Wall clock time and date at job start Sat Apr 11 2020 02:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99819 * 2 1 4 4 H 1.48498 * 109.47515 * 270.00169 * 3 2 1 5 5 H 1.48505 * 109.47048 * 30.00605 * 3 2 1 6 6 H 1.48501 * 109.47010 * 150.00093 * 3 2 1 7 7 C 1.38811 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99758 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.47577 * 134.49152 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11829 * 155.35987 * 10 9 7 12 12 C 1.53003 * 113.74343 * 137.95154 * 11 10 9 13 13 N 1.46503 * 109.46897 * 176.92783 * 12 11 10 14 14 C 1.34778 * 119.99699 * 179.97438 * 13 12 11 15 15 O 1.21516 * 120.00274 * 0.02562 * 14 13 12 16 16 C 1.48149 * 119.99788 * 179.97438 * 14 13 12 17 17 C 1.39830 * 120.92602 * 0.02562 * 16 14 13 18 18 C 1.38122 * 119.00781 * 179.97438 * 17 16 14 19 19 N 1.31834 * 120.89583 * 359.97438 * 18 17 16 20 20 C 1.31800 * 122.04701 * 0.02659 * 19 18 17 21 21 C 1.38168 * 120.89387 * 359.97438 * 20 19 18 22 22 C 1.50705 * 120.49903 * 179.97438 * 21 20 19 23 23 F 1.39905 * 109.46664 * 359.97438 * 22 21 20 24 24 F 1.39898 * 109.47252 * 120.00015 * 22 21 20 25 25 F 1.39894 * 109.46982 * 240.00414 * 22 21 20 26 26 C 1.47812 * 134.45608 * 359.87220 * 9 7 2 27 27 H 0.96997 * 120.00046 * 359.97438 * 1 2 3 28 28 H 1.09000 * 113.77178 * 41.06072 * 10 9 7 29 29 H 1.09001 * 113.77102 * 269.66117 * 10 9 7 30 30 H 1.09001 * 113.74340 * 269.15879 * 11 10 9 31 31 H 1.08991 * 109.46944 * 56.92732 * 12 11 10 32 32 H 1.08996 * 109.46785 * 296.92557 * 12 11 10 33 33 H 0.96999 * 120.00673 * 0.02562 * 13 12 11 34 34 H 1.08004 * 120.49808 * 0.02562 * 17 16 14 35 35 H 1.08004 * 119.55464 * 180.02562 * 18 17 16 36 36 H 1.07998 * 119.54995 * 179.97438 * 20 19 18 37 37 H 1.09000 * 113.76919 * 90.37896 * 26 9 7 38 38 H 1.09003 * 113.83856 * 318.91535 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.7203 -3.8101 -0.0005 11 6 0.3472 -4.0830 0.6398 12 6 -0.3633 -5.3137 0.0728 13 7 -1.6199 -5.5279 0.7948 14 6 -2.4191 -6.5617 0.4644 15 8 -2.0972 -7.3163 -0.4320 16 6 -3.6896 -6.7787 1.1949 17 6 -4.0787 -5.9227 2.2299 18 6 -5.2715 -6.1616 2.8840 19 7 -6.0382 -7.1787 2.5439 20 6 -5.7090 -8.0092 1.5748 21 6 -4.5333 -7.8443 0.8680 22 6 -4.1655 -8.7995 -0.2381 23 9 -5.1644 -9.7705 -0.3670 24 9 -4.0411 -8.0952 -1.4405 25 9 -2.9493 -9.4200 0.0669 26 6 -0.1057 -2.7571 0.0023 27 1 -0.4850 0.8400 0.0004 28 1 2.5625 -4.0323 0.6547 29 1 1.8321 -4.2350 -0.9981 30 1 0.3596 -4.0639 1.7296 31 1 0.2764 -6.1884 0.1895 32 1 -0.5743 -5.1562 -0.9849 33 1 -1.8772 -4.9254 1.5102 34 1 -3.4562 -5.0867 2.5131 35 1 -5.5808 -5.5058 3.6845 36 1 -6.3673 -8.8296 1.3299 37 1 -0.5317 -2.8718 -0.9944 38 1 -0.7184 -2.1403 0.6598 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032097975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:15:20 Heat of formation + Delta-G solvation = -84.396095 kcal Electronic energy + Delta-G solvation = -27870.825094 eV Core-core repulsion = 23300.789366 eV Total energy + Delta-G solvation = -4570.035728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.13214 -47.71491 -47.46303 -41.11736 -39.42602 -38.04836 -34.79944 -33.55211 -32.56316 -32.07712 -29.05104 -26.95277 -26.00301 -24.95877 -24.76713 -22.97386 -22.04699 -21.06089 -19.54428 -18.80996 -18.42559 -18.41535 -17.76823 -16.96113 -16.78469 -15.80040 -15.72711 -15.62200 -15.18247 -14.97555 -14.48645 -14.35092 -14.30876 -14.21406 -13.97212 -13.83828 -13.65224 -13.58730 -13.37900 -13.21244 -12.98555 -12.45126 -12.11496 -11.50386 -11.41124 -11.07425 -10.79683 -10.70832 -10.56571 -10.54590 -10.08740 -9.95308 -9.87641 -9.84700 -9.52245 -9.05324 -8.86004 -6.94823 -5.83298 -3.15466 -0.00974 0.32437 2.44484 2.54851 2.84141 3.21008 3.35173 3.40318 3.41864 3.52306 3.79516 3.87716 4.08112 4.20076 4.37134 4.39715 4.58840 4.64853 4.99969 5.05080 5.15011 5.19478 5.25945 5.30040 5.56083 5.70691 5.84580 5.90125 6.11862 6.22678 6.38252 6.53458 6.62663 7.12987 7.20251 7.25592 7.29851 7.47165 7.91512 7.93637 8.98527 9.64748 10.52713 11.33934 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.002655 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.145275 B =10543.619247 C =11312.654986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.612 5.612 10 C 0.129 3.871 11 C -0.155 4.155 12 C 0.129 3.871 13 N -0.704 5.704 14 C 0.542 3.458 15 O -0.513 6.513 16 C -0.032 4.032 17 C -0.143 4.143 18 C 0.130 3.870 19 N -0.468 5.468 20 C 0.147 3.853 21 C -0.194 4.194 22 C 0.523 3.477 23 F -0.184 7.184 24 F -0.161 7.161 25 F -0.162 7.162 26 C 0.168 3.832 27 H 0.254 0.746 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.028 0.972 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.054 -16.573 6.131 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.338 5.338 10 C 0.003 3.997 11 C -0.175 4.175 12 C 0.006 3.994 13 N -0.355 5.355 14 C 0.326 3.674 15 O -0.389 6.389 16 C -0.044 4.044 17 C -0.163 4.163 18 C -0.026 4.026 19 N -0.177 5.177 20 C -0.010 4.010 21 C -0.198 4.198 22 C 0.468 3.532 23 F -0.165 7.165 24 F -0.142 7.142 25 F -0.143 7.143 26 C 0.042 3.958 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.238 0.762 34 H 0.173 0.827 35 H 0.192 0.808 36 H 0.193 0.807 37 H 0.046 0.954 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.494 -16.883 5.893 21.814 hybrid contribution 1.169 1.330 -0.420 1.819 sum -11.326 -15.553 5.473 20.003 Atomic orbital electron populations 1.69804 1.05020 1.25373 1.56756 1.24778 0.95700 0.97544 1.02415 0.86115 0.78632 0.83351 0.77633 1.21590 1.21605 1.20604 1.19037 0.90322 0.81974 1.43775 0.90211 1.45972 1.02386 0.99306 1.86175 1.22479 0.93829 0.86479 0.96944 1.23842 0.98431 0.94571 1.00622 1.21592 0.82820 0.98476 0.96512 1.45910 1.22418 1.28901 1.38311 1.18056 0.83356 0.82242 0.83783 1.90885 1.73255 1.44948 1.29794 1.20348 0.94751 0.93846 0.95426 1.22509 0.98735 0.99869 0.95231 1.23136 0.89377 0.93166 0.96951 1.67798 1.32520 1.03653 1.13689 1.22784 0.92195 0.96914 0.89128 1.21246 0.99300 0.98661 1.00606 1.17677 0.74782 0.79014 0.81754 1.93154 1.61682 1.65372 1.96299 1.93261 1.95594 1.78189 1.47141 1.93246 1.44806 1.83405 1.92876 1.22368 0.88225 0.88334 0.96834 0.93645 0.93548 0.94553 0.89100 0.91333 0.90801 0.76175 0.82681 0.80756 0.80670 0.95424 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 11.39 55.49 0.63 -25.89 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.61 -15.11 3.70 -177.71 -0.66 -15.77 16 10 C 0.13 2.48 8.51 -2.97 -0.03 2.45 16 11 C -0.15 -2.55 3.93 -89.70 -0.35 -2.90 16 12 C 0.13 1.84 5.51 -4.04 -0.02 1.81 16 13 N -0.70 -8.58 5.51 -61.15 -0.34 -8.92 16 14 C 0.54 7.24 7.63 -12.19 -0.09 7.14 16 15 O -0.51 -8.48 11.59 5.35 0.06 -8.41 16 16 C -0.03 -0.35 5.88 -104.65 -0.62 -0.97 16 17 C -0.14 -1.10 9.62 -39.03 -0.38 -1.48 16 18 C 0.13 0.92 11.17 -17.59 -0.20 0.73 16 19 N -0.47 -4.18 10.34 -13.30 -0.14 -4.32 16 20 C 0.15 1.32 10.59 -17.59 -0.19 1.13 16 21 C -0.19 -2.11 5.41 -104.06 -0.56 -2.67 16 22 C 0.52 6.53 2.78 36.01 0.10 6.63 16 23 F -0.18 -1.97 16.01 2.25 0.04 -1.93 16 24 F -0.16 -2.35 15.13 2.25 0.03 -2.32 16 25 F -0.16 -2.30 15.13 2.25 0.03 -2.27 16 26 C 0.17 3.65 7.08 -2.85 -0.02 3.63 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16 33 H 0.40 3.93 6.62 -40.82 -0.27 3.66 16 34 H 0.16 0.81 6.54 -52.48 -0.34 0.47 16 35 H 0.18 0.66 8.06 -52.48 -0.42 0.23 16 36 H 0.18 1.18 7.17 -52.49 -0.38 0.80 16 37 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 38 H 0.07 1.72 7.17 -51.93 -0.37 1.35 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -33.43 334.00 -6.77 -40.20 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.84 Total: -0.97 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -2.61 Total: 8.89 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.50 Total: -54.91 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.06 Total: -8.41 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.10 Total: -6.52 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.43 -6.77 -40.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032097975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.196 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds