Wall clock time and date at job start Sat Apr 11 2020 02:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48494 * 109.47223 * 270.00306 * 3 2 1 5 5 H 1.48506 * 109.46646 * 30.00030 * 3 2 1 6 6 H 1.48496 * 109.47208 * 149.99674 * 3 2 1 7 7 C 1.38814 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99621 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.49138 * 179.97438 * 9 7 2 11 11 C 1.53940 * 86.11662 * 155.35625 * 10 9 7 12 12 C 1.53004 * 113.73828 * 137.95111 * 11 10 9 13 13 N 1.46499 * 109.47270 * 176.93101 * 12 11 10 14 14 C 1.34771 * 120.00564 * 180.02562 * 13 12 11 15 15 O 1.21523 * 119.99539 * 359.97438 * 14 13 12 16 16 C 1.48168 * 120.00421 * 180.27161 * 14 13 12 17 17 N 1.32741 * 119.71908 * 359.45397 * 16 14 13 18 18 C 1.31503 * 121.63951 * 179.70966 * 17 16 14 19 19 C 1.38606 * 120.89980 * 0.55936 * 18 17 16 20 20 C 1.38583 * 119.34964 * 359.73097 * 19 18 17 21 21 C 1.38626 * 118.49258 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.47164 * 180.02562 * 21 20 19 23 23 F 1.39896 * 109.47113 * 359.97438 * 22 21 20 24 24 F 1.39901 * 109.46645 * 119.98133 * 22 21 20 25 25 F 1.39900 * 109.47215 * 239.97905 * 22 21 20 26 26 C 1.47810 * 134.46102 * 359.86665 * 9 7 2 27 27 H 0.97001 * 119.99688 * 0.02562 * 1 2 3 28 28 H 1.09007 * 113.76612 * 41.06076 * 10 9 7 29 29 H 1.08993 * 113.77288 * 269.66520 * 10 9 7 30 30 H 1.08995 * 113.75047 * 269.15902 * 11 10 9 31 31 H 1.08998 * 109.47202 * 56.92947 * 12 11 10 32 32 H 1.08997 * 109.47419 * 296.92845 * 12 11 10 33 33 H 0.97001 * 120.00074 * 359.97438 * 13 12 11 34 34 H 1.07993 * 119.55159 * 180.28854 * 18 17 16 35 35 H 1.07994 * 120.32188 * 179.74517 * 19 18 17 36 36 H 1.08001 * 120.75093 * 179.97438 * 20 19 18 37 37 H 1.09001 * 113.77024 * 90.37613 * 26 9 7 38 38 H 1.09000 * 113.83093 * 318.91808 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0029 11 6 0.3471 -4.0835 0.6373 12 6 -0.3635 -5.3137 0.0692 13 7 -1.6202 -5.5285 0.7909 14 6 -2.4189 -6.5625 0.4603 15 8 -2.0970 -7.3163 -0.4368 16 6 -3.6928 -6.7762 1.1863 17 7 -4.0367 -5.9523 2.1686 18 6 -5.1608 -6.1035 2.8340 19 6 -6.0283 -7.1434 2.5389 20 6 -5.7053 -8.0303 1.5242 21 6 -4.5168 -7.8429 0.8357 22 6 -4.1217 -8.7804 -0.2762 23 9 -5.1078 -9.7603 -0.4323 24 9 -3.9873 -8.0599 -1.4678 25 9 -2.9033 -9.3911 0.0395 26 6 -0.1058 -2.7571 0.0001 27 1 -0.4850 0.8401 -0.0004 28 1 2.5624 -4.0330 0.6522 29 1 1.8319 -4.2342 -1.0007 30 1 0.3594 -4.0654 1.7270 31 1 0.2762 -6.1886 0.1850 32 1 -0.5745 -5.1554 -0.9884 33 1 -1.8770 -4.9270 1.5073 34 1 -5.4094 -5.4105 3.6241 35 1 -6.9471 -7.2611 3.0941 36 1 -6.3645 -8.8488 1.2756 37 1 -0.5312 -2.8713 -0.9970 38 1 -0.7188 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032101178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:15:24 Heat of formation + Delta-G solvation = -83.733504 kcal Electronic energy + Delta-G solvation = -27905.029294 eV Core-core repulsion = 23335.022298 eV Total energy + Delta-G solvation = -4570.006996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.10077 -47.68869 -47.41700 -41.07895 -39.22010 -37.92369 -34.67326 -33.47649 -32.52432 -32.07525 -28.96161 -26.90725 -25.95414 -24.84615 -24.66398 -22.92062 -21.99454 -20.91695 -19.39452 -18.68464 -18.58546 -18.38652 -17.72955 -16.91540 -16.70202 -15.82398 -15.65415 -15.56541 -14.92933 -14.72109 -14.44773 -14.37214 -14.19253 -14.04780 -13.92352 -13.76343 -13.60301 -13.49649 -13.41032 -13.18755 -12.82627 -12.33880 -12.15840 -11.40540 -11.32021 -10.99649 -10.71959 -10.68347 -10.60068 -10.50338 -10.07766 -9.88067 -9.78969 -9.74886 -9.42721 -8.86769 -8.78611 -6.86674 -5.75697 -3.07819 -0.02759 0.45352 2.46904 2.48236 2.94390 3.34465 3.39945 3.44688 3.46571 3.52576 3.79666 3.85893 4.24314 4.31432 4.40501 4.46248 4.56511 4.74608 4.89809 5.15428 5.28884 5.31722 5.36729 5.37492 5.65421 5.83812 5.84531 6.02211 6.23180 6.34898 6.51320 6.63348 6.73703 7.08807 7.23531 7.36626 7.55173 7.57359 7.99180 8.12176 9.05768 9.71999 10.61098 11.41444 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002676 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.519268 B =10462.074146 C =11223.951704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.129 3.871 11 C -0.154 4.154 12 C 0.128 3.872 13 N -0.691 5.691 14 C 0.553 3.447 15 O -0.520 6.520 16 C 0.140 3.860 17 N -0.452 5.452 18 C 0.130 3.870 19 C -0.156 4.156 20 C -0.036 4.036 21 C -0.189 4.189 22 C 0.523 3.477 23 F -0.186 7.186 24 F -0.160 7.160 25 F -0.161 7.161 26 C 0.168 3.832 27 H 0.253 0.747 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.413 0.587 34 H 0.176 0.824 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.028 0.972 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.215 -18.500 6.675 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.339 5.339 10 C 0.003 3.997 11 C -0.173 4.173 12 C 0.004 3.996 13 N -0.341 5.341 14 C 0.335 3.665 15 O -0.396 6.396 16 C 0.001 3.999 17 N -0.163 5.163 18 C -0.029 4.029 19 C -0.176 4.176 20 C -0.062 4.062 21 C -0.194 4.194 22 C 0.468 3.532 23 F -0.168 7.168 24 F -0.141 7.141 25 F -0.142 7.142 26 C 0.043 3.957 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.193 0.807 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.045 0.955 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.291 -17.980 6.194 23.788 hybrid contribution -0.324 0.453 -0.113 0.569 sum -14.615 -17.527 6.081 23.617 Atomic orbital electron populations 1.69817 1.04996 1.25287 1.56763 1.24783 0.95684 0.97508 1.02533 0.86121 0.78620 0.83457 0.77574 1.21644 1.21642 1.20630 1.19033 0.90289 0.82015 1.43689 0.90253 1.45978 1.02457 0.99290 1.86158 1.22483 0.93897 0.86467 0.96897 1.23824 0.98231 0.94603 1.00688 1.21598 0.83065 0.98415 0.96492 1.45858 1.21700 1.28620 1.37918 1.17806 0.82866 0.82405 0.83393 1.90890 1.73155 1.45541 1.29977 1.21203 0.94968 0.90601 0.93176 1.67829 1.17941 1.25507 1.05042 1.23194 0.88108 0.95256 0.96294 1.22428 1.01790 0.95420 0.97930 1.21532 0.93664 0.98441 0.92526 1.21080 0.98841 0.99131 1.00328 1.17644 0.74918 0.78750 0.81877 1.93144 1.62648 1.64866 1.96097 1.93263 1.95511 1.77333 1.47953 1.93249 1.44556 1.83764 1.92629 1.22366 0.88102 0.88432 0.96799 0.93684 0.93609 0.94588 0.89056 0.91413 0.90877 0.75034 0.80744 0.82895 0.82612 0.95460 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.33 11.39 55.49 0.63 -26.70 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.61 -15.74 3.70 -177.70 -0.66 -16.40 16 10 C 0.13 2.60 8.51 -2.97 -0.03 2.58 16 11 C -0.15 -2.76 3.93 -89.69 -0.35 -3.11 16 12 C 0.13 2.01 5.51 -4.04 -0.02 1.99 16 13 N -0.69 -10.13 5.54 -61.15 -0.34 -10.47 16 14 C 0.55 8.40 7.62 -12.18 -0.09 8.31 16 15 O -0.52 -9.08 11.27 5.35 0.06 -9.02 16 16 C 0.14 1.78 6.73 -83.01 -0.56 1.22 16 17 N -0.45 -4.93 9.54 -9.80 -0.09 -5.03 16 18 C 0.13 0.92 11.18 -17.56 -0.20 0.72 16 19 C -0.16 -0.84 10.11 -39.32 -0.40 -1.24 16 20 C -0.04 -0.26 9.53 -39.31 -0.37 -0.64 16 21 C -0.19 -2.11 5.41 -104.09 -0.56 -2.68 16 22 C 0.52 6.71 2.78 36.01 0.10 6.81 16 23 F -0.19 -2.01 16.06 2.25 0.04 -1.98 16 24 F -0.16 -2.40 15.02 2.25 0.03 -2.37 16 25 F -0.16 -2.35 15.01 2.25 0.03 -2.31 16 26 C 0.17 3.89 7.08 -2.83 -0.02 3.87 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 29 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.24 7.87 -51.93 -0.41 0.83 16 33 H 0.41 5.65 7.80 -40.82 -0.32 5.33 16 34 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 36 H 0.16 0.76 7.26 -52.49 -0.38 0.38 16 37 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 38 H 0.07 1.85 7.16 -51.93 -0.37 1.48 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -34.05 335.82 -6.99 -41.04 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.97 Total: -0.05 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -2.76 Total: 11.04 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.46 Total: -58.60 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.06 Total: -9.02 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.10 Total: -6.66 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.05 -6.99 -41.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032101178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.695 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds