 -0.02 1.22 16 32 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.40 12.81 6.97 -92.71 -0.65 12.16 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 1.92 7.72 -2.39 -0.02 1.90 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.97 7.17 -2.39 -0.02 1.95 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.01 0.34 7.76 -2.38 -0.02 0.32 16 42 H 0.01 0.56 7.51 -2.39 -0.02 0.54 16 43 H 0.06 2.85 6.28 -2.39 -0.01 2.84 16 44 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 45 H 0.12 2.93 7.95 -2.91 -0.02 2.90 16 46 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 47 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 48 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 49 H 0.11 2.96 7.52 -2.91 -0.02 2.94 16 Total: -1.00 -68.77 381.48 3.43 -65.34 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.29 Total: 31.11 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 4.87 Total: -8.10 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -3.71 Total: -112.69 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.04 Total: -22.22 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.77 3.43 -65.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992426497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.694 kcal (2) G-P(sol) polarization free energy of solvation -68.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds