Wall clock time and date at job start Sat Apr 11 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47086 * 2 1 4 4 C 1.50699 * 109.46956 * 119.99782 * 2 1 3 5 5 O 1.21290 * 119.99592 * 119.99916 * 4 2 1 6 6 N 1.34771 * 120.00446 * 299.99953 * 4 2 1 7 7 C 1.46501 * 119.99874 * 179.97438 * 6 4 2 8 8 C 1.51216 * 111.06784 * 291.66043 * 7 6 4 9 9 C 1.55056 * 104.91778 * 275.58330 * 8 7 6 10 10 C 1.56283 * 105.91759 * 353.32931 * 9 8 7 11 11 C 1.50521 * 101.75763 * 335.35998 * 10 9 8 12 12 H 1.09007 * 108.14698 * 293.07382 * 11 10 9 13 13 N 1.42706 * 128.13752 * 161.28814 * 11 10 9 14 14 C 1.36939 * 127.10507 * 28.34757 * 13 11 10 15 15 H 1.08002 * 119.99375 * 359.97438 * 14 13 11 16 16 C 1.38808 * 119.99979 * 180.02562 * 14 13 11 17 17 N 1.31612 * 120.00461 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99545 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47279 * 60.00076 * 18 16 14 20 20 H 1.48504 * 109.46792 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47214 * 299.99759 * 18 16 14 22 22 C 1.49302 * 105.79510 * 208.30871 * 13 11 10 23 23 C 1.52130 * 111.08065 * 71.70300 * 7 6 4 24 24 C 1.50693 * 109.47282 * 240.00134 * 2 1 3 25 25 C 1.38233 * 120.00207 * 119.99468 * 24 2 1 26 26 C 1.38234 * 120.00037 * 179.72405 * 25 24 2 27 27 C 1.38235 * 120.00220 * 0.28719 * 26 25 24 28 28 C 1.38238 * 119.99712 * 359.97124 * 27 26 25 29 29 C 1.38234 * 120.00028 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46985 * 299.99894 * 1 2 3 32 32 H 1.08997 * 109.46979 * 59.99645 * 1 2 3 33 33 H 0.96999 * 119.99908 * 0.02562 * 6 4 2 34 34 H 1.09002 * 110.41262 * 34.91978 * 8 7 6 35 35 H 1.08999 * 110.40926 * 157.35920 * 8 7 6 36 36 H 1.09000 * 110.48859 * 234.04672 * 9 8 7 37 37 H 1.09001 * 109.84561 * 112.26774 * 9 8 7 38 38 H 1.09001 * 110.97235 * 217.24161 * 10 9 8 39 39 H 1.08998 * 110.96906 * 93.47419 * 10 9 8 40 40 H 0.97000 * 120.00397 * 179.97438 * 17 16 14 41 41 H 1.08997 * 110.04419 * 127.92709 * 22 13 11 42 42 H 1.08995 * 110.04767 * 249.40012 * 22 13 11 43 43 H 1.09011 * 111.14635 * 191.83140 * 23 7 6 44 44 H 1.08994 * 111.15369 * 316.05721 * 23 7 6 45 45 H 1.08002 * 120.00157 * 0.02562 * 25 24 2 46 46 H 1.07999 * 120.00009 * 180.25939 * 26 25 24 47 47 H 1.07996 * 120.00490 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.99691 * 179.97438 * 28 27 26 49 49 H 1.07999 * 119.99968 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1947 -0.9409 3.6507 8 6 1.5500 -2.3013 3.7935 9 6 0.2013 -2.0307 4.5091 10 6 0.2191 -0.5175 4.8993 11 6 1.6962 -0.2358 4.9678 12 1 2.1101 -0.7960 5.8064 13 7 2.3553 1.0290 4.9203 14 6 1.8555 2.2368 5.3285 15 1 0.8584 2.2976 5.7390 16 6 2.6300 3.3830 5.2137 17 7 3.8449 3.3090 4.7129 18 14 1.9478 5.0307 5.7699 19 1 1.6149 4.9661 7.2156 20 1 2.9645 6.0892 5.5434 21 1 0.7221 5.3467 4.9933 22 6 3.7026 0.7635 4.3345 23 6 3.6876 -0.7185 3.8404 24 6 2.0324 -0.7103 -1.2304 25 6 2.8270 -0.0385 -2.1404 26 6 3.2925 -0.6918 -3.2662 27 6 2.9585 -2.0152 -3.4850 28 6 2.1594 -2.6855 -2.5777 29 6 1.6949 -2.0325 -1.4514 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.1488 0.5385 2.5436 34 1 1.3838 -2.7481 2.8133 35 1 2.1700 -2.9530 4.4091 36 1 0.1131 -2.6482 5.4031 37 1 -0.6258 -2.2334 3.8287 38 1 -0.2536 -0.3590 5.8686 39 1 -0.2584 0.0893 4.1301 40 1 4.3860 4.1100 4.6324 41 1 3.8843 1.4353 3.4957 42 1 4.4730 0.8964 5.0940 43 1 4.0921 -1.3899 4.5980 44 1 4.2239 -0.8241 2.8974 45 1 3.0882 0.9954 -1.9693 46 1 3.9168 -0.1681 -3.9750 47 1 3.3218 -2.5255 -4.3647 48 1 1.8981 -3.7194 -2.7490 49 1 1.0702 -2.5561 -0.7428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992437149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:13:18 Heat of formation + Delta-G solvation = 7.217390 kcal Electronic energy + Delta-G solvation = -29478.222173 eV Core-core repulsion = 25791.107944 eV Total energy + Delta-G solvation = -3687.114229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04050 -40.57501 -39.06896 -36.16873 -35.16968 -34.30529 -33.47891 -31.74729 -31.57116 -30.10879 -28.55282 -27.33912 -25.97312 -25.60978 -23.48614 -23.14511 -22.14579 -21.34007 -20.96759 -20.02854 -18.36114 -18.10974 -17.70580 -17.31525 -16.48940 -16.37615 -16.14597 -15.84000 -15.69352 -15.55019 -15.03444 -14.95771 -14.44252 -14.15517 -14.13198 -14.06275 -13.68300 -13.53429 -13.18104 -13.04048 -13.02149 -12.91936 -12.83605 -12.62301 -12.45886 -12.18251 -12.10057 -12.03384 -11.83732 -11.80519 -11.75379 -11.54002 -11.33613 -10.99464 -10.70747 -10.47414 -9.84780 -9.73006 -9.57735 -8.86343 -7.82482 -5.18470 0.47685 0.57547 1.48916 1.50855 1.56995 1.79928 2.34179 2.51728 2.98391 3.10546 3.37544 3.62836 3.71979 3.85019 3.91846 4.09439 4.10826 4.16718 4.26516 4.29175 4.32588 4.35663 4.42454 4.43961 4.58549 4.63618 4.66431 4.70804 4.81469 4.84493 4.93521 4.95806 5.00390 5.07416 5.12274 5.13918 5.20309 5.23480 5.24887 5.29947 5.50103 5.56312 5.60542 5.61747 5.66297 5.69066 5.75640 5.84772 6.16943 6.18839 6.74847 7.05307 7.41357 7.78119 8.50801 9.29052 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.003995 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.572442 B = 7006.986100 C = 8001.280879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 H 0.101 0.899 4 C 0.518 3.482 5 O -0.569 6.569 6 N -0.689 5.689 7 C 0.142 3.858 8 C -0.106 4.106 9 C -0.102 4.102 10 C -0.108 4.108 11 C 0.146 3.854 12 H 0.013 0.987 13 N -0.596 5.596 14 C -0.233 4.233 15 H 0.089 0.911 16 C -0.060 4.060 17 N -0.951 5.951 18 Si 0.973 3.027 19 H -0.281 1.281 20 H -0.302 1.302 21 H -0.272 1.272 22 C 0.192 3.808 23 C -0.128 4.128 24 C -0.074 4.074 25 C -0.131 4.131 26 C -0.129 4.129 27 C -0.127 4.127 28 C -0.132 4.132 29 C -0.099 4.099 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.402 0.598 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.245 0.755 41 H 0.030 0.970 42 H -0.002 1.002 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.125 0.875 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.138 0.862 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.549 -10.741 -12.252 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.093 4.093 3 H 0.119 0.881 4 C 0.305 3.695 5 O -0.448 6.448 6 N -0.339 5.339 7 C 0.054 3.946 8 C -0.145 4.145 9 C -0.140 4.140 10 C -0.147 4.147 11 C 0.037 3.963 12 H 0.031 0.969 13 N -0.319 5.319 14 C -0.362 4.362 15 H 0.107 0.893 16 C -0.254 4.254 17 N -0.600 5.600 18 Si 0.802 3.198 19 H -0.208 1.208 20 H -0.228 1.228 21 H -0.198 1.198 22 C 0.068 3.932 23 C -0.167 4.167 24 C -0.075 4.075 25 C -0.149 4.149 26 C -0.147 4.147 27 C -0.145 4.145 28 C -0.149 4.149 29 C -0.117 4.117 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.238 0.762 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.016 0.984 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.143 0.857 46 H 0.159 0.841 47 H 0.162 0.838 48 H 0.156 0.844 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.001 -11.196 -12.265 18.434 hybrid contribution 0.359 1.712 0.688 1.879 sum -7.642 -9.485 -11.577 16.804 Atomic orbital electron populations 1.21740 0.90186 1.03188 1.03731 1.20319 0.99271 0.99831 0.89880 0.88108 1.20733 0.79654 0.84295 0.84781 1.90645 1.39132 1.27910 1.87139 1.45711 1.52512 1.31273 1.04370 1.21426 0.92965 0.93607 0.86626 1.21725 0.97212 0.94542 1.00983 1.22641 0.96487 0.94327 1.00511 1.21845 0.94197 0.96926 1.01721 1.21054 0.95004 0.86562 0.93716 0.96941 1.43772 1.12725 1.02824 1.72621 1.19361 0.98892 0.84063 1.33839 0.89333 1.25552 0.96644 1.01120 1.02041 1.70131 1.10243 1.27778 1.51818 0.85239 0.77031 0.79432 0.78128 1.20762 1.22820 1.19816 1.21655 0.85759 0.90942 0.94886 1.22617 0.96403 0.97347 1.00334 1.19442 0.98503 0.94814 0.94734 1.21271 0.97909 1.00553 0.95171 1.21382 1.00220 0.95468 0.97658 1.21453 0.98138 0.94834 1.00063 1.21393 0.98432 1.00687 0.94434 1.20979 0.99769 0.93895 0.97058 0.91718 0.91181 0.90043 0.76238 0.91563 0.90731 0.89926 0.90267 0.91132 0.91494 0.94614 0.95128 0.98351 0.90625 0.92561 0.85672 0.84103 0.83775 0.84404 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.90 71.98 0.64 -2.09 16 2 C -0.07 -1.94 2.90 -12.29 -0.04 -1.97 16 3 H 0.10 2.73 7.88 -2.39 -0.02 2.71 16 4 C 0.52 17.26 6.34 87.66 0.56 17.82 16 5 O -0.57 -22.03 13.28 -3.06 -0.04 -22.08 16 6 N -0.69 -23.35 4.27 -419.67 -1.79 -25.14 16 7 C 0.14 5.03 0.42 4.32 0.00 5.03 16 8 C -0.11 -3.10 6.01 30.72 0.18 -2.92 16 9 C -0.10 -2.46 6.91 32.44 0.22 -2.24 16 10 C -0.11 -3.25 6.47 30.93 0.20 -3.05 16 11 C 0.15 5.61 2.61 46.48 0.12 5.73 16 12 H 0.01 0.53 7.99 -2.38 -0.02 0.51 16 13 N -0.60 -28.77 3.12 -668.56 -2.09 -30.86 16 14 C -0.23 -12.16 10.29 84.03 0.86 -11.30 16 15 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 16 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 17 N -0.95 -55.94 10.55 21.65 0.23 -55.71 16 18 Si 0.97 44.10 29.55 68.60 2.03 46.12 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.19 9.58 5.33 86.96 0.46 10.04 16 23 C -0.13 -5.25 6.21 31.43 0.20 -5.05 16 24 C -0.07 -2.02 4.39 -19.87 -0.09 -2.11 16 25 C -0.13 -3.31 9.67 22.27 0.22 -3.09 16 26 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 27 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 28 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 29 C -0.10 -2.59 7.94 22.27 0.18 -2.41 16 30 H 0.06 1.30 7.38 -2.39 -0.02 1.28 16 31 H 0.07 1.40 7.56 -2.39 -0.02 1.38 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.40 13.72 7.22 -92.71 -0.67 13.05 16 34 H 0.07 2.03 6.84 -2.39 -0.02 2.01 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 1.99 7.37 -2.39 -0.02 1.97 16 40 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.03 1.71 7.05 -2.39 -0.02 1.70 16 42 H 0.00 -0.10 7.98 -2.39 -0.02 -0.12 16 43 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 44 H 0.06 2.42 7.17 -2.39 -0.02 2.41 16 45 H 0.13 2.90 7.95 -2.91 -0.02 2.87 16 46 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 47 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 48 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 49 H 0.11 2.96 7.52 -2.91 -0.02 2.93 16 Total: -1.00 -66.40 381.18 3.46 -62.94 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.27 Total: 32.83 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 4.86 Total: -8.11 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -3.65 Total: -111.71 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.04 Total: -22.08 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -66.40 3.46 -62.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992437149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.155 kcal (2) G-P(sol) polarization free energy of solvation -66.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds