Wall clock time and date at job start Sat Apr 11 2020 02:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48494 * 109.47223 * 270.00306 * 3 2 1 5 5 H 1.48506 * 109.46646 * 30.00030 * 3 2 1 6 6 H 1.48496 * 109.47208 * 149.99674 * 3 2 1 7 7 C 1.38814 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99621 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.49138 * 179.97438 * 9 7 2 11 11 C 1.53940 * 86.11662 * 155.35625 * 10 9 7 12 12 C 1.53004 * 113.73828 * 137.95111 * 11 10 9 13 13 N 1.46499 * 109.47270 * 176.93101 * 12 11 10 14 14 C 1.34771 * 120.00564 * 180.02562 * 13 12 11 15 15 O 1.21523 * 119.99539 * 359.97438 * 14 13 12 16 16 C 1.48168 * 120.00421 * 180.27161 * 14 13 12 17 17 N 1.32741 * 119.71908 * 359.45397 * 16 14 13 18 18 C 1.31503 * 121.63951 * 179.70966 * 17 16 14 19 19 C 1.38606 * 120.89980 * 0.55936 * 18 17 16 20 20 C 1.38583 * 119.34964 * 359.73097 * 19 18 17 21 21 C 1.38626 * 118.49258 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.47164 * 180.02562 * 21 20 19 23 23 F 1.39896 * 109.47113 * 359.97438 * 22 21 20 24 24 F 1.39901 * 109.46645 * 119.98133 * 22 21 20 25 25 F 1.39900 * 109.47215 * 239.97905 * 22 21 20 26 26 C 1.47810 * 134.46102 * 359.86665 * 9 7 2 27 27 H 0.97001 * 119.99688 * 0.02562 * 1 2 3 28 28 H 1.09007 * 113.76612 * 41.06076 * 10 9 7 29 29 H 1.08993 * 113.77288 * 269.66520 * 10 9 7 30 30 H 1.08995 * 113.75047 * 269.15902 * 11 10 9 31 31 H 1.08998 * 109.47202 * 56.92947 * 12 11 10 32 32 H 1.08997 * 109.47419 * 296.92845 * 12 11 10 33 33 H 0.97001 * 120.00074 * 359.97438 * 13 12 11 34 34 H 1.07993 * 119.55159 * 180.28854 * 18 17 16 35 35 H 1.07994 * 120.32188 * 179.74517 * 19 18 17 36 36 H 1.08001 * 120.75093 * 179.97438 * 20 19 18 37 37 H 1.09001 * 113.77024 * 90.37613 * 26 9 7 38 38 H 1.09000 * 113.83093 * 318.91808 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0029 11 6 0.3471 -4.0835 0.6373 12 6 -0.3635 -5.3137 0.0692 13 7 -1.6202 -5.5285 0.7909 14 6 -2.4189 -6.5625 0.4603 15 8 -2.0970 -7.3163 -0.4368 16 6 -3.6928 -6.7762 1.1863 17 7 -4.0367 -5.9523 2.1686 18 6 -5.1608 -6.1035 2.8340 19 6 -6.0283 -7.1434 2.5389 20 6 -5.7053 -8.0303 1.5242 21 6 -4.5168 -7.8429 0.8357 22 6 -4.1217 -8.7804 -0.2762 23 9 -5.1078 -9.7603 -0.4323 24 9 -3.9873 -8.0599 -1.4678 25 9 -2.9033 -9.3911 0.0395 26 6 -0.1058 -2.7571 0.0001 27 1 -0.4850 0.8401 -0.0004 28 1 2.5624 -4.0330 0.6522 29 1 1.8319 -4.2342 -1.0007 30 1 0.3594 -4.0654 1.7270 31 1 0.2762 -6.1886 0.1850 32 1 -0.5745 -5.1554 -0.9884 33 1 -1.8770 -4.9270 1.5073 34 1 -5.4094 -5.4105 3.6241 35 1 -6.9471 -7.2611 3.0941 36 1 -6.3645 -8.8488 1.2756 37 1 -0.5312 -2.8713 -0.9970 38 1 -0.7188 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032101178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:15:24 Heat of formation + Delta-G solvation = -107.318268 kcal Electronic energy + Delta-G solvation = -27906.052007 eV Core-core repulsion = 23335.022298 eV Total energy + Delta-G solvation = -4571.029708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.08629 -48.64839 -48.48261 -41.88049 -40.38572 -39.50738 -35.95770 -34.38800 -34.02526 -33.14914 -30.61788 -28.16808 -27.19034 -26.54859 -25.68271 -23.95787 -23.44086 -22.01449 -20.87957 -19.70701 -19.47972 -19.40072 -18.84089 -18.61860 -17.77255 -17.01958 -16.83385 -16.63007 -16.41467 -15.86118 -15.59368 -15.41352 -15.38983 -15.11384 -14.97075 -14.94736 -14.75376 -14.68346 -14.53330 -14.24723 -13.97556 -13.93932 -13.29671 -13.10875 -12.94769 -12.88004 -12.52405 -12.26193 -11.85255 -11.62266 -11.46869 -11.34058 -11.23480 -10.87121 -10.78605 -10.55585 -10.09985 -8.91800 -7.90043 -5.23583 -0.76545 -0.14168 1.45730 1.47918 1.56479 1.56593 1.59193 1.90804 2.47836 2.53711 2.65969 2.95270 3.04694 3.30375 3.38927 3.42175 3.54923 3.74650 3.78226 3.86571 4.03882 4.18111 4.32060 4.34235 4.57509 4.72122 4.76472 4.84118 4.85775 4.87814 5.08117 5.25147 5.31165 5.35861 5.53984 5.63744 5.94107 6.26485 6.57428 6.92422 6.99263 7.61069 8.56812 9.26847 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002676 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.519268 B =10462.074146 C =11223.951704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.237 4.237 8 H 0.084 0.916 9 N -0.645 5.645 10 C 0.128 3.872 11 C -0.116 4.116 12 C 0.140 3.860 13 N -0.691 5.691 14 C 0.548 3.452 15 O -0.551 6.551 16 C 0.111 3.889 17 N -0.474 5.474 18 C 0.124 3.876 19 C -0.124 4.124 20 C -0.036 4.036 21 C -0.200 4.200 22 C 0.518 3.482 23 F -0.175 7.175 24 F -0.179 7.179 25 F -0.176 7.176 26 C 0.166 3.834 27 H 0.248 0.752 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.418 0.582 34 H 0.211 0.789 35 H 0.203 0.797 36 H 0.183 0.817 37 H 0.011 0.989 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 -19.301 8.601 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.102 0.898 9 N -0.371 5.371 10 C 0.003 3.997 11 C -0.135 4.135 12 C 0.016 3.984 13 N -0.341 5.341 14 C 0.332 3.668 15 O -0.429 6.429 16 C -0.027 4.027 17 N -0.185 5.185 18 C -0.034 4.034 19 C -0.143 4.143 20 C -0.061 4.061 21 C -0.205 4.205 22 C 0.463 3.537 23 F -0.156 7.156 24 F -0.160 7.160 25 F -0.158 7.158 26 C 0.040 3.960 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.255 0.745 34 H 0.227 0.773 35 H 0.220 0.780 36 H 0.200 0.800 37 H 0.029 0.971 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.609 -18.815 8.131 25.764 hybrid contribution -0.015 0.634 -0.666 0.920 sum -15.624 -18.182 7.464 25.108 Atomic orbital electron populations 1.70009 1.06426 1.25584 1.58190 1.25643 0.96604 1.00891 1.02978 0.85063 0.77766 0.79044 0.77360 1.21602 1.21887 1.19159 1.19455 0.90901 0.83438 1.42711 0.89815 1.46397 1.03716 1.00732 1.86282 1.22684 0.95540 0.83497 0.98016 1.23413 0.96454 0.92795 1.00859 1.21328 0.83819 0.97640 0.95583 1.45768 1.21404 1.28949 1.37959 1.18281 0.83738 0.81646 0.83093 1.90859 1.74163 1.46491 1.31372 1.20750 0.94553 0.92514 0.94916 1.67778 1.20018 1.25585 1.05143 1.23931 0.86980 0.96276 0.96199 1.22974 1.02367 0.92912 0.96075 1.21954 0.92341 0.99557 0.92292 1.21075 1.00387 0.98602 1.00466 1.17935 0.74654 0.79179 0.81944 1.93152 1.61923 1.64474 1.96082 1.93214 1.95633 1.77842 1.49339 1.93206 1.45777 1.84092 1.92687 1.22265 0.87007 0.90878 0.95824 0.94286 0.91782 0.93433 0.87808 0.89965 0.92347 0.74499 0.77289 0.78013 0.79971 0.97119 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.04 11.39 21.65 0.25 -57.79 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.98 46.13 29.55 68.60 2.03 48.15 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -13.48 10.70 84.03 0.90 -12.58 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 N -0.64 -33.49 3.70 -716.12 -2.65 -36.14 16 10 C 0.13 5.06 8.51 86.48 0.74 5.80 16 11 C -0.12 -4.13 3.93 -10.13 -0.04 -4.17 16 12 C 0.14 4.42 5.51 86.38 0.48 4.90 16 13 N -0.69 -20.53 5.54 -465.66 -2.58 -23.11 16 14 C 0.55 17.07 7.62 86.88 0.66 17.73 16 15 O -0.55 -19.96 11.27 -3.79 -0.04 -20.00 16 16 C 0.11 2.79 6.73 41.90 0.28 3.07 16 17 N -0.47 -9.68 9.54 -184.91 -1.76 -11.44 16 18 C 0.12 1.32 11.18 84.83 0.95 2.27 16 19 C -0.12 -0.75 10.11 22.44 0.23 -0.53 16 20 C -0.04 -0.42 9.53 22.44 0.21 -0.20 16 21 C -0.20 -4.29 5.41 -19.52 -0.11 -4.40 16 22 C 0.52 13.36 2.78 71.24 0.20 13.56 16 23 F -0.17 -3.64 16.06 44.97 0.72 -2.92 16 24 F -0.18 -5.61 15.02 44.97 0.68 -4.93 16 25 F -0.18 -5.30 15.01 44.97 0.68 -4.62 16 26 C 0.17 7.90 7.08 86.45 0.61 8.51 16 27 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 30 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.06 2.03 7.87 -2.39 -0.02 2.01 16 33 H 0.42 11.53 7.80 -92.71 -0.72 10.81 16 34 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 35 H 0.20 -0.70 8.06 -2.91 -0.02 -0.72 16 36 H 0.18 1.05 7.26 -2.91 -0.02 1.03 16 37 H 0.01 0.55 7.92 -2.39 -0.02 0.53 16 38 H 0.04 2.36 7.16 -2.39 -0.02 2.34 16 Total: -1.00 -77.56 335.82 3.29 -74.28 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.40 Total: 8.04 kcal Atomic # 6 Polarization: 24.91 SS G_CDS: 5.58 Total: 30.49 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -6.75 Total: -128.49 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.04 Total: -20.00 kcal Atomic # 9 Polarization: -14.54 SS G_CDS: 2.07 Total: -12.47 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -77.56 3.29 -74.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032101178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.041 kcal (2) G-P(sol) polarization free energy of solvation -77.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds