Wall clock time and date at job start Sat Apr 11 2020 02:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99739 * 2 1 4 4 H 1.48494 * 109.46951 * 274.98179 * 3 2 1 5 5 H 1.48495 * 109.47382 * 34.98825 * 3 2 1 6 6 H 1.48504 * 109.46810 * 154.98702 * 3 2 1 7 7 C 1.38814 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99690 * 185.06643 * 7 2 1 9 9 N 1.36935 * 120.00191 * 5.06968 * 7 2 1 10 10 C 1.47575 * 134.49130 * 173.48095 * 9 7 2 11 11 C 1.53949 * 86.11931 * 155.35564 * 10 9 7 12 12 C 1.52995 * 113.74478 * 137.95070 * 11 10 9 13 13 N 1.46501 * 109.47085 * 176.92717 * 12 11 10 14 14 C 1.34772 * 119.99653 * 180.02562 * 13 12 11 15 15 O 1.21517 * 120.00738 * 359.97438 * 14 13 12 16 16 C 1.48174 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.39310 * 119.72881 * 180.27539 * 16 14 13 18 18 C 1.38587 * 119.06107 * 180.27205 * 17 16 14 19 19 C 1.38628 * 118.48576 * 359.45377 * 18 17 16 20 20 C 1.38557 * 119.35442 * 0.27845 * 19 18 17 21 21 C 1.50703 * 119.54705 * 179.97438 * 20 19 18 22 22 F 1.39904 * 109.46718 * 90.00511 * 21 20 19 23 23 F 1.39900 * 109.47085 * 209.99894 * 21 20 19 24 24 F 1.39896 * 109.47343 * 330.00425 * 21 20 19 25 25 N 1.31520 * 120.90119 * 0.02562 * 20 19 18 26 26 C 1.47808 * 134.45640 * 353.34021 * 9 7 2 27 27 H 0.97001 * 120.00018 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.77771 * 41.05149 * 10 9 7 29 29 H 1.09003 * 113.76874 * 269.65507 * 10 9 7 30 30 H 1.09001 * 113.74140 * 269.15531 * 11 10 9 31 31 H 1.08996 * 109.47295 * 56.92208 * 12 11 10 32 32 H 1.09001 * 109.47359 * 296.92550 * 12 11 10 33 33 H 0.96997 * 119.99801 * 359.97438 * 13 12 11 34 34 H 1.07999 * 120.46439 * 0.02997 * 17 16 14 35 35 H 1.08002 * 120.75806 * 179.73349 * 18 17 16 36 36 H 1.08003 * 120.32151 * 180.29551 * 19 18 17 37 37 H 1.09001 * 113.77174 * 90.38445 * 26 9 7 38 38 H 1.09001 * 113.83782 * 318.92332 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0871 -1.2039 0.0831 9 7 1.3296 -2.3858 -0.1037 10 6 1.7287 -3.7985 -0.2551 11 6 0.3710 -4.1417 0.3843 12 6 -0.3479 -5.3131 -0.2877 13 7 -1.5875 -5.6056 0.4363 14 6 -2.3899 -6.6059 0.0218 15 8 -2.0856 -7.2650 -0.9527 16 6 -3.6439 -6.9014 0.7536 17 6 -4.4663 -7.9404 0.3237 18 6 -5.6388 -8.2010 1.0151 19 6 -5.9424 -7.4205 2.1198 20 6 -5.0752 -6.4069 2.4943 21 6 -5.4013 -5.5553 3.6942 22 9 -4.8506 -6.1361 4.8416 23 9 -4.8659 -4.2750 3.5167 24 9 -6.7898 -5.4644 3.8380 25 7 -3.9718 -6.1772 1.8164 26 6 -0.1001 -2.7610 -0.1072 27 1 -0.4850 0.8401 -0.0004 28 1 2.5861 -4.0808 0.3560 29 1 1.8197 -4.1206 -1.2924 30 1 0.4075 -4.2320 1.4700 31 1 0.2971 -6.1917 -0.2736 32 1 -0.5828 -5.0516 -1.3195 33 1 -1.8303 -5.0797 1.2143 34 1 -4.1959 -8.5318 -0.5385 35 1 -6.2987 -8.9971 0.7031 36 1 -6.8461 -7.6009 2.6831 37 1 -0.5475 -2.7777 -1.1010 38 1 -0.7002 -2.2164 0.6217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032065942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:15:17 Heat of formation + Delta-G solvation = -112.090564 kcal Electronic energy + Delta-G solvation = -27283.032723 eV Core-core repulsion = 22711.796072 eV Total energy + Delta-G solvation = -4571.236650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.24459 -48.77350 -48.71475 -41.91859 -40.43434 -39.52470 -35.90520 -34.30981 -33.90022 -33.43544 -30.60841 -28.07117 -27.68022 -26.57075 -25.70622 -23.92505 -23.51081 -21.97861 -20.93313 -19.75091 -19.62968 -19.57763 -18.75855 -18.52400 -17.45809 -17.25470 -17.00650 -16.63140 -16.57555 -15.95706 -15.69487 -15.60599 -15.49851 -15.15190 -15.13518 -14.87054 -14.86073 -14.84756 -14.61039 -14.34645 -13.99138 -13.82339 -13.32975 -13.13189 -13.11506 -12.89480 -12.55675 -12.24714 -11.87533 -11.67176 -11.54326 -11.26622 -11.23786 -10.88340 -10.85401 -10.67698 -10.11678 -8.91821 -7.92773 -5.25362 -0.68699 -0.22356 1.30208 1.44405 1.46576 1.47995 1.55516 1.95916 2.39280 2.45847 2.46865 2.73806 3.22152 3.28077 3.28337 3.39685 3.66193 3.70272 3.77013 3.82879 4.03229 4.09855 4.24729 4.33482 4.57190 4.74769 4.79717 4.82299 4.85584 4.88892 5.07717 5.24334 5.24984 5.30785 5.52703 5.62427 5.92348 6.12420 6.46554 6.90577 6.99530 7.59777 8.56113 9.24940 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.002916 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.349231 B = 9599.996752 C =11140.470143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.645 5.645 10 C 0.129 3.871 11 C -0.119 4.119 12 C 0.140 3.860 13 N -0.700 5.700 14 C 0.567 3.433 15 O -0.560 6.560 16 C 0.065 3.935 17 C -0.080 4.080 18 C -0.056 4.056 19 C -0.090 4.090 20 C 0.018 3.982 21 C 0.524 3.476 22 F -0.173 7.173 23 F -0.178 7.178 24 F -0.162 7.162 25 N -0.446 5.446 26 C 0.168 3.832 27 H 0.248 0.752 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.171 0.829 35 H 0.205 0.795 36 H 0.188 0.812 37 H 0.014 0.986 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.217 -21.475 5.959 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.365 4.365 8 H 0.103 0.897 9 N -0.372 5.372 10 C 0.004 3.996 11 C -0.139 4.139 12 C 0.016 3.984 13 N -0.349 5.349 14 C 0.352 3.648 15 O -0.439 6.439 16 C -0.074 4.074 17 C -0.100 4.100 18 C -0.081 4.081 19 C -0.110 4.110 20 C -0.124 4.124 21 C 0.469 3.531 22 F -0.154 7.154 23 F -0.159 7.159 24 F -0.144 7.144 25 N -0.157 5.157 26 C 0.043 3.957 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.251 0.749 34 H 0.189 0.811 35 H 0.222 0.778 36 H 0.206 0.794 37 H 0.032 0.968 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.319 -20.883 5.573 26.492 hybrid contribution -0.152 1.365 0.174 1.385 sum -15.471 -19.518 5.747 25.560 Atomic orbital electron populations 1.70028 1.06552 1.25623 1.57968 1.25685 0.96560 1.00993 1.02895 0.85064 0.77971 0.79134 0.77228 1.21547 1.22111 1.18943 1.19457 0.91368 0.83485 1.42214 0.89664 1.46364 1.03662 1.02113 1.85067 1.22687 0.95469 0.83225 0.98181 1.23441 0.96693 0.93084 1.00650 1.21343 0.84273 0.97539 0.95280 1.45941 1.22682 1.33709 1.32610 1.18063 0.82958 0.80347 0.83406 1.90770 1.74269 1.51216 1.27635 1.21037 0.96639 0.96042 0.93682 1.22651 0.93156 0.94242 0.99957 1.22217 0.95288 0.98773 0.91836 1.22523 0.99708 0.91637 0.97098 1.21048 0.95051 0.99086 0.97186 1.17917 0.74608 0.78223 0.82386 1.93240 1.85579 1.84139 1.52468 1.93252 1.86183 1.41146 1.95302 1.93220 1.28917 1.96152 1.96084 1.66834 1.16854 1.26388 1.05652 1.22194 0.86957 0.90245 0.96347 0.94308 0.91815 0.93120 0.88221 0.89563 0.92000 0.74945 0.81124 0.77769 0.79438 0.96789 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.12 11.51 21.65 0.25 -58.87 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.98 46.69 29.56 68.60 2.03 48.72 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.24 -13.59 10.70 84.03 0.90 -12.70 16 8 H 0.09 4.65 7.83 -2.91 -0.02 4.62 16 9 N -0.65 -33.75 3.70 -716.09 -2.65 -36.40 16 10 C 0.13 5.10 8.51 86.49 0.74 5.83 16 11 C -0.12 -4.28 3.93 -10.13 -0.04 -4.32 16 12 C 0.14 4.26 5.51 86.38 0.48 4.73 16 13 N -0.70 -20.45 5.55 -465.67 -2.58 -23.04 16 14 C 0.57 16.13 7.81 86.88 0.68 16.81 16 15 O -0.56 -18.10 16.32 -3.77 -0.06 -18.16 16 16 C 0.07 1.49 6.75 41.91 0.28 1.77 16 17 C -0.08 -1.16 9.63 22.61 0.22 -0.94 16 18 C -0.06 -0.40 10.17 22.45 0.23 -0.18 16 19 C -0.09 -0.89 9.44 22.44 0.21 -0.68 16 20 C 0.02 0.34 6.30 42.68 0.27 0.61 16 21 C 0.52 10.50 3.43 71.24 0.24 10.75 16 22 F -0.17 -3.56 17.30 44.97 0.78 -2.78 16 23 F -0.18 -4.65 17.03 44.97 0.77 -3.88 16 24 F -0.16 -2.69 16.44 44.97 0.74 -1.95 16 25 N -0.45 -10.64 9.14 -173.08 -1.58 -12.23 16 26 C 0.17 8.12 6.99 86.44 0.60 8.73 16 27 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 30 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 2.05 7.88 -2.39 -0.02 2.03 16 33 H 0.41 12.05 7.80 -92.71 -0.72 11.33 16 34 H 0.17 2.11 7.64 -2.91 -0.02 2.09 16 35 H 0.21 -0.44 8.06 -2.91 -0.02 -0.47 16 36 H 0.19 0.56 7.60 -2.91 -0.02 0.54 16 37 H 0.01 0.72 7.92 -2.39 -0.02 0.70 16 38 H 0.04 1.95 7.37 -2.39 -0.02 1.93 16 Total: -1.00 -75.64 345.46 3.36 -72.28 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.40 Total: 9.42 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 5.27 Total: 26.88 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -6.56 Total: -130.53 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.06 Total: -18.16 kcal Atomic # 9 Polarization: -10.90 SS G_CDS: 2.28 Total: -8.61 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -75.64 3.36 -72.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032065942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.809 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds