Wall clock time and date at job start Sat Apr 11 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.58895 * 2 1 4 4 C 1.53194 * 109.58331 * 120.28426 * 2 1 3 5 5 H 1.09005 * 109.49668 * 294.36766 * 4 2 1 6 6 N 1.46499 * 109.52821 * 54.45218 * 4 2 1 7 7 C 1.34774 * 119.99706 * 204.85481 * 6 4 2 8 8 O 1.21548 * 120.00534 * 0.02562 * 7 6 4 9 9 C 1.47849 * 119.99818 * 179.97438 * 7 6 4 10 10 C 1.39581 * 120.14073 * 359.72633 * 9 7 6 11 11 C 1.37962 * 119.85055 * 179.78929 * 10 9 7 12 12 C 1.38358 * 120.14179 * 0.48447 * 11 10 9 13 13 C 1.50701 * 119.85332 * 179.72143 * 12 11 10 14 14 C 1.53001 * 117.49730 * 8.76904 * 13 12 11 15 15 C 1.53000 * 117.49992 * 300.11248 * 13 12 11 16 16 C 1.38361 * 120.29766 * 359.74760 * 12 11 10 17 17 C 1.37965 * 120.14278 * 0.02562 * 16 12 11 18 18 C 1.53042 * 109.31447 * 174.42308 * 4 2 1 19 19 C 1.53052 * 109.53358 * 298.63301 * 18 4 2 20 20 C 1.53189 * 109.31422 * 61.36081 * 19 18 4 21 21 N 1.46923 * 109.58665 * 239.56545 * 2 1 3 22 22 C 1.36936 * 120.63101 * 6.59003 * 21 2 1 23 23 H 1.08004 * 119.99659 * 330.18020 * 22 21 2 24 24 C 1.38813 * 120.00636 * 150.18150 * 22 21 2 25 25 N 1.31625 * 119.99447 * 344.49475 * 24 22 21 26 26 Si 1.86792 * 120.00223 * 164.48844 * 24 22 21 27 27 H 1.48498 * 109.47190 * 60.00614 * 26 24 22 28 28 H 1.48508 * 109.47035 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47394 * 300.00011 * 26 24 22 30 30 H 1.08998 * 109.46759 * 299.72301 * 1 2 3 31 31 H 1.09003 * 109.46975 * 59.71606 * 1 2 3 32 32 H 1.08999 * 109.47479 * 179.72060 * 1 2 3 33 33 H 0.96994 * 119.99710 * 24.85125 * 6 4 2 34 34 H 1.07994 * 120.07291 * 359.97438 * 10 9 7 35 35 H 1.08000 * 119.93003 * 180.22806 * 11 10 9 36 36 H 1.09000 * 115.55261 * 154.44069 * 13 12 11 37 37 H 1.09002 * 117.50199 * 0.02562 * 14 13 12 38 38 H 1.09003 * 117.49843 * 145.01870 * 14 13 12 39 39 H 1.09001 * 117.50395 * 214.98067 * 15 13 12 40 40 H 1.09003 * 117.49505 * 359.97263 * 15 13 12 41 41 H 1.08000 * 119.92966 * 179.97438 * 16 12 11 42 42 H 1.07992 * 120.07226 * 179.97438 * 17 16 12 43 43 H 1.08998 * 109.46336 * 178.61293 * 18 4 2 44 44 H 1.09001 * 109.45304 * 58.64002 * 18 4 2 45 45 H 1.09000 * 109.49110 * 301.40967 * 19 18 4 46 46 H 1.08999 * 109.49484 * 181.31593 * 19 18 4 47 47 H 1.09004 * 109.58210 * 65.15665 * 20 19 18 48 48 H 1.08996 * 109.58770 * 185.57688 * 20 19 18 49 49 H 0.96997 * 119.99477 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 1.2464 5 1 1.7660 -0.1641 2.1371 6 7 1.4513 -2.0663 1.3106 7 6 1.3314 -2.6938 2.4973 8 8 1.7140 -2.1491 3.5143 9 6 0.7332 -4.0443 2.5622 10 6 0.2866 -4.6698 1.3971 11 6 -0.2666 -5.9319 1.4640 12 6 -0.3883 -6.5733 2.6839 13 6 -0.9993 -7.9493 2.7503 14 6 -1.2746 -8.6646 1.4261 15 6 -2.4371 -8.1086 2.2522 16 6 0.0481 -5.9569 3.8432 17 6 0.6074 -4.6969 3.7896 18 6 3.5674 -0.8466 1.1714 19 6 3.9568 -1.6660 -0.0613 20 6 3.4650 -0.9489 -1.3225 21 7 2.0225 -0.7012 -1.1935 22 6 1.1536 -1.1163 -2.1671 23 1 0.1397 -1.3831 -1.9078 24 6 1.5759 -1.1944 -3.4871 25 7 2.6866 -0.5940 -3.8592 26 14 0.5682 -2.1515 -4.7351 27 1 -0.7924 -1.5638 -4.8280 28 1 1.2295 -2.0823 -6.0630 29 1 0.4667 -3.5696 -4.3065 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8875 32 1 -0.3634 -1.0276 -0.0050 33 1 1.1456 -2.5008 0.4991 34 1 0.3766 -4.1682 0.4450 35 1 -0.6092 -6.4186 0.5628 36 1 -0.6896 -8.5609 3.5977 37 1 -1.0135 -8.1401 0.5069 38 1 -1.1464 -9.7468 1.4025 39 1 -3.0733 -8.8251 2.7717 40 1 -2.9413 -7.2180 1.8769 41 1 -0.0502 -6.4629 4.7923 42 1 0.9472 -4.2167 4.6952 43 1 3.9377 -1.3423 2.0687 44 1 4.0060 0.1487 1.0991 45 1 3.4982 -2.6530 -0.0017 46 1 5.0411 -1.7700 -0.1013 47 1 3.9904 -0.0001 -1.4316 48 1 3.6517 -1.5748 -2.1950 49 1 2.9819 -0.6489 -4.7815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994450390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:14:26 Heat of formation + Delta-G solvation = 18.050156 kcal Electronic energy + Delta-G solvation = -28678.496953 eV Core-core repulsion = 24991.852468 eV Total energy + Delta-G solvation = -3686.644485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49580 -40.32127 -39.07131 -37.38511 -35.64499 -34.11558 -33.48513 -32.19393 -31.73460 -30.75900 -27.93221 -26.86050 -25.73275 -23.89131 -23.75638 -23.02520 -22.47408 -22.18297 -20.97343 -20.29025 -19.08152 -18.27071 -17.49774 -17.03205 -16.58937 -16.24275 -16.10354 -15.95760 -15.67559 -15.44601 -15.07281 -14.99553 -14.75448 -14.57314 -14.35359 -14.17447 -13.75573 -13.68583 -13.53547 -12.96414 -12.87064 -12.70215 -12.48969 -12.45777 -12.36118 -12.28027 -12.19265 -12.00313 -11.94803 -11.68894 -11.59981 -11.38367 -11.23070 -11.05177 -10.93150 -10.48376 -10.00011 -9.97703 -9.51904 -8.60489 -7.81244 -5.28334 -0.17580 0.39467 1.50985 1.52163 1.57876 1.84185 2.27497 2.54420 2.74902 3.16209 3.35097 3.54774 3.58473 3.77523 3.84764 3.95405 4.01107 4.04936 4.06272 4.14998 4.19486 4.31123 4.38092 4.40515 4.55005 4.56786 4.65150 4.74637 4.80233 4.84063 4.93531 4.97356 4.98778 5.02464 5.07259 5.11408 5.16340 5.21069 5.27923 5.32638 5.35649 5.40767 5.44118 5.54356 5.58590 5.63065 5.74376 5.79293 5.90893 6.44643 6.64379 7.19590 7.25327 7.89498 8.43655 9.25377 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.004042 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.916851 B = 6925.840743 C = 8728.317092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.157 3.843 3 H 0.033 0.967 4 C 0.142 3.858 5 H 0.080 0.920 6 N -0.692 5.692 7 C 0.553 3.447 8 O -0.583 6.583 9 C -0.155 4.155 10 C -0.084 4.084 11 C -0.133 4.133 12 C -0.026 4.026 13 C -0.131 4.131 14 C -0.176 4.176 15 C -0.163 4.163 16 C -0.122 4.122 17 C -0.066 4.066 18 C -0.115 4.115 19 C -0.126 4.126 20 C 0.180 3.820 21 N -0.596 5.596 22 C -0.251 4.251 23 H 0.079 0.921 24 C -0.046 4.046 25 N -0.935 5.935 26 Si 0.957 3.043 27 H -0.278 1.278 28 H -0.303 1.303 29 H -0.274 1.274 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.407 0.593 34 H 0.127 0.873 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.154 0.846 42 H 0.131 0.869 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.062 0.938 47 H -0.004 1.004 48 H 0.055 0.945 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 -14.217 13.064 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 H 0.050 0.950 4 C 0.035 3.965 5 H 0.098 0.902 6 N -0.342 5.342 7 C 0.341 3.659 8 O -0.466 6.466 9 C -0.158 4.158 10 C -0.103 4.103 11 C -0.151 4.151 12 C -0.026 4.026 13 C -0.149 4.149 14 C -0.213 4.213 15 C -0.200 4.200 16 C -0.140 4.140 17 C -0.085 4.085 18 C -0.154 4.154 19 C -0.165 4.165 20 C 0.055 3.945 21 N -0.320 5.320 22 C -0.381 4.381 23 H 0.096 0.904 24 C -0.241 4.241 25 N -0.581 5.581 26 Si 0.786 3.214 27 H -0.204 1.204 28 H -0.230 1.230 29 H -0.200 1.200 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.245 0.755 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.172 0.828 42 H 0.149 0.851 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.014 0.986 48 H 0.074 0.926 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.131 -13.781 13.573 20.615 hybrid contribution -0.033 0.020 -1.552 1.552 sum -7.164 -13.762 12.021 19.627 Atomic orbital electron populations 1.21701 0.94283 1.01638 1.00892 1.20834 0.94489 0.93459 0.86155 0.94950 1.21372 0.92938 0.83370 0.98785 0.90219 1.45886 1.61043 1.18201 1.09077 1.18633 0.78116 0.85912 0.83202 1.90685 1.52345 1.68180 1.35379 1.19956 1.05423 0.94703 0.95739 1.21434 0.96026 0.95544 0.97255 1.21200 1.00646 0.94467 0.98768 1.19622 0.95354 0.94867 0.92801 1.21171 0.99732 0.93562 1.00450 1.23195 1.02585 1.01150 0.94336 1.23109 0.90120 1.03487 1.03258 1.21167 0.99183 0.94334 0.99289 1.21321 0.95846 0.94704 0.96664 1.21722 0.95486 1.00600 0.97571 1.21955 0.99735 0.98926 0.95900 1.20563 0.83352 0.95783 0.94829 1.44321 1.02939 1.65283 1.19433 1.19429 0.95596 1.36594 0.86434 0.90354 1.25772 0.98896 1.00716 0.98765 1.70176 1.25863 1.45483 1.16554 0.85495 0.78295 0.79382 0.78185 1.20361 1.22962 1.20033 0.91833 0.93234 0.92674 0.75502 0.85548 0.83961 0.85190 0.88574 0.86912 0.86721 0.89165 0.82824 0.85070 0.92763 0.91262 0.93167 0.91959 0.98600 0.92646 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 7.72 71.98 0.56 -3.93 16 2 C 0.16 6.13 3.20 44.98 0.14 6.27 16 3 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 4 C 0.14 5.02 2.32 45.07 0.10 5.12 16 5 H 0.08 2.82 7.58 -2.38 -0.02 2.80 16 6 N -0.69 -23.40 3.42 -445.03 -1.52 -24.92 16 7 C 0.55 18.88 7.74 86.79 0.67 19.56 16 8 O -0.58 -22.95 16.01 -3.87 -0.06 -23.01 16 9 C -0.16 -4.49 5.87 -20.09 -0.12 -4.61 16 10 C -0.08 -2.17 9.54 22.53 0.21 -1.96 16 11 C -0.13 -2.87 9.28 22.23 0.21 -2.66 16 12 C -0.03 -0.50 5.62 -19.81 -0.11 -0.61 16 13 C -0.13 -1.80 6.03 -11.54 -0.07 -1.87 16 14 C -0.18 -2.16 9.86 30.62 0.30 -1.86 16 15 C -0.16 -1.96 10.16 30.62 0.31 -1.65 16 16 C -0.12 -2.39 9.72 22.23 0.22 -2.18 16 17 C -0.07 -1.68 9.60 22.53 0.22 -1.46 16 18 C -0.12 -4.06 5.58 30.63 0.17 -3.89 16 19 C -0.13 -4.77 5.93 30.67 0.18 -4.59 16 20 C 0.18 8.35 5.28 86.36 0.46 8.80 16 21 N -0.60 -27.29 2.64 -675.24 -1.79 -29.08 16 22 C -0.25 -12.38 8.58 84.03 0.72 -11.66 16 23 H 0.08 3.68 6.23 -2.91 -0.02 3.66 16 24 C -0.05 -2.40 4.94 84.86 0.42 -1.98 16 25 N -0.93 -53.11 11.23 21.65 0.24 -52.87 16 26 Si 0.96 42.42 29.58 68.60 2.03 44.45 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 29 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.88 7.67 -2.39 -0.02 1.86 16 32 H 0.05 1.90 6.37 -2.39 -0.02 1.89 16 33 H 0.41 13.93 5.80 -92.71 -0.54 13.39 16 34 H 0.13 3.33 6.41 -2.91 -0.02 3.31 16 35 H 0.14 2.58 6.00 -2.91 -0.02 2.57 16 36 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.28 6.17 -2.39 -0.01 1.27 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 42 H 0.13 3.33 7.65 -2.91 -0.02 3.31 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.05 1.93 7.53 -2.39 -0.02 1.91 16 46 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 47 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 48 H 0.06 2.90 6.14 -2.39 -0.01 2.89 16 49 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -61.92 382.52 3.91 -58.01 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.42 Total: 32.57 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 4.59 Total: -5.15 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.07 Total: -106.87 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.06 Total: -23.01 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -61.92 3.91 -58.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994450390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.061 kcal (2) G-P(sol) polarization free energy of solvation -61.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds