Wall clock time and date at job start Sat Apr 11 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 5 5 O 1.21288 * 120.00047 * 240.00320 * 4 2 1 6 6 N 1.34779 * 120.00378 * 60.00080 * 4 2 1 7 7 C 1.46497 * 120.00488 * 180.02562 * 6 4 2 8 8 C 1.51235 * 111.06977 * 298.98706 * 7 6 4 9 9 C 1.55698 * 104.60646 * 276.10654 * 8 7 6 10 10 C 1.56283 * 105.93462 * 352.75275 * 9 8 7 11 11 C 1.50514 * 101.76118 * 335.74548 * 10 9 8 12 12 H 1.09008 * 108.54736 * 292.95726 * 11 10 9 13 13 N 1.42691 * 127.77568 * 161.09767 * 11 10 9 14 14 C 1.36938 * 127.10166 * 28.52732 * 13 11 10 15 15 H 1.08003 * 119.99792 * 0.02562 * 14 13 11 16 16 C 1.38815 * 120.00109 * 180.02562 * 14 13 11 17 17 N 1.31608 * 119.99911 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99927 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47137 * 90.00040 * 18 16 14 20 20 H 1.48498 * 109.47137 * 210.00451 * 18 16 14 21 21 H 1.48506 * 109.47371 * 330.00250 * 18 16 14 22 22 C 1.49287 * 105.79762 * 208.51498 * 13 11 10 23 23 C 1.52133 * 111.09773 * 78.35807 * 7 6 4 24 24 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 25 25 C 1.38231 * 120.00295 * 59.71763 * 24 2 1 26 26 C 1.38238 * 120.00421 * 179.74347 * 25 24 2 27 27 C 1.38242 * 119.99535 * 0.53515 * 26 25 24 28 28 C 1.38243 * 119.99986 * 359.74638 * 27 26 25 29 29 C 1.38236 * 119.99724 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 32 32 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 33 33 H 0.97003 * 119.99556 * 359.97438 * 6 4 2 34 34 H 1.08995 * 110.41115 * 34.88713 * 8 7 6 35 35 H 1.08997 * 110.40669 * 157.32682 * 8 7 6 36 36 H 1.08997 * 110.15518 * 111.86671 * 9 8 7 37 37 H 1.09001 * 110.15645 * 233.64034 * 9 8 7 38 38 H 1.09003 * 110.96830 * 93.86028 * 10 9 8 39 39 H 1.08995 * 110.96993 * 217.62243 * 10 9 8 40 40 H 0.97003 * 120.00245 * 180.02562 * 17 16 14 41 41 H 1.08999 * 110.05253 * 127.91937 * 22 13 11 42 42 H 1.09007 * 110.04994 * 249.39017 * 22 13 11 43 43 H 1.08993 * 111.15592 * 191.87107 * 23 7 6 44 44 H 1.09002 * 111.14812 * 316.09398 * 23 7 6 45 45 H 1.08000 * 120.00202 * 0.02562 * 25 24 2 46 46 H 1.07996 * 120.00657 * 180.30067 * 26 25 24 47 47 H 1.07995 * 120.00252 * 179.76439 * 27 26 25 48 48 H 1.07995 * 119.99783 * 179.97438 * 28 27 26 49 49 H 1.08000 * 119.99523 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1192 6 7 1.7068 -0.2501 -2.4546 7 6 2.1945 -0.9410 -3.6508 8 6 3.7061 -0.9412 -3.7001 9 6 4.0785 0.4324 -4.3315 10 6 2.7286 1.0760 -4.7854 11 6 1.8544 -0.1365 -4.9612 12 1 2.2340 -0.7190 -5.8007 13 7 0.4290 -0.1875 -5.0049 14 6 -0.4202 0.7996 -5.4286 15 1 -0.0224 1.7406 -5.7791 16 6 -1.7924 0.5909 -5.4078 17 7 -2.2772 -0.5556 -4.9803 18 14 -2.9509 1.9372 -5.9865 19 1 -3.2000 1.7838 -7.4423 20 1 -4.2366 1.8340 -5.2506 21 1 -2.3369 3.2641 -5.7265 22 6 0.0548 -1.5392 -4.4937 23 6 1.3764 -2.1924 -3.9322 24 6 2.0324 -0.7104 1.2304 25 6 1.6937 -2.0321 1.4522 26 6 2.1589 -2.6854 2.5781 27 6 2.9537 -2.0136 3.4881 28 6 3.2876 -0.6901 3.2693 29 6 2.8272 -0.0386 2.1403 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.1488 0.5384 -2.5436 34 1 4.1192 -1.0220 -2.6948 35 1 4.0658 -1.7575 -4.3266 36 1 4.5665 1.0661 -3.5910 37 1 4.7325 0.2858 -5.1910 38 1 2.3314 1.7348 -4.0131 39 1 2.8487 1.6103 -5.7278 40 1 -3.2361 -0.7016 -4.9660 41 1 -0.6810 -1.4462 -3.6949 42 1 -0.3476 -2.1471 -5.3041 43 1 1.8573 -2.8154 -4.6863 44 1 1.1932 -2.7564 -3.0176 45 1 1.0694 -2.5558 0.7434 46 1 1.8982 -3.7195 2.7489 47 1 3.3140 -2.5227 4.3697 48 1 3.9082 -0.1651 3.9803 49 1 3.0878 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992426501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:13:14 Heat of formation + Delta-G solvation = 8.070927 kcal Electronic energy + Delta-G solvation = -29504.903584 eV Core-core repulsion = 25817.826367 eV Total energy + Delta-G solvation = -3687.077217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02445 -40.55895 -39.06289 -36.12410 -35.18453 -34.28008 -33.44829 -31.74053 -31.55478 -30.11785 -28.52312 -27.29181 -25.99564 -25.62241 -23.48564 -23.13190 -22.15930 -21.36101 -20.96482 -20.01881 -18.36756 -18.09452 -17.67865 -17.31717 -16.49013 -16.42830 -16.03061 -15.86151 -15.69065 -15.52743 -15.06106 -14.94140 -14.45120 -14.16867 -14.12543 -14.06426 -13.71805 -13.48203 -13.18603 -13.03741 -13.03104 -12.92573 -12.83581 -12.65240 -12.49236 -12.16868 -12.10592 -12.01355 -11.84759 -11.76982 -11.75814 -11.52895 -11.35977 -10.98735 -10.72061 -10.44519 -9.84432 -9.72270 -9.57619 -8.85732 -7.82038 -5.17829 0.48292 0.58253 1.49322 1.50309 1.58437 1.78166 2.34988 2.51915 2.99042 3.12756 3.38302 3.62565 3.71525 3.84043 3.90040 4.07381 4.12188 4.16921 4.25719 4.28444 4.31415 4.35937 4.41158 4.42715 4.59762 4.63141 4.65755 4.69777 4.81025 4.82238 4.90937 4.94102 4.99151 5.06822 5.12624 5.13662 5.20604 5.22205 5.24518 5.29386 5.49967 5.56545 5.61076 5.62299 5.67322 5.70230 5.76505 5.85130 6.17671 6.19336 6.75317 7.06351 7.40877 7.78579 8.50911 9.29387 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.003928 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.153794 B = 7127.273511 C = 8028.112844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 H 0.123 0.877 4 C 0.517 3.483 5 O -0.568 6.568 6 N -0.689 5.689 7 C 0.141 3.859 8 C -0.110 4.110 9 C -0.103 4.103 10 C -0.108 4.108 11 C 0.147 3.853 12 H 0.014 0.986 13 N -0.597 5.597 14 C -0.231 4.231 15 H 0.088 0.912 16 C -0.059 4.059 17 N -0.949 5.949 18 Si 0.971 3.029 19 H -0.294 1.294 20 H -0.299 1.299 21 H -0.265 1.265 22 C 0.192 3.808 23 C -0.129 4.129 24 C -0.074 4.074 25 C -0.105 4.105 26 C -0.135 4.135 27 C -0.126 4.126 28 C -0.126 4.126 29 C -0.121 4.121 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.402 0.598 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.245 0.755 41 H 0.034 0.966 42 H -0.001 1.001 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.130 0.870 47 H 0.144 0.856 48 H 0.148 0.852 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.135 2.651 13.449 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.087 4.087 3 H 0.141 0.859 4 C 0.304 3.696 5 O -0.448 6.448 6 N -0.339 5.339 7 C 0.053 3.947 8 C -0.149 4.149 9 C -0.141 4.141 10 C -0.146 4.146 11 C 0.038 3.962 12 H 0.031 0.969 13 N -0.320 5.320 14 C -0.360 4.360 15 H 0.106 0.894 16 C -0.252 4.252 17 N -0.598 5.598 18 Si 0.800 3.200 19 H -0.221 1.221 20 H -0.226 1.226 21 H -0.189 1.189 22 C 0.068 3.932 23 C -0.168 4.168 24 C -0.075 4.075 25 C -0.124 4.124 26 C -0.153 4.153 27 C -0.144 4.144 28 C -0.144 4.144 29 C -0.139 4.139 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.238 0.762 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.017 0.983 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.116 0.884 46 H 0.148 0.852 47 H 0.162 0.838 48 H 0.165 0.835 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.390 2.015 13.456 18.402 hybrid contribution -1.673 0.313 -0.869 1.911 sum 10.717 2.329 12.587 16.694 Atomic orbital electron populations 1.21719 0.91782 1.02242 1.03363 1.20303 0.97741 1.00804 0.89821 0.85907 1.20776 0.79678 0.84334 0.84791 1.90640 1.39570 1.27420 1.87129 1.45731 1.52285 1.31530 1.04395 1.21436 0.93459 0.93197 0.86572 1.21882 0.92775 0.98614 1.01613 1.22748 0.95996 0.94704 1.00618 1.21821 0.94922 0.96482 1.01399 1.21039 0.84962 0.96564 0.93630 0.96877 1.43770 1.00428 1.13058 1.74722 1.19373 0.87423 0.94220 1.34969 0.89434 1.25518 0.98291 0.99097 1.02289 1.70121 1.11364 1.24675 1.53602 0.85188 0.78334 0.79397 0.77055 1.22110 1.22597 1.18935 1.21926 0.92290 0.83863 0.95137 1.22890 0.97241 0.96683 1.00017 1.19430 0.98594 0.94376 0.95070 1.20950 0.99760 0.94617 0.97048 1.21340 0.98806 1.00540 0.94614 1.21452 0.97999 0.95217 0.99748 1.21431 1.00160 0.95092 0.97737 1.21294 0.97285 1.00807 0.94518 0.89604 0.92210 0.93594 0.76188 0.91349 0.90704 0.90584 0.90015 0.91600 0.91159 0.94593 0.94759 0.98302 0.90628 0.92458 0.88409 0.85185 0.83823 0.83451 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.90 71.98 0.64 -2.89 16 2 C -0.07 -1.72 2.90 -12.28 -0.04 -1.76 16 3 H 0.12 2.60 7.88 -2.39 -0.02 2.58 16 4 C 0.52 17.01 6.43 87.66 0.56 17.57 16 5 O -0.57 -21.74 13.25 -3.05 -0.04 -21.78 16 6 N -0.69 -23.41 4.20 -419.66 -1.76 -25.17 16 7 C 0.14 5.04 0.42 4.33 0.00 5.04 16 8 C -0.11 -3.35 5.98 30.95 0.18 -3.17 16 9 C -0.10 -2.62 6.94 32.67 0.23 -2.39 16 10 C -0.11 -3.32 6.45 30.93 0.20 -3.12 16 11 C 0.15 5.68 2.62 46.47 0.12 5.80 16 12 H 0.01 0.56 7.99 -2.38 -0.02 0.54 16 13 N -0.60 -28.50 3.04 -665.52 -2.02 -30.52 16 14 C -0.23 -11.97 10.28 84.03 0.86 -11.11 16 15 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16 17 N -0.95 -55.02 10.55 21.65 0.23 -54.79 16 18 Si 0.97 43.83 29.55 68.60 2.03 45.86 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 C 0.19 9.40 5.37 87.52 0.47 9.87 16 23 C -0.13 -5.19 6.41 31.99 0.21 -4.98 16 24 C -0.07 -1.96 4.39 -19.87 -0.09 -2.05 16 25 C -0.11 -3.00 7.94 22.27 0.18 -2.83 16 26 C -0.14 -3.23 10.05 22.27 0.22 -3.01 16 27 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 28 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 29 C -0.12 -2.62 9.67 22.27 0.22 -2.41 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.72 7.56 -2.39 -0.02 1.70 16 32 H 0.04 1.35 7.37 -2.39 -0.02 1.33 16 33 H 0.40 13.98 7.37 -92.71 -0.68 13.30 16 34 H 0.07 2.23 6.21 -2.39 -0.01 2.22 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 2.03 7.52 -2.39 -0.02 2.01 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.03 1.87 7.05 -2.39 -0.02 1.85 16 42 H 0.00 -0.07 7.99 -2.38 -0.02 -0.09 16 43 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.06 2.38 7.78 -2.39 -0.02 2.36 16 45 H 0.10 3.10 7.52 -2.91 -0.02 3.08 16 46 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 47 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 48 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 49 H 0.14 2.33 7.95 -2.91 -0.02 2.31 16 Total: -1.00 -65.19 381.58 3.56 -61.62 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.25 Total: 33.37 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 4.88 Total: -8.59 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -3.56 Total: -110.48 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.04 Total: -21.78 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -65.19 3.56 -61.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992426501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.694 kcal (2) G-P(sol) polarization free energy of solvation -65.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds