Wall clock time and date at job start Sat Apr 11 2020 02:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47086 * 2 1 4 4 C 1.50699 * 109.46956 * 119.99782 * 2 1 3 5 5 O 1.21290 * 119.99592 * 119.99916 * 4 2 1 6 6 N 1.34771 * 120.00446 * 299.99953 * 4 2 1 7 7 C 1.46501 * 119.99874 * 179.97438 * 6 4 2 8 8 C 1.51216 * 111.06784 * 291.66043 * 7 6 4 9 9 C 1.55056 * 104.91778 * 275.58330 * 8 7 6 10 10 C 1.56283 * 105.91759 * 353.32931 * 9 8 7 11 11 C 1.50521 * 101.75763 * 335.35998 * 10 9 8 12 12 H 1.09007 * 108.14698 * 293.07382 * 11 10 9 13 13 N 1.42706 * 128.13752 * 161.28814 * 11 10 9 14 14 C 1.36939 * 127.10507 * 28.34757 * 13 11 10 15 15 H 1.08002 * 119.99375 * 359.97438 * 14 13 11 16 16 C 1.38808 * 119.99979 * 180.02562 * 14 13 11 17 17 N 1.31612 * 120.00461 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99545 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47279 * 60.00076 * 18 16 14 20 20 H 1.48504 * 109.46792 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47214 * 299.99759 * 18 16 14 22 22 C 1.49302 * 105.79510 * 208.30871 * 13 11 10 23 23 C 1.52130 * 111.08065 * 71.70300 * 7 6 4 24 24 C 1.50693 * 109.47282 * 240.00134 * 2 1 3 25 25 C 1.38233 * 120.00207 * 119.99468 * 24 2 1 26 26 C 1.38234 * 120.00037 * 179.72405 * 25 24 2 27 27 C 1.38235 * 120.00220 * 0.28719 * 26 25 24 28 28 C 1.38238 * 119.99712 * 359.97124 * 27 26 25 29 29 C 1.38234 * 120.00028 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46985 * 299.99894 * 1 2 3 32 32 H 1.08997 * 109.46979 * 59.99645 * 1 2 3 33 33 H 0.96999 * 119.99908 * 0.02562 * 6 4 2 34 34 H 1.09002 * 110.41262 * 34.91978 * 8 7 6 35 35 H 1.08999 * 110.40926 * 157.35920 * 8 7 6 36 36 H 1.09000 * 110.48859 * 234.04672 * 9 8 7 37 37 H 1.09001 * 109.84561 * 112.26774 * 9 8 7 38 38 H 1.09001 * 110.97235 * 217.24161 * 10 9 8 39 39 H 1.08998 * 110.96906 * 93.47419 * 10 9 8 40 40 H 0.97000 * 120.00397 * 179.97438 * 17 16 14 41 41 H 1.08997 * 110.04419 * 127.92709 * 22 13 11 42 42 H 1.08995 * 110.04767 * 249.40012 * 22 13 11 43 43 H 1.09011 * 111.14635 * 191.83140 * 23 7 6 44 44 H 1.08994 * 111.15369 * 316.05721 * 23 7 6 45 45 H 1.08002 * 120.00157 * 0.02562 * 25 24 2 46 46 H 1.07999 * 120.00009 * 180.25939 * 26 25 24 47 47 H 1.07996 * 120.00490 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.99691 * 179.97438 * 28 27 26 49 49 H 1.07999 * 119.99968 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1947 -0.9409 3.6507 8 6 1.5500 -2.3013 3.7935 9 6 0.2013 -2.0307 4.5091 10 6 0.2191 -0.5175 4.8993 11 6 1.6962 -0.2358 4.9678 12 1 2.1101 -0.7960 5.8064 13 7 2.3553 1.0290 4.9203 14 6 1.8555 2.2368 5.3285 15 1 0.8584 2.2976 5.7390 16 6 2.6300 3.3830 5.2137 17 7 3.8449 3.3090 4.7129 18 14 1.9478 5.0307 5.7699 19 1 1.6149 4.9661 7.2156 20 1 2.9645 6.0892 5.5434 21 1 0.7221 5.3467 4.9933 22 6 3.7026 0.7635 4.3345 23 6 3.6876 -0.7185 3.8404 24 6 2.0324 -0.7103 -1.2304 25 6 2.8270 -0.0385 -2.1404 26 6 3.2925 -0.6918 -3.2662 27 6 2.9585 -2.0152 -3.4850 28 6 2.1594 -2.6855 -2.5777 29 6 1.6949 -2.0325 -1.4514 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.1488 0.5385 2.5436 34 1 1.3838 -2.7481 2.8133 35 1 2.1700 -2.9530 4.4091 36 1 0.1131 -2.6482 5.4031 37 1 -0.6258 -2.2334 3.8287 38 1 -0.2536 -0.3590 5.8686 39 1 -0.2584 0.0893 4.1301 40 1 4.3860 4.1100 4.6324 41 1 3.8843 1.4353 3.4957 42 1 4.4730 0.8964 5.0940 43 1 4.0921 -1.3899 4.5980 44 1 4.2239 -0.8241 2.8974 45 1 3.0882 0.9954 -1.9693 46 1 3.9168 -0.1681 -3.9750 47 1 3.3218 -2.5255 -4.3647 48 1 1.8981 -3.7194 -2.7490 49 1 1.0702 -2.5561 -0.7428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992437149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:13:19 Heat of formation + Delta-G solvation = 22.369578 kcal Electronic energy + Delta-G solvation = -29477.565125 eV Core-core repulsion = 25791.107944 eV Total energy + Delta-G solvation = -3686.457181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62316 -39.43626 -37.80862 -34.46084 -34.05899 -32.92153 -31.66972 -30.82723 -29.95743 -29.07992 -26.96368 -25.85058 -24.60601 -24.05072 -22.52314 -22.01928 -20.51274 -20.04019 -19.49431 -18.60514 -16.96577 -16.64522 -16.47857 -15.78475 -15.30741 -15.05559 -14.69140 -14.52776 -14.21209 -13.95204 -13.82993 -13.64477 -13.40432 -13.21097 -12.71481 -12.56456 -12.33981 -12.18689 -12.10977 -11.85052 -11.58655 -11.41306 -11.31356 -11.02892 -10.93427 -10.89623 -10.83364 -10.78026 -10.47609 -10.31478 -10.04737 -9.95923 -9.70619 -9.47406 -9.08617 -8.78419 -8.69457 -8.61550 -8.40239 -6.89126 -5.77480 -3.12409 1.42163 1.51391 3.12052 3.35410 3.40780 3.41993 3.60895 3.98649 4.42586 4.62983 4.64270 4.85468 5.04013 5.10363 5.15756 5.23098 5.23390 5.27107 5.39874 5.45150 5.55305 5.59379 5.61077 5.71138 5.75721 5.82855 5.86579 5.95795 5.98786 6.03845 6.10472 6.14598 6.15157 6.25969 6.32768 6.37279 6.43843 6.50339 6.52989 6.57687 6.66758 6.72447 6.82731 6.90791 7.07894 7.24508 7.50156 7.57906 7.74933 8.12239 8.16940 8.76825 9.10153 9.76821 10.46232 11.34454 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.003995 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.572442 B = 7006.986100 C = 8001.280879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 H 0.103 0.897 4 C 0.519 3.481 5 O -0.542 6.542 6 N -0.688 5.688 7 C 0.134 3.866 8 C -0.111 4.111 9 C -0.116 4.116 10 C -0.114 4.114 11 C 0.157 3.843 12 H 0.021 0.979 13 N -0.584 5.584 14 C -0.233 4.233 15 H 0.078 0.922 16 C -0.003 4.003 17 N -0.918 5.918 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.179 3.821 23 C -0.138 4.138 24 C -0.057 4.057 25 C -0.113 4.113 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.083 4.083 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.402 0.598 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.253 0.747 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 -9.574 -11.412 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 H 0.121 0.879 4 C 0.304 3.696 5 O -0.419 6.419 6 N -0.339 5.339 7 C 0.046 3.954 8 C -0.149 4.149 9 C -0.154 4.154 10 C -0.152 4.152 11 C 0.047 3.953 12 H 0.038 0.962 13 N -0.308 5.308 14 C -0.361 4.361 15 H 0.096 0.904 16 C -0.200 4.200 17 N -0.564 5.564 18 Si 0.739 3.261 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.055 3.945 23 C -0.177 4.177 24 C -0.057 4.057 25 C -0.131 4.131 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.143 4.143 29 C -0.101 4.101 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.238 0.762 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.821 -10.004 -11.429 16.266 hybrid contribution -0.376 1.394 0.436 1.508 sum -6.197 -8.610 -10.992 15.276 Atomic orbital electron populations 1.21766 0.92282 1.02668 1.02845 1.20333 0.97549 1.00582 0.91351 0.87870 1.20221 0.80426 0.84674 0.84280 1.90668 1.37962 1.26554 1.86743 1.45694 1.52546 1.31333 1.04313 1.21478 0.94833 0.92137 0.86943 1.21739 0.96193 0.96332 1.00679 1.22707 0.97187 0.96095 0.99446 1.21832 0.97140 0.95142 1.01102 1.20844 0.92438 0.88747 0.93301 0.96151 1.43666 1.12392 1.01856 1.72840 1.18962 0.98705 0.83256 1.35146 0.90385 1.24784 0.96276 0.97819 1.01100 1.69907 1.08912 1.27690 1.49935 0.86256 0.77711 0.83642 0.78447 1.21212 1.21654 1.21167 1.22000 0.86086 0.89161 0.97217 1.22773 0.94281 0.99835 1.00847 1.19342 0.97590 0.94332 0.94476 1.21052 0.97574 0.99982 0.94493 1.21044 1.00429 0.95019 0.97789 1.21081 0.98914 0.94902 0.99436 1.21076 0.98698 0.99634 0.94874 1.20884 0.99086 0.93832 0.96301 0.92084 0.91498 0.91552 0.76188 0.91226 0.91423 0.91981 0.92366 0.91860 0.91673 0.93624 0.91736 0.94774 0.91820 0.91425 0.86149 0.86331 0.86530 0.86430 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.90 37.16 0.33 -1.20 16 2 C -0.08 -1.04 2.90 -92.93 -0.27 -1.31 16 3 H 0.10 1.38 7.88 -51.93 -0.41 0.97 16 4 C 0.52 8.65 6.34 -10.99 -0.07 8.58 16 5 O -0.54 -10.47 13.28 5.55 0.07 -10.39 16 6 N -0.69 -11.75 4.27 -46.58 -0.20 -11.94 16 7 C 0.13 2.41 0.42 -130.71 -0.05 2.36 16 8 C -0.11 -1.73 6.01 -26.54 -0.16 -1.89 16 9 C -0.12 -1.61 6.91 -23.88 -0.17 -1.77 16 10 C -0.11 -1.84 6.47 -26.21 -0.17 -2.01 16 11 C 0.16 3.08 2.61 -68.71 -0.18 2.90 16 12 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 13 N -0.58 -13.88 3.12 -162.67 -0.51 -14.39 16 14 C -0.23 -6.05 10.29 -15.06 -0.15 -6.20 16 15 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 16 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 17 N -0.92 -25.96 10.55 55.49 0.59 -25.37 16 18 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.18 4.26 5.33 -0.75 0.00 4.26 16 23 C -0.14 -2.77 6.21 -25.44 -0.16 -2.93 16 24 C -0.06 -0.78 4.39 -104.63 -0.46 -1.24 16 25 C -0.11 -1.46 9.67 -39.58 -0.38 -1.84 16 26 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 27 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 28 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 29 C -0.08 -1.12 7.94 -39.58 -0.31 -1.43 16 30 H 0.06 0.66 7.38 -51.93 -0.38 0.27 16 31 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.40 6.92 7.22 -40.82 -0.29 6.62 16 34 H 0.07 1.13 6.84 -51.93 -0.36 0.78 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.05 7.37 -51.93 -0.38 0.66 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.06 1.71 7.05 -51.93 -0.37 1.34 16 42 H 0.03 0.89 7.98 -51.93 -0.41 0.48 16 43 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 44 H 0.07 1.41 7.17 -51.93 -0.37 1.04 16 45 H 0.12 1.39 7.95 -52.49 -0.42 0.98 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 47 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 49 H 0.12 1.56 7.52 -52.49 -0.39 1.17 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -29.96 381.18 -10.77 -40.73 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.95 Total: 8.88 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -3.50 Total: -9.47 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.12 Total: -51.70 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.96 -10.77 -40.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992437149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.099 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds