Wall clock time and date at job start Sat Apr 11 2020 02:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.70251 * 2 1 4 4 C 1.53193 * 109.59102 * 239.64442 * 2 1 3 5 5 H 1.09001 * 109.49508 * 305.52878 * 4 2 1 6 6 N 1.46496 * 109.49557 * 65.62410 * 4 2 1 7 7 C 1.34784 * 120.00114 * 204.83996 * 6 4 2 8 8 O 1.21548 * 119.99720 * 0.02562 * 7 6 4 9 9 C 1.47841 * 120.00103 * 179.97438 * 7 6 4 10 10 C 1.39575 * 120.14512 * 359.73279 * 9 7 6 11 11 C 1.37964 * 119.85217 * 179.78871 * 10 9 7 12 12 C 1.38360 * 120.14117 * 0.47996 * 11 10 9 13 13 C 1.50706 * 119.85011 * 179.72668 * 12 11 10 14 14 C 1.53005 * 117.49678 * 8.64098 * 13 12 11 15 15 C 1.53004 * 117.49660 * 300.01906 * 13 12 11 16 16 C 1.38351 * 120.29438 * 359.74438 * 12 11 10 17 17 C 1.37958 * 120.14793 * 0.02605 * 16 12 11 18 18 C 1.53040 * 109.31632 * 185.57530 * 4 2 1 19 19 C 1.53043 * 109.53391 * 61.36387 * 18 4 2 20 20 C 1.53187 * 109.31711 * 298.63543 * 19 18 4 21 21 N 1.46926 * 108.77631 * 54.63292 * 20 19 18 22 22 C 1.36944 * 120.63035 * 126.12005 * 21 20 19 23 23 H 1.07995 * 119.99481 * 220.95238 * 22 21 20 24 24 C 1.38810 * 119.99671 * 40.94504 * 22 21 20 25 25 N 1.31617 * 119.99844 * 214.92463 * 24 22 21 26 26 Si 1.86795 * 120.00095 * 34.92856 * 24 22 21 27 27 H 1.48497 * 109.47312 * 84.63019 * 26 24 22 28 28 H 1.48502 * 109.47041 * 204.62791 * 26 24 22 29 29 H 1.48496 * 109.47194 * 324.62661 * 26 24 22 30 30 H 1.08999 * 109.47274 * 299.64892 * 1 2 3 31 31 H 1.09004 * 109.47107 * 59.64527 * 1 2 3 32 32 H 1.09002 * 109.46746 * 179.64500 * 1 2 3 33 33 H 0.97003 * 120.00390 * 24.83796 * 6 4 2 34 34 H 1.07996 * 120.07406 * 359.97438 * 10 9 7 35 35 H 1.08003 * 119.92530 * 180.22594 * 11 10 9 36 36 H 1.08996 * 115.55007 * 154.35360 * 13 12 11 37 37 H 1.08994 * 117.50044 * 0.02562 * 14 13 12 38 38 H 1.09000 * 117.49128 * 145.02845 * 14 13 12 39 39 H 1.08999 * 117.50171 * 214.97975 * 15 13 12 40 40 H 1.09000 * 117.49913 * 0.02562 * 15 13 12 41 41 H 1.08003 * 119.92548 * 179.97438 * 16 12 11 42 42 H 1.08002 * 120.07397 * 179.97438 * 17 16 12 43 43 H 1.09001 * 109.46045 * 301.34981 * 18 4 2 44 44 H 1.09001 * 109.44635 * 181.37602 * 18 4 2 45 45 H 1.08998 * 109.49338 * 178.68262 * 19 18 4 46 46 H 1.09000 * 109.49966 * 58.58619 * 19 18 4 47 47 H 1.09006 * 109.58211 * 294.85134 * 20 19 18 48 48 H 1.09001 * 109.70986 * 174.49523 * 20 19 18 49 49 H 0.96992 * 120.00338 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 1.6031 -1.7253 -1.2913 6 7 1.6706 0.0267 -2.4434 7 6 1.5505 -0.6043 -3.6284 8 8 1.7512 -1.8008 -3.7028 9 6 1.1735 0.1586 -4.8373 10 6 0.9358 1.5314 -4.7540 11 6 0.5886 2.2382 -5.8868 12 6 0.4661 1.5873 -7.1016 13 6 0.0805 2.3647 -8.3337 14 6 0.0365 3.8900 -8.2215 15 6 -1.2655 3.0921 -8.3175 16 6 0.6958 0.2258 -7.1901 17 6 1.0483 -0.4919 -6.0659 18 6 3.5676 -0.8479 -1.1701 19 6 3.9569 -1.6656 0.0636 20 6 3.4651 -0.9469 1.3238 21 7 2.0226 -0.6995 1.1945 22 6 1.1530 -1.1179 2.1662 23 1 0.2038 -1.5530 1.8903 24 6 1.4918 -0.9831 3.5055 25 7 1.1097 -1.8935 4.3759 26 14 2.4900 0.4904 4.0727 27 1 1.5804 1.6365 4.3263 28 1 3.2135 0.1466 5.3231 29 1 3.4697 0.8596 3.0196 30 1 -0.3634 0.5084 0.8931 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3633 -1.0277 -0.0064 33 1 1.5100 0.9815 -2.3840 34 1 1.0264 2.0398 -3.8055 35 1 0.4080 3.3012 -5.8244 36 1 0.4110 1.9387 -9.2809 37 1 0.2869 4.3312 -7.2568 38 1 0.3382 4.4677 -9.0953 39 1 -1.8203 3.1449 -9.2542 40 1 -1.8718 3.0086 -7.4156 41 1 0.5981 -0.2763 -8.1413 42 1 1.2269 -1.5547 -6.1362 43 1 4.0062 0.1475 -1.0992 44 1 3.9376 -1.3449 -2.0669 45 1 5.0412 -1.7694 0.1037 46 1 3.4983 -2.6527 0.0054 47 1 3.9903 0.0021 1.4317 48 1 3.6520 -1.5695 2.1987 49 1 1.3461 -1.7991 5.3118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994450388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:14:23 Heat of formation + Delta-G solvation = 33.033369 kcal Electronic energy + Delta-G solvation = -27854.650009 eV Core-core repulsion = 24168.655245 eV Total energy + Delta-G solvation = -3685.994764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.44965 -39.31010 -37.84384 -36.72018 -34.42845 -32.79092 -31.89228 -31.31942 -30.96248 -29.61535 -26.46431 -25.10146 -24.65444 -23.24312 -22.53827 -22.44105 -21.01945 -20.77612 -20.05915 -19.64194 -17.97188 -16.84274 -16.40813 -15.93940 -15.41068 -15.21335 -14.93870 -14.83985 -14.45794 -14.31461 -14.08421 -13.69013 -13.59622 -13.46879 -13.16250 -13.01092 -12.86326 -12.48428 -11.99439 -11.93037 -11.86442 -11.72554 -11.40668 -11.35620 -11.17028 -11.03567 -10.76814 -10.76076 -10.58090 -10.39707 -10.34040 -10.09445 -9.87494 -9.63679 -9.49803 -9.23642 -8.92420 -8.68263 -8.36222 -6.76070 -6.09586 -3.40609 0.63805 1.13265 2.77692 3.29423 3.39037 3.44506 3.49841 3.54201 3.81131 4.12031 4.40679 4.48546 4.55987 4.59829 4.65232 4.70973 4.89592 4.95866 5.08716 5.20371 5.25165 5.28565 5.36573 5.38413 5.45495 5.56164 5.62750 5.65408 5.66258 5.76252 5.80259 5.93651 6.07092 6.08717 6.16220 6.25778 6.26696 6.33790 6.35201 6.47683 6.53883 6.59208 6.61109 6.69060 6.87981 6.90662 7.01815 7.11517 7.68673 8.01100 8.35271 8.41917 8.97404 9.69758 10.17279 11.05621 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002548 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.634582 B =10987.210299 C =11494.946654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.164 3.836 3 H 0.029 0.971 4 C 0.131 3.869 5 H 0.091 0.909 6 N -0.714 5.714 7 C 0.555 3.445 8 O -0.538 6.538 9 C -0.132 4.132 10 C -0.082 4.082 11 C -0.130 4.130 12 C -0.032 4.032 13 C -0.123 4.123 14 C -0.176 4.176 15 C -0.168 4.168 16 C -0.123 4.123 17 C -0.057 4.057 18 C -0.118 4.118 19 C -0.134 4.134 20 C 0.141 3.859 21 N -0.590 5.590 22 C -0.277 4.277 23 H 0.077 0.923 24 C 0.052 3.948 25 N -0.878 5.878 26 Si 0.843 3.157 27 H -0.288 1.288 28 H -0.297 1.297 29 H -0.260 1.260 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.395 0.605 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.137 0.863 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.025 0.975 48 H 0.069 0.931 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 10.809 -24.370 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.057 3.943 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.109 0.891 6 N -0.364 5.364 7 C 0.341 3.659 8 O -0.416 6.416 9 C -0.135 4.135 10 C -0.100 4.100 11 C -0.148 4.148 12 C -0.032 4.032 13 C -0.141 4.141 14 C -0.213 4.213 15 C -0.204 4.204 16 C -0.141 4.141 17 C -0.076 4.076 18 C -0.157 4.157 19 C -0.174 4.174 20 C 0.016 3.984 21 N -0.314 5.314 22 C -0.404 4.404 23 H 0.095 0.905 24 C -0.151 4.151 25 N -0.516 5.516 26 Si 0.670 3.330 27 H -0.216 1.216 28 H -0.224 1.224 29 H -0.185 1.185 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.230 0.770 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.043 0.957 48 H 0.087 0.913 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.408 9.858 -24.176 26.112 hybrid contribution 0.515 1.374 0.520 1.556 sum 0.107 11.231 -23.657 26.188 Atomic orbital electron populations 1.21782 0.94958 1.02177 1.00250 1.20697 0.93914 0.93257 0.86448 0.95381 1.21760 0.94955 0.97134 0.83582 0.89134 1.46051 1.69884 1.12182 1.08287 1.18243 0.77354 0.87109 0.83168 1.90768 1.50580 1.14596 1.85690 1.20079 1.04940 0.94034 0.94492 1.21312 0.96931 0.93075 0.98709 1.20963 1.01693 1.00161 0.91973 1.19320 0.97013 0.93506 0.93392 1.21097 1.02089 0.93671 0.97250 1.23090 1.01602 0.92875 1.03741 1.23047 0.90350 1.03275 1.03769 1.20921 1.01134 0.93280 0.98760 1.21281 0.94764 1.00693 0.90868 1.21769 0.95538 0.99985 0.98366 1.22035 0.99400 1.00035 0.95917 1.21356 0.84584 0.96771 0.95725 1.44275 1.02486 1.65330 1.19317 1.18569 1.02240 1.35345 0.84287 0.90526 1.25552 0.96809 0.96910 0.95873 1.70082 1.46974 1.31032 1.03528 0.87365 0.80737 0.86749 0.78120 1.21557 1.22395 1.18492 0.91515 0.94347 0.92317 0.77047 0.85451 0.85436 0.86749 0.88171 0.88338 0.88328 0.88376 0.85418 0.84526 0.92735 0.92692 0.92681 0.91663 0.95729 0.91299 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 7.95 37.16 0.30 -2.16 16 2 C 0.16 3.12 3.03 -67.60 -0.21 2.92 16 3 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 4 C 0.13 2.29 1.99 -67.81 -0.14 2.15 16 5 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 6 N -0.71 -10.23 4.54 -54.63 -0.25 -10.48 16 7 C 0.55 8.51 7.74 -12.33 -0.10 8.41 16 8 O -0.54 -10.25 16.01 5.32 0.09 -10.17 16 9 C -0.13 -1.63 5.87 -104.97 -0.62 -2.25 16 10 C -0.08 -0.80 9.54 -39.18 -0.37 -1.18 16 11 C -0.13 -1.13 9.28 -39.64 -0.37 -1.49 16 12 C -0.03 -0.28 5.62 -104.53 -0.59 -0.86 16 13 C -0.12 -0.82 6.04 -91.76 -0.55 -1.37 16 14 C -0.18 -0.98 9.86 -26.72 -0.26 -1.24 16 15 C -0.17 -0.97 10.16 -26.73 -0.27 -1.24 16 16 C -0.12 -1.14 9.72 -39.64 -0.39 -1.52 16 17 C -0.06 -0.65 9.60 -39.19 -0.38 -1.03 16 18 C -0.12 -2.00 5.46 -26.69 -0.15 -2.15 16 19 C -0.13 -2.45 6.08 -26.61 -0.16 -2.61 16 20 C 0.14 3.02 4.59 -3.71 -0.02 3.00 16 21 N -0.59 -13.54 2.47 -164.77 -0.41 -13.95 16 22 C -0.28 -7.40 8.43 -15.06 -0.13 -7.53 16 23 H 0.08 2.21 6.81 -52.49 -0.36 1.85 16 24 C 0.05 1.43 4.81 -17.43 -0.08 1.35 16 25 N -0.88 -25.97 13.97 55.49 0.78 -25.20 16 26 Si 0.84 20.93 27.37 -169.99 -4.65 16.28 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.26 -6.17 5.24 56.52 0.30 -5.87 16 30 H 0.07 1.31 7.68 -51.93 -0.40 0.91 16 31 H 0.04 0.57 7.80 -51.93 -0.41 0.17 16 32 H 0.06 1.17 7.41 -51.93 -0.38 0.79 16 33 H 0.39 4.57 6.64 -40.82 -0.27 4.30 16 34 H 0.13 1.02 6.41 -52.49 -0.34 0.68 16 35 H 0.13 0.85 6.00 -52.48 -0.31 0.54 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.53 6.16 -51.93 -0.32 0.21 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.14 1.60 7.65 -52.49 -0.40 1.19 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.02 0.52 6.72 -51.93 -0.35 0.17 16 48 H 0.07 1.60 6.97 -51.93 -0.36 1.23 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -31.57 383.08 -10.91 -42.48 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.76 Total: 4.08 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -4.47 Total: -8.81 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.12 Total: -49.63 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.65 Total: 16.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.57 -10.91 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994450388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.511 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds