Wall clock time and date at job start Sat Apr 11 2020 02:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.58196 * 2 1 4 4 C 1.53190 * 109.58992 * 239.58202 * 2 1 3 5 5 H 1.08999 * 109.49987 * 65.58634 * 4 2 1 6 6 N 1.46499 * 109.49367 * 305.52522 * 4 2 1 7 7 C 1.34777 * 120.00293 * 155.00126 * 6 4 2 8 8 O 1.21555 * 119.99933 * 359.97438 * 7 6 4 9 9 C 1.47844 * 120.00461 * 179.97438 * 7 6 4 10 10 C 1.39595 * 120.14175 * 0.02562 * 9 7 6 11 11 C 1.37937 * 119.85235 * 179.97438 * 10 9 7 12 12 C 1.38382 * 120.14610 * 0.02562 * 11 10 9 13 13 C 1.38334 * 120.28943 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.92253 * 180.02562 * 13 12 11 15 15 C 1.52997 * 117.50016 * 8.74438 * 14 13 12 16 16 C 1.52998 * 117.50050 * 300.07894 * 14 13 12 17 17 C 1.37982 * 120.14720 * 359.73748 * 13 12 11 18 18 C 1.53040 * 109.31644 * 185.57406 * 4 2 1 19 19 C 1.53045 * 109.53717 * 61.35924 * 18 4 2 20 20 C 1.53622 * 109.24416 * 298.51402 * 19 18 4 21 21 N 1.46926 * 109.58845 * 120.28431 * 2 1 3 22 22 C 1.36925 * 120.63067 * 353.37868 * 21 2 1 23 23 H 1.08004 * 120.00231 * 32.87650 * 22 21 2 24 24 C 1.38808 * 120.00136 * 212.87315 * 22 21 2 25 25 N 1.31621 * 120.00746 * 197.78854 * 24 22 21 26 26 Si 1.86801 * 120.00017 * 17.79108 * 24 22 21 27 27 H 1.48503 * 109.47176 * 270.00242 * 26 24 22 28 28 H 1.48496 * 109.47633 * 150.00055 * 26 24 22 29 29 H 1.48498 * 109.47087 * 29.99643 * 26 24 22 30 30 H 1.08997 * 109.47326 * 299.70952 * 1 2 3 31 31 H 1.08994 * 109.47368 * 59.71428 * 1 2 3 32 32 H 1.09001 * 109.46677 * 179.71348 * 1 2 3 33 33 H 0.96998 * 120.00195 * 334.99667 * 6 4 2 34 34 H 1.08004 * 120.07615 * 359.95326 * 10 9 7 35 35 H 1.08005 * 119.92724 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.85494 * 179.97438 * 12 11 10 37 37 H 1.09008 * 115.54912 * 154.41690 * 14 13 12 38 38 H 1.08990 * 117.50138 * 359.97438 * 15 14 13 39 39 H 1.09006 * 117.49660 * 145.02426 * 15 14 13 40 40 H 1.08994 * 117.50076 * 214.98346 * 16 14 13 41 41 H 1.09004 * 117.49806 * 359.97438 * 16 14 13 42 42 H 1.07998 * 120.07272 * 180.25515 * 17 13 12 43 43 H 1.08998 * 109.46351 * 181.38091 * 18 4 2 44 44 H 1.09002 * 109.45967 * 301.34318 * 18 4 2 45 45 H 1.09006 * 109.49522 * 58.58705 * 19 18 4 46 46 H 1.08992 * 109.49807 * 178.68716 * 19 18 4 47 47 H 1.08994 * 109.73908 * 295.12409 * 20 19 18 48 48 H 1.08996 * 109.66968 * 174.54373 * 20 19 18 49 49 H 0.97005 * 119.99036 * 355.09757 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7307 -1.2446 5 1 1.7655 -0.1695 -2.1367 6 7 1.4515 -2.0694 -1.3047 7 6 1.3285 -2.6993 -2.4899 8 8 1.7085 -2.1565 -3.5090 9 6 0.7315 -4.0505 -2.5505 10 6 0.2937 -4.6764 -1.3821 11 6 -0.2629 -5.9369 -1.4457 12 6 -0.3872 -6.5811 -2.6641 13 6 0.0447 -5.9663 -3.8256 14 6 -0.0952 -6.6752 -5.1482 15 6 -0.9025 -7.9746 -5.1713 16 6 0.6214 -8.0173 -5.3097 17 6 0.5978 -4.7032 -3.7767 18 6 3.5676 -0.8491 -1.1692 19 6 3.9571 -1.6654 0.0654 20 6 3.4658 -0.9403 1.3275 21 7 2.0226 -0.6981 1.1953 22 6 1.1539 -1.1101 2.1702 23 1 0.1549 -1.4242 1.9058 24 6 1.5570 -1.1241 3.4984 25 7 0.8840 -1.8287 4.3832 26 14 3.0549 -0.1428 4.0302 27 1 4.2692 -0.9894 3.9113 28 1 2.8887 0.2888 5.4413 29 1 3.1979 1.0525 3.1606 30 1 -0.3634 0.5093 0.8925 31 1 -0.3634 0.5182 -0.8873 32 1 -0.3633 -1.0277 -0.0051 33 1 1.1480 -2.5025 -0.4916 34 1 0.3908 -4.1751 -0.4304 35 1 -0.6017 -6.4226 -0.5424 36 1 -0.8233 -7.5681 -2.7084 37 1 -0.1566 -6.0288 -6.0238 38 1 -1.3321 -8.3171 -4.2300 39 1 -1.4947 -8.1834 -6.0624 40 1 1.0311 -8.2541 -6.2915 41 1 1.1945 -8.3873 -4.4595 42 1 0.9308 -4.2226 -4.6848 43 1 3.9379 -1.3470 -2.0653 44 1 4.0062 0.1463 -1.0995 45 1 3.4985 -2.6526 0.0083 46 1 5.0413 -1.7691 0.1057 47 1 3.9877 0.0108 1.4322 48 1 3.6533 -1.5609 2.2036 49 1 0.0662 -2.2806 4.1226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994483829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:14:34 Heat of formation + Delta-G solvation = 30.680996 kcal Electronic energy + Delta-G solvation = -28681.519440 eV Core-core repulsion = 24995.422669 eV Total energy + Delta-G solvation = -3686.096771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.35733 -39.27685 -37.79158 -36.63503 -34.10530 -32.73621 -31.90348 -31.16682 -30.90061 -29.63658 -26.47085 -24.72158 -24.42383 -23.46417 -22.66636 -22.14415 -21.53196 -20.71737 -19.67234 -18.93920 -17.76785 -17.13416 -16.31886 -16.06953 -15.49991 -15.13234 -14.96924 -14.88656 -14.39014 -14.24736 -13.89200 -13.68877 -13.63497 -13.41651 -13.18731 -12.76391 -12.65668 -12.33678 -12.07759 -11.97466 -11.82838 -11.56341 -11.46884 -11.29822 -11.14732 -10.88916 -10.83212 -10.69055 -10.54514 -10.51082 -10.20694 -9.80280 -9.65094 -9.53961 -9.11423 -9.02783 -8.73340 -8.61660 -8.49176 -7.08761 -6.26761 -3.43976 0.85128 1.25578 2.95506 3.37636 3.48865 3.51055 3.57942 3.66078 3.97706 4.30582 4.53654 4.57905 4.68154 4.74937 4.84049 4.87952 4.96801 5.07949 5.21175 5.25037 5.34373 5.39107 5.45652 5.47995 5.51805 5.54364 5.71048 5.75179 5.76679 5.81312 5.93415 5.94669 6.06291 6.07258 6.25663 6.28257 6.31038 6.32139 6.37488 6.42887 6.44291 6.51472 6.68924 6.72622 6.79277 6.83580 6.89883 7.02750 7.92651 7.99167 8.39831 8.52690 8.99692 9.53418 10.15629 11.08661 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017565 B = 0.003273 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.688229 B = 8551.902329 C = 9267.452002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.160 3.840 3 H 0.044 0.956 4 C 0.133 3.867 5 H 0.080 0.920 6 N -0.696 5.696 7 C 0.553 3.447 8 O -0.553 6.553 9 C -0.125 4.125 10 C -0.086 4.086 11 C -0.121 4.121 12 C -0.101 4.101 13 C -0.066 4.066 14 C -0.116 4.116 15 C -0.177 4.177 16 C -0.170 4.170 17 C -0.057 4.057 18 C -0.122 4.122 19 C -0.132 4.132 20 C 0.125 3.875 21 N -0.601 5.601 22 C -0.346 4.346 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.921 5.921 26 Si 1.065 2.935 27 H -0.294 1.294 28 H -0.302 1.302 29 H -0.285 1.285 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.409 0.591 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.134 0.866 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.026 0.974 48 H 0.073 0.927 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 -8.622 -15.784 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.061 0.939 4 C 0.027 3.973 5 H 0.098 0.902 6 N -0.347 5.347 7 C 0.340 3.660 8 O -0.433 6.433 9 C -0.128 4.128 10 C -0.105 4.105 11 C -0.139 4.139 12 C -0.119 4.119 13 C -0.066 4.066 14 C -0.134 4.134 15 C -0.214 4.214 16 C -0.207 4.207 17 C -0.075 4.075 18 C -0.161 4.161 19 C -0.172 4.172 20 C -0.001 4.001 21 N -0.327 5.327 22 C -0.474 4.474 23 H 0.088 0.912 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.897 3.103 27 H -0.222 1.222 28 H -0.230 1.230 29 H -0.211 1.211 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.152 0.848 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.091 0.909 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.138 -7.861 -15.158 17.075 hybrid contribution -1.047 -0.535 -0.829 1.438 sum -0.909 -8.395 -15.987 18.080 Atomic orbital electron populations 1.21752 0.95142 1.01603 1.00552 1.20775 0.93844 0.93818 0.86311 0.93894 1.21534 0.92789 0.83127 0.99879 0.90219 1.45949 1.61205 1.18462 1.09057 1.18260 0.78727 0.85182 0.83876 1.90715 1.50862 1.67317 1.34361 1.20028 1.03097 0.95357 0.94320 1.21482 0.96014 0.95178 0.97831 1.21099 0.99840 0.95041 0.97921 1.21201 0.98779 0.99898 0.92040 1.19044 0.99731 0.94322 0.93482 1.21011 1.05948 0.90176 0.96221 1.23086 0.94190 1.00575 1.03567 1.23048 0.94911 0.99334 1.03378 1.21004 0.95811 0.93299 0.97435 1.21782 0.95619 1.00473 0.98183 1.22034 0.99261 0.99753 0.96138 1.21473 0.85109 0.97060 0.96431 1.44482 1.02059 1.65736 1.20389 1.20179 0.97941 1.42542 0.86764 0.91198 1.26236 1.04604 0.98634 0.91792 1.70923 1.17329 1.30388 1.37346 0.83746 0.74959 0.76697 0.74861 1.22249 1.22964 1.21130 0.91618 0.94065 0.92836 0.75295 0.85104 0.85269 0.85751 0.86800 0.88318 0.88417 0.88426 0.88513 0.84844 0.92530 0.91665 0.92101 0.92900 0.95583 0.90853 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.76 37.16 0.29 -2.12 16 2 C 0.16 3.00 3.20 -67.60 -0.22 2.79 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.13 2.29 2.33 -67.81 -0.16 2.13 16 5 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 6 N -0.70 -11.78 3.40 -54.64 -0.19 -11.96 16 7 C 0.55 9.46 7.74 -12.33 -0.10 9.36 16 8 O -0.55 -10.75 16.01 5.32 0.09 -10.67 16 9 C -0.13 -1.86 5.87 -104.97 -0.62 -2.48 16 10 C -0.09 -1.18 9.54 -39.19 -0.37 -1.55 16 11 C -0.12 -1.42 10.03 -39.64 -0.40 -1.81 16 12 C -0.10 -1.09 9.29 -39.49 -0.37 -1.45 16 13 C -0.07 -0.75 5.61 -104.68 -0.59 -1.34 16 14 C -0.12 -1.06 6.03 -91.77 -0.55 -1.61 16 15 C -0.18 -1.30 9.86 -26.69 -0.26 -1.56 16 16 C -0.17 -1.32 10.17 -26.69 -0.27 -1.59 16 17 C -0.06 -0.77 9.28 -39.19 -0.36 -1.13 16 18 C -0.12 -2.03 5.58 -26.69 -0.15 -2.18 16 19 C -0.13 -2.33 5.94 -26.39 -0.16 -2.48 16 20 C 0.12 2.56 4.23 -3.48 -0.01 2.54 16 21 N -0.60 -13.06 2.35 -164.51 -0.39 -13.45 16 22 C -0.35 -8.72 8.79 -15.07 -0.13 -8.85 16 23 H 0.07 1.85 6.53 -52.48 -0.34 1.51 16 24 C -0.01 -0.29 5.24 -17.43 -0.09 -0.38 16 25 N -0.92 -27.04 13.70 55.49 0.76 -26.28 16 26 Si 1.07 25.46 24.75 -169.99 -4.21 21.26 16 27 H -0.29 -6.68 6.60 56.52 0.37 -6.31 16 28 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.29 -6.55 6.80 56.52 0.38 -6.17 16 30 H 0.06 1.29 7.65 -51.93 -0.40 0.89 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.99 6.38 -51.93 -0.33 0.66 16 33 H 0.41 7.15 5.81 -40.82 -0.24 6.91 16 34 H 0.13 1.83 6.41 -52.48 -0.34 1.50 16 35 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.12 1.05 6.01 -52.49 -0.32 0.73 16 37 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 38 H 0.10 0.68 6.17 -51.93 -0.32 0.36 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.13 1.80 7.65 -52.49 -0.40 1.40 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.11 7.53 -51.93 -0.39 0.72 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.03 0.53 7.07 -51.93 -0.37 0.16 16 48 H 0.07 1.64 4.94 -51.93 -0.26 1.38 16 49 H 0.26 7.62 8.73 -40.82 -0.36 7.26 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -29.61 377.00 -10.29 -39.90 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.52 Total: 9.23 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -4.52 Total: -13.71 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.19 Total: -51.69 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -4.21 Total: 21.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.61 -10.29 -39.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994483829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.577 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds