Wall clock time and date at job start Sat Apr 11 2020 02:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.70251 * 2 1 4 4 C 1.53193 * 109.59102 * 239.64442 * 2 1 3 5 5 H 1.09001 * 109.49508 * 305.52878 * 4 2 1 6 6 N 1.46496 * 109.49557 * 65.62410 * 4 2 1 7 7 C 1.34784 * 120.00114 * 204.83996 * 6 4 2 8 8 O 1.21548 * 119.99720 * 0.02562 * 7 6 4 9 9 C 1.47841 * 120.00103 * 179.97438 * 7 6 4 10 10 C 1.39575 * 120.14512 * 359.73279 * 9 7 6 11 11 C 1.37964 * 119.85217 * 179.78871 * 10 9 7 12 12 C 1.38360 * 120.14117 * 0.47996 * 11 10 9 13 13 C 1.50706 * 119.85011 * 179.72668 * 12 11 10 14 14 C 1.53005 * 117.49678 * 8.64098 * 13 12 11 15 15 C 1.53004 * 117.49660 * 300.01906 * 13 12 11 16 16 C 1.38351 * 120.29438 * 359.74438 * 12 11 10 17 17 C 1.37958 * 120.14793 * 0.02605 * 16 12 11 18 18 C 1.53040 * 109.31632 * 185.57530 * 4 2 1 19 19 C 1.53043 * 109.53391 * 61.36387 * 18 4 2 20 20 C 1.53187 * 109.31711 * 298.63543 * 19 18 4 21 21 N 1.46926 * 108.77631 * 54.63292 * 20 19 18 22 22 C 1.36944 * 120.63035 * 126.12005 * 21 20 19 23 23 H 1.07995 * 119.99481 * 220.95238 * 22 21 20 24 24 C 1.38810 * 119.99671 * 40.94504 * 22 21 20 25 25 N 1.31617 * 119.99844 * 214.92463 * 24 22 21 26 26 Si 1.86795 * 120.00095 * 34.92856 * 24 22 21 27 27 H 1.48497 * 109.47312 * 84.63019 * 26 24 22 28 28 H 1.48502 * 109.47041 * 204.62791 * 26 24 22 29 29 H 1.48496 * 109.47194 * 324.62661 * 26 24 22 30 30 H 1.08999 * 109.47274 * 299.64892 * 1 2 3 31 31 H 1.09004 * 109.47107 * 59.64527 * 1 2 3 32 32 H 1.09002 * 109.46746 * 179.64500 * 1 2 3 33 33 H 0.97003 * 120.00390 * 24.83796 * 6 4 2 34 34 H 1.07996 * 120.07406 * 359.97438 * 10 9 7 35 35 H 1.08003 * 119.92530 * 180.22594 * 11 10 9 36 36 H 1.08996 * 115.55007 * 154.35360 * 13 12 11 37 37 H 1.08994 * 117.50044 * 0.02562 * 14 13 12 38 38 H 1.09000 * 117.49128 * 145.02845 * 14 13 12 39 39 H 1.08999 * 117.50171 * 214.97975 * 15 13 12 40 40 H 1.09000 * 117.49913 * 0.02562 * 15 13 12 41 41 H 1.08003 * 119.92548 * 179.97438 * 16 12 11 42 42 H 1.08002 * 120.07397 * 179.97438 * 17 16 12 43 43 H 1.09001 * 109.46045 * 301.34981 * 18 4 2 44 44 H 1.09001 * 109.44635 * 181.37602 * 18 4 2 45 45 H 1.08998 * 109.49338 * 178.68262 * 19 18 4 46 46 H 1.09000 * 109.49966 * 58.58619 * 19 18 4 47 47 H 1.09006 * 109.58211 * 294.85134 * 20 19 18 48 48 H 1.09001 * 109.70986 * 174.49523 * 20 19 18 49 49 H 0.96992 * 120.00338 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 1.6031 -1.7253 -1.2913 6 7 1.6706 0.0267 -2.4434 7 6 1.5505 -0.6043 -3.6284 8 8 1.7512 -1.8008 -3.7028 9 6 1.1735 0.1586 -4.8373 10 6 0.9358 1.5314 -4.7540 11 6 0.5886 2.2382 -5.8868 12 6 0.4661 1.5873 -7.1016 13 6 0.0805 2.3647 -8.3337 14 6 0.0365 3.8900 -8.2215 15 6 -1.2655 3.0921 -8.3175 16 6 0.6958 0.2258 -7.1901 17 6 1.0483 -0.4919 -6.0659 18 6 3.5676 -0.8479 -1.1701 19 6 3.9569 -1.6656 0.0636 20 6 3.4651 -0.9469 1.3238 21 7 2.0226 -0.6995 1.1945 22 6 1.1530 -1.1179 2.1662 23 1 0.2038 -1.5530 1.8903 24 6 1.4918 -0.9831 3.5055 25 7 1.1097 -1.8935 4.3759 26 14 2.4900 0.4904 4.0727 27 1 1.5804 1.6365 4.3263 28 1 3.2135 0.1466 5.3231 29 1 3.4697 0.8596 3.0196 30 1 -0.3634 0.5084 0.8931 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3633 -1.0277 -0.0064 33 1 1.5100 0.9815 -2.3840 34 1 1.0264 2.0398 -3.8055 35 1 0.4080 3.3012 -5.8244 36 1 0.4110 1.9387 -9.2809 37 1 0.2869 4.3312 -7.2568 38 1 0.3382 4.4677 -9.0953 39 1 -1.8203 3.1449 -9.2542 40 1 -1.8718 3.0086 -7.4156 41 1 0.5981 -0.2763 -8.1413 42 1 1.2269 -1.5547 -6.1362 43 1 4.0062 0.1475 -1.0992 44 1 3.9376 -1.3449 -2.0669 45 1 5.0412 -1.7694 0.1037 46 1 3.4983 -2.6527 0.0054 47 1 3.9903 0.0021 1.4317 48 1 3.6520 -1.5695 2.1987 49 1 1.3461 -1.7991 5.3118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994450388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:14:23 Heat of formation + Delta-G solvation = 15.726686 kcal Electronic energy + Delta-G solvation = -27855.400483 eV Core-core repulsion = 24168.655245 eV Total energy + Delta-G solvation = -3686.745238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48629 -40.30469 -39.22262 -37.40320 -35.95454 -34.47723 -33.52820 -32.49262 -31.75683 -30.98927 -28.00159 -26.74949 -25.77569 -23.90935 -23.84973 -23.01526 -22.37203 -21.97619 -21.34032 -20.85758 -19.07235 -18.34849 -17.60872 -17.21529 -16.63129 -16.24837 -16.12856 -15.98000 -15.91123 -15.40942 -15.28536 -15.08800 -14.82916 -14.75607 -14.42316 -14.28033 -13.79830 -13.73077 -13.69147 -13.38292 -12.99817 -12.73162 -12.64502 -12.48881 -12.38888 -12.28876 -12.06071 -11.98436 -11.87149 -11.75203 -11.58599 -11.55067 -11.31268 -11.22761 -10.97996 -10.49291 -10.10354 -9.97318 -9.53588 -8.66361 -8.23694 -5.51380 -0.18939 0.40036 1.41001 1.47586 1.56228 1.80769 2.08921 2.49844 2.73982 2.95901 3.16450 3.41349 3.54943 3.74458 3.83655 3.87635 3.96124 3.99202 4.03968 4.12512 4.16140 4.28202 4.31013 4.41018 4.43199 4.55800 4.56212 4.70939 4.76024 4.79664 4.84144 4.90168 4.97556 4.98944 5.06266 5.07147 5.10254 5.16834 5.20723 5.24943 5.29057 5.33848 5.38754 5.41094 5.46099 5.59008 5.60552 5.90357 5.94989 6.27260 6.55118 7.00798 7.21717 7.65981 8.15061 8.96032 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002548 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.634582 B =10987.210299 C =11494.946654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.162 3.838 3 H 0.056 0.944 4 C 0.144 3.856 5 H 0.052 0.948 6 N -0.701 5.701 7 C 0.554 3.446 8 O -0.585 6.585 9 C -0.155 4.155 10 C -0.077 4.077 11 C -0.131 4.131 12 C -0.027 4.027 13 C -0.136 4.136 14 C -0.170 4.170 15 C -0.166 4.166 16 C -0.126 4.126 17 C -0.072 4.072 18 C -0.110 4.110 19 C -0.127 4.127 20 C 0.138 3.862 21 N -0.604 5.604 22 C -0.262 4.262 23 H 0.040 0.960 24 C -0.002 4.002 25 N -0.929 5.929 26 Si 0.910 3.090 27 H -0.290 1.290 28 H -0.304 1.304 29 H -0.237 1.237 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.412 0.588 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.147 0.853 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.041 0.959 47 H 0.040 0.960 48 H 0.043 0.957 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 14.595 -26.966 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.056 3.944 3 H 0.073 0.927 4 C 0.038 3.962 5 H 0.070 0.930 6 N -0.352 5.352 7 C 0.343 3.657 8 O -0.467 6.467 9 C -0.158 4.158 10 C -0.095 4.095 11 C -0.148 4.148 12 C -0.027 4.027 13 C -0.154 4.154 14 C -0.206 4.206 15 C -0.203 4.203 16 C -0.143 4.143 17 C -0.091 4.091 18 C -0.149 4.149 19 C -0.166 4.166 20 C 0.013 3.987 21 N -0.329 5.329 22 C -0.392 4.392 23 H 0.058 0.942 24 C -0.201 4.201 25 N -0.571 5.571 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.231 1.231 29 H -0.161 1.161 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.250 0.750 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.164 0.836 42 H 0.141 0.859 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.567 13.702 -26.814 30.117 hybrid contribution 0.128 0.167 1.162 1.181 sum 0.695 13.869 -25.652 29.169 Atomic orbital electron populations 1.21704 0.94778 1.00670 1.01283 1.20860 0.94177 0.94103 0.85222 0.92682 1.21330 0.95308 0.95444 0.84162 0.92993 1.45794 1.69599 1.12784 1.07069 1.18736 0.76220 0.86702 0.84004 1.90743 1.52734 1.16777 1.86399 1.19883 1.07688 0.95059 0.93197 1.21516 0.95983 0.91864 1.00168 1.21273 1.00782 1.01334 0.91434 1.19641 0.95299 0.93336 0.94407 1.21167 1.03130 0.94420 0.96681 1.23201 1.00921 0.91956 1.04561 1.23109 0.90212 1.02805 1.04190 1.21120 1.00657 0.93797 0.98761 1.21309 0.95742 1.00398 0.91643 1.21707 0.94844 1.00901 0.97457 1.21933 1.00947 0.98643 0.95112 1.21394 0.83789 0.97266 0.96242 1.44387 1.02768 1.66150 1.19586 1.18397 1.01422 1.34043 0.85295 0.94239 1.26086 0.99024 0.98951 0.96025 1.70185 1.50147 1.32933 1.03801 0.86310 0.79582 0.82738 0.77758 1.21746 1.23145 1.16068 0.93013 0.90601 0.95193 0.74993 0.83408 0.82975 0.85792 0.87737 0.87127 0.87200 0.88867 0.83555 0.85949 0.90380 0.92720 0.89778 0.93964 0.94184 0.93799 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 7.95 71.98 0.57 -4.04 16 2 C 0.16 5.97 3.03 44.97 0.14 6.11 16 3 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 4 C 0.14 4.92 1.99 45.07 0.09 5.01 16 5 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 6 N -0.70 -18.95 4.54 -445.04 -2.02 -20.97 16 7 C 0.55 16.81 7.74 86.78 0.67 17.48 16 8 O -0.59 -23.00 16.01 -3.87 -0.06 -23.06 16 9 C -0.16 -3.66 5.87 -20.09 -0.12 -3.78 16 10 C -0.08 -1.30 9.54 22.53 0.21 -1.08 16 11 C -0.13 -1.83 9.28 22.23 0.21 -1.62 16 12 C -0.03 -0.39 5.62 -19.81 -0.11 -0.50 16 13 C -0.14 -1.37 6.04 -11.53 -0.07 -1.44 16 14 C -0.17 -1.26 9.86 30.60 0.30 -0.96 16 15 C -0.17 -1.40 10.16 30.60 0.31 -1.09 16 16 C -0.13 -2.12 9.72 22.23 0.22 -1.91 16 17 C -0.07 -1.62 9.60 22.53 0.22 -1.41 16 18 C -0.11 -3.54 5.46 30.62 0.17 -3.37 16 19 C -0.13 -4.49 6.08 30.67 0.19 -4.30 16 20 C 0.14 5.73 4.59 86.36 0.40 6.13 16 21 N -0.60 -27.60 2.47 -675.22 -1.67 -29.27 16 22 C -0.26 -14.45 8.43 84.03 0.71 -13.74 16 23 H 0.04 2.43 6.81 -2.91 -0.02 2.41 16 24 C 0.00 -0.11 4.81 84.86 0.41 0.30 16 25 N -0.93 -57.07 13.97 21.65 0.30 -56.77 16 26 Si 0.91 43.53 27.37 68.60 1.88 45.41 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 29 H -0.24 -10.31 5.24 99.48 0.52 -9.79 16 30 H 0.05 2.02 7.68 -2.39 -0.02 2.00 16 31 H 0.08 2.14 7.80 -2.38 -0.02 2.12 16 32 H 0.03 1.23 7.41 -2.39 -0.02 1.21 16 33 H 0.41 8.19 6.64 -92.71 -0.62 7.58 16 34 H 0.15 1.78 6.41 -2.91 -0.02 1.76 16 35 H 0.15 1.36 6.00 -2.91 -0.02 1.35 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 0.68 6.16 -2.39 -0.01 0.67 16 38 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.12 3.02 7.65 -2.91 -0.02 2.99 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.08 2.49 8.14 -2.39 -0.02 2.48 16 46 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.04 1.56 6.72 -2.38 -0.02 1.55 16 48 H 0.04 2.03 6.97 -2.39 -0.02 2.01 16 49 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -71.92 383.08 3.09 -68.84 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.15 Total: 20.02 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 4.50 Total: -4.20 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -3.39 Total: -107.00 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.06 Total: -23.06 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -71.92 3.09 -68.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994450388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.565 kcal (2) G-P(sol) polarization free energy of solvation -71.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds