Wall clock time and date at job start Sat Apr 11 2020 02:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99819 * 2 1 4 4 H 1.48498 * 109.47515 * 270.00169 * 3 2 1 5 5 H 1.48505 * 109.47048 * 30.00605 * 3 2 1 6 6 H 1.48501 * 109.47010 * 150.00093 * 3 2 1 7 7 C 1.38811 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99758 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.47577 * 134.49152 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11829 * 155.35987 * 10 9 7 12 12 C 1.53003 * 113.74343 * 137.95154 * 11 10 9 13 13 N 1.46503 * 109.46897 * 176.92783 * 12 11 10 14 14 C 1.34778 * 119.99699 * 179.97438 * 13 12 11 15 15 O 1.21516 * 120.00274 * 0.02562 * 14 13 12 16 16 C 1.48149 * 119.99788 * 179.97438 * 14 13 12 17 17 C 1.39830 * 120.92602 * 0.02562 * 16 14 13 18 18 C 1.38122 * 119.00781 * 179.97438 * 17 16 14 19 19 N 1.31834 * 120.89583 * 359.97438 * 18 17 16 20 20 C 1.31800 * 122.04701 * 0.02659 * 19 18 17 21 21 C 1.38168 * 120.89387 * 359.97438 * 20 19 18 22 22 C 1.50705 * 120.49903 * 179.97438 * 21 20 19 23 23 F 1.39905 * 109.46664 * 359.97438 * 22 21 20 24 24 F 1.39898 * 109.47252 * 120.00015 * 22 21 20 25 25 F 1.39894 * 109.46982 * 240.00414 * 22 21 20 26 26 C 1.47812 * 134.45608 * 359.87220 * 9 7 2 27 27 H 0.96997 * 120.00046 * 359.97438 * 1 2 3 28 28 H 1.09000 * 113.77178 * 41.06072 * 10 9 7 29 29 H 1.09001 * 113.77102 * 269.66117 * 10 9 7 30 30 H 1.09001 * 113.74340 * 269.15879 * 11 10 9 31 31 H 1.08991 * 109.46944 * 56.92732 * 12 11 10 32 32 H 1.08996 * 109.46785 * 296.92557 * 12 11 10 33 33 H 0.96999 * 120.00673 * 0.02562 * 13 12 11 34 34 H 1.08004 * 120.49808 * 0.02562 * 17 16 14 35 35 H 1.08004 * 119.55464 * 180.02562 * 18 17 16 36 36 H 1.07998 * 119.54995 * 179.97438 * 20 19 18 37 37 H 1.09000 * 113.76919 * 90.37896 * 26 9 7 38 38 H 1.09003 * 113.83856 * 318.91535 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.7203 -3.8101 -0.0005 11 6 0.3472 -4.0830 0.6398 12 6 -0.3633 -5.3137 0.0728 13 7 -1.6199 -5.5279 0.7948 14 6 -2.4191 -6.5617 0.4644 15 8 -2.0972 -7.3163 -0.4320 16 6 -3.6896 -6.7787 1.1949 17 6 -4.0787 -5.9227 2.2299 18 6 -5.2715 -6.1616 2.8840 19 7 -6.0382 -7.1787 2.5439 20 6 -5.7090 -8.0092 1.5748 21 6 -4.5333 -7.8443 0.8680 22 6 -4.1655 -8.7995 -0.2381 23 9 -5.1644 -9.7705 -0.3670 24 9 -4.0411 -8.0952 -1.4405 25 9 -2.9493 -9.4200 0.0669 26 6 -0.1057 -2.7571 0.0023 27 1 -0.4850 0.8400 0.0004 28 1 2.5625 -4.0323 0.6547 29 1 1.8321 -4.2350 -0.9981 30 1 0.3596 -4.0639 1.7296 31 1 0.2764 -6.1884 0.1895 32 1 -0.5743 -5.1562 -0.9849 33 1 -1.8772 -4.9254 1.5102 34 1 -3.4562 -5.0867 2.5131 35 1 -5.5808 -5.5058 3.6845 36 1 -6.3673 -8.8296 1.3299 37 1 -0.5317 -2.8718 -0.9944 38 1 -0.7184 -2.1403 0.6598 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032097975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:15:19 Heat of formation + Delta-G solvation = -106.997500 kcal Electronic energy + Delta-G solvation = -27871.805165 eV Core-core repulsion = 23300.789366 eV Total energy + Delta-G solvation = -4571.015799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.10153 -48.66170 -48.50392 -41.90353 -40.47040 -39.55251 -36.00279 -34.42916 -34.11621 -33.08516 -30.60329 -28.16548 -27.20471 -26.54324 -25.77858 -24.03624 -23.40546 -22.06477 -20.89186 -19.83578 -19.41837 -19.36338 -18.79274 -18.59491 -17.82303 -17.00121 -16.80028 -16.60989 -16.51897 -15.86363 -15.76348 -15.44810 -15.34841 -15.29003 -15.07745 -14.96486 -14.79668 -14.69938 -14.60308 -14.33077 -14.01641 -13.93212 -13.29980 -13.10076 -12.89737 -12.87699 -12.52513 -12.25071 -11.86102 -11.63961 -11.49238 -11.32863 -11.23255 -10.86434 -10.76139 -10.58664 -10.17365 -8.90895 -7.90504 -5.23085 -0.77293 -0.31720 1.46581 1.47951 1.55857 1.56401 1.65308 1.86748 2.46925 2.47901 2.65084 2.97239 3.25700 3.28041 3.32101 3.40693 3.40986 3.50119 3.73407 3.84456 3.97759 4.08335 4.34558 4.44936 4.45779 4.58487 4.67829 4.78119 4.84846 4.88009 5.08575 5.23668 5.27031 5.29743 5.55382 5.65085 5.95179 6.31618 6.57419 6.93573 6.95821 7.61524 8.56798 9.26235 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.002655 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.145275 B =10543.619247 C =11312.654986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.976 3.024 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.645 5.645 10 C 0.125 3.875 11 C -0.113 4.113 12 C 0.142 3.858 13 N -0.696 5.696 14 C 0.540 3.460 15 O -0.550 6.550 16 C -0.051 4.051 17 C -0.131 4.131 18 C 0.140 3.860 19 N -0.479 5.479 20 C 0.150 3.850 21 C -0.208 4.208 22 C 0.519 3.481 23 F -0.175 7.175 24 F -0.178 7.178 25 F -0.176 7.176 26 C 0.164 3.836 27 H 0.248 0.752 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.416 0.584 34 H 0.182 0.818 35 H 0.214 0.786 36 H 0.193 0.807 37 H 0.010 0.990 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 -16.675 8.005 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.364 4.364 8 H 0.100 0.900 9 N -0.372 5.372 10 C 0.000 4.000 11 C -0.133 4.133 12 C 0.018 3.982 13 N -0.348 5.348 14 C 0.326 3.674 15 O -0.429 6.429 16 C -0.063 4.063 17 C -0.151 4.151 18 C -0.017 4.017 19 N -0.187 5.187 20 C -0.006 4.006 21 C -0.212 4.212 22 C 0.464 3.536 23 F -0.157 7.157 24 F -0.160 7.160 25 F -0.157 7.157 26 C 0.039 3.961 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.254 0.746 34 H 0.199 0.801 35 H 0.230 0.770 36 H 0.210 0.790 37 H 0.028 0.972 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.778 -17.013 7.787 22.658 hybrid contribution 1.241 1.323 -0.996 2.069 sum -11.537 -15.691 6.791 20.626 Atomic orbital electron populations 1.69974 1.06261 1.25574 1.58199 1.25573 0.96594 1.00669 1.03008 0.85116 0.77827 0.79322 0.77290 1.21792 1.21852 1.19291 1.19422 0.90851 0.83505 1.42663 0.90036 1.46402 1.03888 1.00644 1.86259 1.22696 0.95832 0.83549 0.97958 1.23415 0.96136 0.92619 1.01121 1.21292 0.83755 0.97615 0.95581 1.45737 1.21670 1.29024 1.38358 1.18422 0.84013 0.81621 0.83341 1.90867 1.74256 1.46257 1.31503 1.20239 0.93942 0.95234 0.96836 1.22825 0.99129 0.99510 0.93624 1.23799 0.88414 0.92561 0.96895 1.67900 1.32993 1.04217 1.13595 1.23028 0.91560 0.97327 0.88667 1.21195 1.00423 0.98804 1.00799 1.17926 0.74500 0.79400 0.81783 1.93159 1.61106 1.65119 1.96289 1.93216 1.95700 1.78622 1.48423 1.93207 1.45868 1.83713 1.92922 1.22302 0.86937 0.90913 0.95944 0.94258 0.91892 0.93743 0.87165 0.90097 0.92522 0.74600 0.80054 0.76960 0.79029 0.97197 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.51 11.39 21.65 0.25 -55.27 16 2 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 3 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.24 -12.95 10.70 84.03 0.90 -12.05 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.65 -31.73 3.70 -716.16 -2.65 -34.38 16 10 C 0.12 4.61 8.51 86.49 0.74 5.35 16 11 C -0.11 -3.55 3.93 -10.14 -0.04 -3.59 16 12 C 0.14 3.83 5.51 86.38 0.48 4.31 16 13 N -0.70 -15.86 5.51 -465.68 -2.57 -18.43 16 14 C 0.54 14.02 7.63 86.88 0.66 14.69 16 15 O -0.55 -18.33 11.59 -3.77 -0.04 -18.37 16 16 C -0.05 -1.04 5.88 -19.88 -0.12 -1.16 16 17 C -0.13 -1.63 9.62 22.63 0.22 -1.41 16 18 C 0.14 1.48 11.17 84.66 0.95 2.42 16 19 N -0.48 -7.24 10.34 -196.01 -2.03 -9.26 16 20 C 0.15 2.45 10.59 84.68 0.90 3.34 16 21 C -0.21 -4.35 5.41 -19.50 -0.11 -4.45 16 22 C 0.52 13.07 2.78 71.24 0.20 13.27 16 23 F -0.18 -3.73 16.01 44.97 0.72 -3.01 16 24 F -0.18 -5.38 15.13 44.97 0.68 -4.70 16 25 F -0.18 -5.08 15.13 44.97 0.68 -4.40 16 26 C 0.16 7.18 7.08 86.44 0.61 7.79 16 27 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 30 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 1.77 7.88 -2.39 -0.02 1.75 16 33 H 0.42 7.10 6.62 -92.71 -0.61 6.49 16 34 H 0.18 1.20 6.54 -2.91 -0.02 1.18 16 35 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 36 H 0.19 2.27 7.17 -2.91 -0.02 2.25 16 37 H 0.01 0.48 7.92 -2.39 -0.02 0.46 16 38 H 0.05 2.37 7.17 -2.39 -0.02 2.35 16 Total: -1.00 -73.89 334.00 3.43 -70.46 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 0.52 Total: 5.27 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: 5.85 Total: 25.33 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -7.00 Total: -117.34 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.04 Total: -18.37 kcal Atomic # 9 Polarization: -14.19 SS G_CDS: 2.08 Total: -12.11 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -73.89 3.43 -70.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032097975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.537 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds