Wall clock time and date at job start Sat Apr 11 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.58895 * 2 1 4 4 C 1.53194 * 109.58331 * 120.28426 * 2 1 3 5 5 H 1.09005 * 109.49668 * 294.36766 * 4 2 1 6 6 N 1.46499 * 109.52821 * 54.45218 * 4 2 1 7 7 C 1.34774 * 119.99706 * 204.85481 * 6 4 2 8 8 O 1.21548 * 120.00534 * 0.02562 * 7 6 4 9 9 C 1.47849 * 119.99818 * 179.97438 * 7 6 4 10 10 C 1.39581 * 120.14073 * 359.72633 * 9 7 6 11 11 C 1.37962 * 119.85055 * 179.78929 * 10 9 7 12 12 C 1.38358 * 120.14179 * 0.48447 * 11 10 9 13 13 C 1.50701 * 119.85332 * 179.72143 * 12 11 10 14 14 C 1.53001 * 117.49730 * 8.76904 * 13 12 11 15 15 C 1.53000 * 117.49992 * 300.11248 * 13 12 11 16 16 C 1.38361 * 120.29766 * 359.74760 * 12 11 10 17 17 C 1.37965 * 120.14278 * 0.02562 * 16 12 11 18 18 C 1.53042 * 109.31447 * 174.42308 * 4 2 1 19 19 C 1.53052 * 109.53358 * 298.63301 * 18 4 2 20 20 C 1.53189 * 109.31422 * 61.36081 * 19 18 4 21 21 N 1.46923 * 109.58665 * 239.56545 * 2 1 3 22 22 C 1.36936 * 120.63101 * 6.59003 * 21 2 1 23 23 H 1.08004 * 119.99659 * 330.18020 * 22 21 2 24 24 C 1.38813 * 120.00636 * 150.18150 * 22 21 2 25 25 N 1.31625 * 119.99447 * 344.49475 * 24 22 21 26 26 Si 1.86792 * 120.00223 * 164.48844 * 24 22 21 27 27 H 1.48498 * 109.47190 * 60.00614 * 26 24 22 28 28 H 1.48508 * 109.47035 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47394 * 300.00011 * 26 24 22 30 30 H 1.08998 * 109.46759 * 299.72301 * 1 2 3 31 31 H 1.09003 * 109.46975 * 59.71606 * 1 2 3 32 32 H 1.08999 * 109.47479 * 179.72060 * 1 2 3 33 33 H 0.96994 * 119.99710 * 24.85125 * 6 4 2 34 34 H 1.07994 * 120.07291 * 359.97438 * 10 9 7 35 35 H 1.08000 * 119.93003 * 180.22806 * 11 10 9 36 36 H 1.09000 * 115.55261 * 154.44069 * 13 12 11 37 37 H 1.09002 * 117.50199 * 0.02562 * 14 13 12 38 38 H 1.09003 * 117.49843 * 145.01870 * 14 13 12 39 39 H 1.09001 * 117.50395 * 214.98067 * 15 13 12 40 40 H 1.09003 * 117.49505 * 359.97263 * 15 13 12 41 41 H 1.08000 * 119.92966 * 179.97438 * 16 12 11 42 42 H 1.07992 * 120.07226 * 179.97438 * 17 16 12 43 43 H 1.08998 * 109.46336 * 178.61293 * 18 4 2 44 44 H 1.09001 * 109.45304 * 58.64002 * 18 4 2 45 45 H 1.09000 * 109.49110 * 301.40967 * 19 18 4 46 46 H 1.08999 * 109.49484 * 181.31593 * 19 18 4 47 47 H 1.09004 * 109.58210 * 65.15665 * 20 19 18 48 48 H 1.08996 * 109.58770 * 185.57688 * 20 19 18 49 49 H 0.96997 * 119.99477 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 1.2464 5 1 1.7660 -0.1641 2.1371 6 7 1.4513 -2.0663 1.3106 7 6 1.3314 -2.6938 2.4973 8 8 1.7140 -2.1491 3.5143 9 6 0.7332 -4.0443 2.5622 10 6 0.2866 -4.6698 1.3971 11 6 -0.2666 -5.9319 1.4640 12 6 -0.3883 -6.5733 2.6839 13 6 -0.9993 -7.9493 2.7503 14 6 -1.2746 -8.6646 1.4261 15 6 -2.4371 -8.1086 2.2522 16 6 0.0481 -5.9569 3.8432 17 6 0.6074 -4.6969 3.7896 18 6 3.5674 -0.8466 1.1714 19 6 3.9568 -1.6660 -0.0613 20 6 3.4650 -0.9489 -1.3225 21 7 2.0225 -0.7012 -1.1935 22 6 1.1536 -1.1163 -2.1671 23 1 0.1397 -1.3831 -1.9078 24 6 1.5759 -1.1944 -3.4871 25 7 2.6866 -0.5940 -3.8592 26 14 0.5682 -2.1515 -4.7351 27 1 -0.7924 -1.5638 -4.8280 28 1 1.2295 -2.0823 -6.0630 29 1 0.4667 -3.5696 -4.3065 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8875 32 1 -0.3634 -1.0276 -0.0050 33 1 1.1456 -2.5008 0.4991 34 1 0.3766 -4.1682 0.4450 35 1 -0.6092 -6.4186 0.5628 36 1 -0.6896 -8.5609 3.5977 37 1 -1.0135 -8.1401 0.5069 38 1 -1.1464 -9.7468 1.4025 39 1 -3.0733 -8.8251 2.7717 40 1 -2.9413 -7.2180 1.8769 41 1 -0.0502 -6.4629 4.7923 42 1 0.9472 -4.2167 4.6952 43 1 3.9377 -1.3423 2.0687 44 1 4.0060 0.1487 1.0991 45 1 3.4982 -2.6530 -0.0017 46 1 5.0411 -1.7700 -0.1013 47 1 3.9904 -0.0001 -1.4316 48 1 3.6517 -1.5748 -2.1950 49 1 2.9819 -0.6489 -4.7815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994450390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:14:27 Heat of formation + Delta-G solvation = 30.689557 kcal Electronic energy + Delta-G solvation = -28677.948868 eV Core-core repulsion = 24991.852468 eV Total energy + Delta-G solvation = -3686.096399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.27995 -39.19748 -37.65093 -36.52312 -33.98467 -32.53545 -31.88265 -30.96817 -30.73062 -29.22172 -26.34549 -25.08532 -24.65486 -23.05318 -22.35450 -22.18385 -21.15434 -20.71331 -19.93571 -18.73783 -17.88249 -16.66514 -16.38185 -15.48656 -15.32903 -14.98888 -14.89059 -14.79109 -14.27722 -14.05595 -13.87534 -13.55554 -13.44431 -13.13724 -12.98527 -12.79979 -12.71932 -12.53822 -11.86149 -11.82869 -11.54891 -11.29423 -11.25141 -11.15259 -10.99526 -10.86784 -10.73284 -10.63736 -10.59513 -10.54443 -10.14371 -10.03383 -9.69023 -9.56494 -9.31964 -9.03115 -8.73085 -8.54152 -8.40624 -6.70062 -5.84659 -3.30422 0.83921 1.33850 2.97156 3.31943 3.38031 3.39327 3.59257 3.62806 4.00732 4.28804 4.41765 4.57814 4.67625 4.77949 4.87937 4.94334 5.13970 5.28005 5.30164 5.31103 5.37279 5.46307 5.54366 5.57179 5.60134 5.73594 5.77151 5.81107 5.84401 5.95787 5.96461 6.11068 6.21508 6.27871 6.31399 6.39461 6.42877 6.46257 6.52591 6.66844 6.67424 6.77204 6.82865 6.93013 6.95797 7.10599 7.35906 7.63326 7.74078 8.02039 8.38934 8.61264 9.14778 9.77730 10.35579 11.23301 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.004042 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.916851 B = 6925.840743 C = 8728.317092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.134 3.866 5 H 0.077 0.923 6 N -0.694 5.694 7 C 0.551 3.449 8 O -0.554 6.554 9 C -0.132 4.132 10 C -0.078 4.078 11 C -0.129 4.129 12 C -0.033 4.033 13 C -0.122 4.122 14 C -0.176 4.176 15 C -0.168 4.168 16 C -0.126 4.126 17 C -0.059 4.059 18 C -0.121 4.121 19 C -0.140 4.140 20 C 0.172 3.828 21 N -0.586 5.586 22 C -0.259 4.259 23 H 0.069 0.931 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.408 0.592 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.135 0.865 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.018 0.982 48 H 0.085 0.915 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 -11.904 11.681 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.058 0.942 4 C 0.027 3.973 5 H 0.095 0.905 6 N -0.345 5.345 7 C 0.338 3.662 8 O -0.434 6.434 9 C -0.135 4.135 10 C -0.097 4.097 11 C -0.147 4.147 12 C -0.034 4.034 13 C -0.140 4.140 14 C -0.213 4.213 15 C -0.205 4.205 16 C -0.144 4.144 17 C -0.078 4.078 18 C -0.160 4.160 19 C -0.180 4.180 20 C 0.046 3.954 21 N -0.310 5.310 22 C -0.388 4.388 23 H 0.087 0.913 24 C -0.191 4.191 25 N -0.542 5.542 26 Si 0.729 3.271 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.245 0.755 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.144 0.856 42 H 0.153 0.847 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.036 0.964 48 H 0.103 0.897 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.529 -11.458 12.169 17.605 hybrid contribution -0.483 -0.667 -1.186 1.444 sum -6.012 -12.125 10.983 17.429 Atomic orbital electron populations 1.21785 0.95654 1.01412 1.00477 1.20725 0.93343 0.93946 0.86797 0.94231 1.21565 0.92948 0.82891 0.99848 0.90535 1.45944 1.61048 1.18594 1.08914 1.18264 0.78815 0.85175 0.83923 1.90711 1.50898 1.67204 1.34591 1.20089 1.03404 0.95541 0.94475 1.21442 0.95527 0.94763 0.97934 1.20987 1.01032 0.95077 0.97561 1.19302 0.96767 0.93937 0.93355 1.21078 0.99001 0.94686 0.99191 1.23106 1.02840 1.00348 0.95026 1.23046 0.90445 1.03426 1.03594 1.20877 1.00394 0.95260 0.97873 1.21228 0.95431 0.93784 0.97377 1.21773 0.95444 1.00467 0.98272 1.22145 0.98954 0.99545 0.97319 1.20789 0.83166 0.97162 0.94244 1.44151 1.03109 1.64765 1.18939 1.19091 0.95177 1.38352 0.86201 0.91319 1.25101 0.97766 0.99298 0.96962 1.70016 1.23977 1.43375 1.16834 0.86437 0.79682 0.80162 0.80839 1.20891 1.21689 1.21024 0.94162 0.91749 0.92879 0.75468 0.85010 0.85424 0.86866 0.88060 0.88397 0.88447 0.88401 0.85620 0.84750 0.93087 0.91873 0.92899 0.93439 0.96362 0.89663 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.72 37.16 0.29 -2.16 16 2 C 0.16 3.13 3.20 -67.60 -0.22 2.91 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.13 2.41 2.32 -67.81 -0.16 2.25 16 5 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 6 N -0.69 -11.91 3.42 -54.63 -0.19 -12.09 16 7 C 0.55 9.52 7.74 -12.33 -0.10 9.43 16 8 O -0.55 -10.97 16.01 5.32 0.09 -10.88 16 9 C -0.13 -1.95 5.87 -104.97 -0.62 -2.57 16 10 C -0.08 -1.04 9.54 -39.18 -0.37 -1.42 16 11 C -0.13 -1.50 9.28 -39.64 -0.37 -1.87 16 12 C -0.03 -0.36 5.62 -104.53 -0.59 -0.95 16 13 C -0.12 -1.04 6.03 -91.77 -0.55 -1.59 16 14 C -0.18 -1.36 9.86 -26.70 -0.26 -1.62 16 15 C -0.17 -1.28 10.16 -26.70 -0.27 -1.55 16 16 C -0.13 -1.39 9.72 -39.64 -0.39 -1.78 16 17 C -0.06 -0.78 9.60 -39.18 -0.38 -1.16 16 18 C -0.12 -2.17 5.58 -26.68 -0.15 -2.32 16 19 C -0.14 -2.67 5.93 -26.61 -0.16 -2.83 16 20 C 0.17 3.89 5.28 -3.71 -0.02 3.87 16 21 N -0.59 -13.30 2.64 -164.78 -0.44 -13.74 16 22 C -0.26 -6.38 8.58 -15.06 -0.13 -6.51 16 23 H 0.07 1.64 6.23 -52.48 -0.33 1.31 16 24 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16 25 N -0.90 -24.81 11.23 55.49 0.62 -24.19 16 26 Si 0.90 20.48 29.58 -169.99 -5.03 15.45 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.24 7.67 -51.93 -0.40 0.85 16 32 H 0.05 0.94 6.37 -51.93 -0.33 0.61 16 33 H 0.41 7.05 5.80 -40.82 -0.24 6.81 16 34 H 0.13 1.76 6.41 -52.49 -0.34 1.42 16 35 H 0.13 1.29 6.00 -52.49 -0.32 0.97 16 36 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.81 6.17 -51.93 -0.32 0.49 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.13 1.75 7.65 -52.49 -0.40 1.35 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 1.02 7.53 -51.93 -0.39 0.63 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 2.16 6.14 -51.93 -0.32 1.84 16 49 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -28.65 382.52 -11.25 -39.90 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.55 Total: 9.52 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -4.52 Total: -9.74 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.00 Total: -50.02 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.65 -11.25 -39.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994450390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.591 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds