Wall clock time and date at job start Sat Apr 11 2020 02:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.58196 * 2 1 4 4 C 1.53190 * 109.58992 * 239.58202 * 2 1 3 5 5 H 1.08999 * 109.49987 * 65.58634 * 4 2 1 6 6 N 1.46499 * 109.49367 * 305.52522 * 4 2 1 7 7 C 1.34777 * 120.00293 * 155.00126 * 6 4 2 8 8 O 1.21555 * 119.99933 * 359.97438 * 7 6 4 9 9 C 1.47844 * 120.00461 * 179.97438 * 7 6 4 10 10 C 1.39595 * 120.14175 * 0.02562 * 9 7 6 11 11 C 1.37937 * 119.85235 * 179.97438 * 10 9 7 12 12 C 1.38382 * 120.14610 * 0.02562 * 11 10 9 13 13 C 1.38334 * 120.28943 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.92253 * 180.02562 * 13 12 11 15 15 C 1.52997 * 117.50016 * 8.74438 * 14 13 12 16 16 C 1.52998 * 117.50050 * 300.07894 * 14 13 12 17 17 C 1.37982 * 120.14720 * 359.73748 * 13 12 11 18 18 C 1.53040 * 109.31644 * 185.57406 * 4 2 1 19 19 C 1.53045 * 109.53717 * 61.35924 * 18 4 2 20 20 C 1.53622 * 109.24416 * 298.51402 * 19 18 4 21 21 N 1.46926 * 109.58845 * 120.28431 * 2 1 3 22 22 C 1.36925 * 120.63067 * 353.37868 * 21 2 1 23 23 H 1.08004 * 120.00231 * 32.87650 * 22 21 2 24 24 C 1.38808 * 120.00136 * 212.87315 * 22 21 2 25 25 N 1.31621 * 120.00746 * 197.78854 * 24 22 21 26 26 Si 1.86801 * 120.00017 * 17.79108 * 24 22 21 27 27 H 1.48503 * 109.47176 * 270.00242 * 26 24 22 28 28 H 1.48496 * 109.47633 * 150.00055 * 26 24 22 29 29 H 1.48498 * 109.47087 * 29.99643 * 26 24 22 30 30 H 1.08997 * 109.47326 * 299.70952 * 1 2 3 31 31 H 1.08994 * 109.47368 * 59.71428 * 1 2 3 32 32 H 1.09001 * 109.46677 * 179.71348 * 1 2 3 33 33 H 0.96998 * 120.00195 * 334.99667 * 6 4 2 34 34 H 1.08004 * 120.07615 * 359.95326 * 10 9 7 35 35 H 1.08005 * 119.92724 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.85494 * 179.97438 * 12 11 10 37 37 H 1.09008 * 115.54912 * 154.41690 * 14 13 12 38 38 H 1.08990 * 117.50138 * 359.97438 * 15 14 13 39 39 H 1.09006 * 117.49660 * 145.02426 * 15 14 13 40 40 H 1.08994 * 117.50076 * 214.98346 * 16 14 13 41 41 H 1.09004 * 117.49806 * 359.97438 * 16 14 13 42 42 H 1.07998 * 120.07272 * 180.25515 * 17 13 12 43 43 H 1.08998 * 109.46351 * 181.38091 * 18 4 2 44 44 H 1.09002 * 109.45967 * 301.34318 * 18 4 2 45 45 H 1.09006 * 109.49522 * 58.58705 * 19 18 4 46 46 H 1.08992 * 109.49807 * 178.68716 * 19 18 4 47 47 H 1.08994 * 109.73908 * 295.12409 * 20 19 18 48 48 H 1.08996 * 109.66968 * 174.54373 * 20 19 18 49 49 H 0.97005 * 119.99036 * 355.09757 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7307 -1.2446 5 1 1.7655 -0.1695 -2.1367 6 7 1.4515 -2.0694 -1.3047 7 6 1.3285 -2.6993 -2.4899 8 8 1.7085 -2.1565 -3.5090 9 6 0.7315 -4.0505 -2.5505 10 6 0.2937 -4.6764 -1.3821 11 6 -0.2629 -5.9369 -1.4457 12 6 -0.3872 -6.5811 -2.6641 13 6 0.0447 -5.9663 -3.8256 14 6 -0.0952 -6.6752 -5.1482 15 6 -0.9025 -7.9746 -5.1713 16 6 0.6214 -8.0173 -5.3097 17 6 0.5978 -4.7032 -3.7767 18 6 3.5676 -0.8491 -1.1692 19 6 3.9571 -1.6654 0.0654 20 6 3.4658 -0.9403 1.3275 21 7 2.0226 -0.6981 1.1953 22 6 1.1539 -1.1101 2.1702 23 1 0.1549 -1.4242 1.9058 24 6 1.5570 -1.1241 3.4984 25 7 0.8840 -1.8287 4.3832 26 14 3.0549 -0.1428 4.0302 27 1 4.2692 -0.9894 3.9113 28 1 2.8887 0.2888 5.4413 29 1 3.1979 1.0525 3.1606 30 1 -0.3634 0.5093 0.8925 31 1 -0.3634 0.5182 -0.8873 32 1 -0.3633 -1.0277 -0.0051 33 1 1.1480 -2.5025 -0.4916 34 1 0.3908 -4.1751 -0.4304 35 1 -0.6017 -6.4226 -0.5424 36 1 -0.8233 -7.5681 -2.7084 37 1 -0.1566 -6.0288 -6.0238 38 1 -1.3321 -8.3171 -4.2300 39 1 -1.4947 -8.1834 -6.0624 40 1 1.0311 -8.2541 -6.2915 41 1 1.1945 -8.3873 -4.4595 42 1 0.9308 -4.2226 -4.6848 43 1 3.9379 -1.3470 -2.0653 44 1 4.0062 0.1463 -1.0995 45 1 3.4985 -2.6526 0.0083 46 1 5.0413 -1.7691 0.1057 47 1 3.9877 0.0108 1.4322 48 1 3.6533 -1.5609 2.2036 49 1 0.0662 -2.2806 4.1226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994483829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:14:33 Heat of formation + Delta-G solvation = 15.768461 kcal Electronic energy + Delta-G solvation = -28682.166096 eV Core-core repulsion = 24995.422669 eV Total energy + Delta-G solvation = -3686.743427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58585 -40.40782 -39.17766 -37.48661 -35.75040 -34.32023 -33.53612 -32.43571 -31.99507 -30.98992 -27.99894 -26.43655 -25.49600 -24.58551 -23.72760 -23.19300 -22.59807 -22.17427 -20.92962 -20.43807 -19.08278 -18.74027 -17.42610 -17.13349 -16.75599 -16.56292 -16.33554 -16.20761 -15.74871 -15.38741 -15.29045 -15.04188 -14.89265 -14.73203 -14.62117 -14.21446 -13.83380 -13.70898 -13.46938 -13.19820 -13.09823 -12.86933 -12.80814 -12.41537 -12.22697 -12.17393 -12.07471 -12.01711 -11.79079 -11.64631 -11.53595 -11.34670 -11.23595 -11.07257 -10.97699 -10.52532 -10.15775 -9.89766 -9.60291 -9.01543 -8.33760 -5.49273 -0.20115 0.28410 1.46596 1.59203 1.75723 1.80027 2.19376 2.58769 2.68797 3.12600 3.16498 3.33099 3.51686 3.65682 3.87693 3.88693 3.96077 3.97066 4.05194 4.08326 4.13647 4.14531 4.22847 4.30830 4.44039 4.49120 4.54034 4.58420 4.77408 4.80619 4.84511 4.85511 4.87175 4.88123 4.97837 5.04694 5.06047 5.10966 5.15886 5.22299 5.25464 5.29520 5.34544 5.36906 5.38926 5.51519 5.59764 5.85849 5.94984 6.36628 6.54500 6.99043 7.16287 7.61434 8.17344 8.97577 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017565 B = 0.003273 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.688229 B = 8551.902329 C = 9267.452002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.055 0.945 4 C 0.137 3.863 5 H 0.083 0.917 6 N -0.695 5.695 7 C 0.553 3.447 8 O -0.580 6.580 9 C -0.144 4.144 10 C -0.099 4.099 11 C -0.121 4.121 12 C -0.093 4.093 13 C -0.061 4.061 14 C -0.137 4.137 15 C -0.164 4.164 16 C -0.166 4.166 17 C -0.069 4.069 18 C -0.116 4.116 19 C -0.123 4.123 20 C 0.119 3.881 21 N -0.611 5.611 22 C -0.313 4.313 23 H 0.049 0.951 24 C -0.066 4.066 25 N -0.962 5.962 26 Si 1.099 2.901 27 H -0.276 1.276 28 H -0.317 1.317 29 H -0.268 1.268 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.406 0.594 34 H 0.119 0.881 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.127 0.873 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.039 0.961 48 H 0.054 0.946 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.422 -9.524 -17.749 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.073 0.927 4 C 0.031 3.969 5 H 0.101 0.899 6 N -0.345 5.345 7 C 0.342 3.658 8 O -0.462 6.462 9 C -0.147 4.147 10 C -0.117 4.117 11 C -0.139 4.139 12 C -0.111 4.111 13 C -0.061 4.061 14 C -0.155 4.155 15 C -0.201 4.201 16 C -0.203 4.203 17 C -0.088 4.088 18 C -0.155 4.155 19 C -0.162 4.162 20 C -0.006 4.006 21 N -0.337 5.337 22 C -0.443 4.443 23 H 0.067 0.933 24 C -0.261 4.261 25 N -0.605 5.605 26 Si 0.928 3.072 27 H -0.203 1.203 28 H -0.246 1.246 29 H -0.193 1.193 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.243 0.757 34 H 0.137 0.863 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.145 0.855 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.057 0.943 48 H 0.072 0.928 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.808 -8.755 -17.168 19.289 hybrid contribution -1.328 -0.313 -0.352 1.409 sum -0.520 -9.068 -17.520 19.735 Atomic orbital electron populations 1.21675 0.94919 1.01011 1.00786 1.20917 0.94107 0.94228 0.85543 0.92717 1.21463 0.93458 0.83145 0.98879 0.89877 1.45947 1.61161 1.18389 1.08963 1.18584 0.78132 0.85851 0.83283 1.90685 1.52259 1.68221 1.35057 1.19932 1.04725 0.94684 0.95404 1.21445 0.97134 0.96231 0.96935 1.21372 0.98975 0.94205 0.99329 1.21543 0.97537 1.00838 0.91183 1.19310 0.98258 0.93479 0.95037 1.21054 1.08412 0.90979 0.95031 1.23210 0.94043 0.98175 1.04648 1.23125 0.95486 0.97616 1.04028 1.21062 0.96685 0.94379 0.96641 1.21748 0.94874 1.01286 0.97560 1.21920 1.00607 0.98745 0.94954 1.21542 0.84258 0.97611 0.97155 1.44553 1.02386 1.66384 1.20365 1.20062 0.97367 1.39569 0.87292 0.93284 1.27171 1.06809 0.99613 0.92489 1.71023 1.18011 1.33177 1.38298 0.83292 0.73581 0.76461 0.73891 1.20311 1.24617 1.19290 0.93536 0.91570 0.93904 0.75718 0.86278 0.83295 0.82767 0.86594 0.87574 0.86938 0.87179 0.88758 0.85499 0.92487 0.89873 0.93375 0.90442 0.94313 0.92804 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 7.76 71.98 0.56 -3.97 16 2 C 0.16 5.75 3.20 44.97 0.14 5.89 16 3 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 4 C 0.14 4.54 2.33 45.07 0.10 4.64 16 5 H 0.08 2.75 7.58 -2.39 -0.02 2.74 16 6 N -0.69 -23.51 3.40 -445.04 -1.52 -25.02 16 7 C 0.55 19.09 7.74 86.79 0.67 19.76 16 8 O -0.58 -22.65 16.01 -3.89 -0.06 -22.71 16 9 C -0.14 -4.36 5.87 -20.09 -0.12 -4.48 16 10 C -0.10 -2.72 9.54 22.53 0.21 -2.50 16 11 C -0.12 -2.68 10.03 22.23 0.22 -2.45 16 12 C -0.09 -1.79 9.29 22.33 0.21 -1.59 16 13 C -0.06 -1.30 5.61 -19.90 -0.11 -1.41 16 14 C -0.14 -2.22 6.03 -11.54 -0.07 -2.29 16 15 C -0.16 -1.87 9.86 30.62 0.30 -1.57 16 16 C -0.17 -2.12 10.17 30.62 0.31 -1.81 16 17 C -0.07 -1.85 9.28 22.53 0.21 -1.64 16 18 C -0.12 -3.60 5.58 30.62 0.17 -3.43 16 19 C -0.12 -4.07 5.94 30.82 0.18 -3.89 16 20 C 0.12 4.67 4.23 86.51 0.37 5.04 16 21 N -0.61 -26.09 2.35 -674.40 -1.58 -27.67 16 22 C -0.31 -16.01 8.79 84.03 0.74 -15.27 16 23 H 0.05 2.69 6.53 -2.91 -0.02 2.68 16 24 C -0.07 -3.63 5.24 84.86 0.44 -3.18 16 25 N -0.96 -58.35 13.70 21.65 0.30 -58.05 16 26 Si 1.10 51.37 24.75 68.60 1.70 53.06 16 27 H -0.28 -11.97 6.60 99.48 0.66 -11.32 16 28 H -0.32 -15.54 7.11 99.48 0.71 -14.83 16 29 H -0.27 -11.59 6.80 99.48 0.68 -10.92 16 30 H 0.05 1.82 7.65 -2.39 -0.02 1.80 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.60 6.38 -2.39 -0.02 1.59 16 33 H 0.41 14.45 5.81 -92.71 -0.54 13.92 16 34 H 0.12 3.49 6.41 -2.91 -0.02 3.47 16 35 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.15 2.03 6.01 -2.91 -0.02 2.01 16 37 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.11 1.05 6.17 -2.39 -0.01 1.04 16 39 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.13 3.50 7.65 -2.91 -0.02 3.48 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.05 1.71 7.53 -2.38 -0.02 1.69 16 46 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.04 1.45 7.07 -2.39 -0.02 1.43 16 48 H 0.05 2.34 4.94 -2.39 -0.01 2.33 16 49 H 0.25 15.14 8.73 -92.70 -0.81 14.33 16 Total: -1.00 -64.87 377.00 3.69 -61.18 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.30 Total: 33.35 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.55 Total: -14.14 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -2.80 Total: -110.74 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.06 Total: -22.71 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 1.70 Total: 53.06 kcal Total: -64.87 3.69 -61.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994483829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.952 kcal (2) G-P(sol) polarization free energy of solvation -64.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds