Wall clock time and date at job start Sat Apr 11 2020 02:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99851 * 2 1 4 4 H 1.48504 * 109.47035 * 274.98586 * 3 2 1 5 5 H 1.48504 * 109.47466 * 34.98340 * 3 2 1 6 6 H 1.48500 * 109.47311 * 154.99023 * 3 2 1 7 7 C 1.38812 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99846 * 185.05087 * 7 2 1 9 9 N 1.36930 * 120.00222 * 5.05608 * 7 2 1 10 10 C 1.47073 * 136.05602 * 353.51805 * 9 7 2 11 11 C 1.53497 * 87.98344 * 207.15247 * 10 9 7 12 12 C 1.47071 * 136.06099 * 173.55796 * 9 7 2 13 13 H 1.08992 * 113.46997 * 267.69179 * 12 9 7 14 14 C 1.53007 * 113.46380 * 38.07034 * 12 9 7 15 15 N 1.46501 * 109.46989 * 285.49613 * 14 12 9 16 16 C 1.34774 * 119.99769 * 179.97438 * 15 14 12 17 17 O 1.21513 * 120.00507 * 0.02562 * 16 15 14 18 18 C 1.48170 * 119.99869 * 179.97438 * 16 15 14 19 19 C 1.39309 * 119.72699 * 180.02562 * 18 16 15 20 20 C 1.38591 * 119.06478 * 179.97438 * 19 18 16 21 21 C 1.38624 * 118.48362 * 0.02562 * 20 19 18 22 22 C 1.38558 * 119.35683 * 0.02562 * 21 20 19 23 23 C 1.50695 * 119.54906 * 180.02562 * 22 21 20 24 24 F 1.39900 * 109.47022 * 89.99963 * 23 22 21 25 25 F 1.39896 * 109.46963 * 209.99590 * 23 22 21 26 26 F 1.39899 * 109.47444 * 329.99597 * 23 22 21 27 27 N 1.31523 * 120.90016 * 0.27085 * 22 21 20 28 28 H 0.96994 * 120.00458 * 359.97438 * 1 2 3 29 29 H 1.08993 * 113.46528 * 321.93135 * 10 9 7 30 30 H 1.09000 * 113.46749 * 92.37041 * 10 9 7 31 31 H 1.09001 * 114.20524 * 220.34487 * 11 10 9 32 32 H 1.09001 * 114.21077 * 87.51419 * 11 10 9 33 33 H 1.08997 * 109.47319 * 165.49550 * 14 12 9 34 34 H 1.09007 * 109.46853 * 45.49223 * 14 12 9 35 35 H 0.97002 * 120.00204 * 359.97438 * 15 14 12 36 36 H 1.08002 * 120.46470 * 359.97438 * 19 18 16 37 37 H 1.07995 * 120.75437 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.32022 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2021 0.0005 8 1 3.0871 -1.2039 0.0829 9 7 1.3296 -2.3858 -0.1034 10 6 -0.0821 -2.7982 -0.1140 11 6 0.3667 -4.1560 0.4436 12 6 1.6885 -3.8042 -0.2530 13 1 1.7342 -4.1332 -1.2910 14 6 2.9267 -4.2073 0.5503 15 7 4.1270 -3.6848 -0.1075 16 6 5.3428 -3.9174 0.4255 17 8 5.4436 -4.5608 1.4514 18 6 6.5568 -3.3895 -0.2401 19 6 7.8107 -3.6337 0.3155 20 6 8.9371 -3.1340 -0.3188 21 6 8.7699 -2.4065 -1.4870 22 6 7.4923 -2.2012 -1.9824 23 6 7.3057 -1.4115 -3.2522 24 9 7.3427 -2.2781 -4.3499 25 9 6.0700 -0.7566 -3.2167 26 9 8.3309 -0.4669 -3.3690 27 7 6.4400 -2.6820 -1.3570 28 1 -0.4850 0.8400 0.0004 29 1 -0.7054 -2.2300 0.5764 30 1 -0.5089 -2.8596 -1.1151 31 1 -0.1529 -5.0108 0.0105 32 1 0.4308 -4.1936 1.5311 33 1 2.9864 -5.2942 0.6050 34 1 2.8562 -3.7960 1.5574 35 1 4.0466 -3.1715 -0.9266 36 1 7.9038 -4.2045 1.2276 37 1 9.9224 -3.3073 0.0877 38 1 9.6272 -2.0030 -2.0054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038833160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:15:48 Heat of formation + Delta-G solvation = -107.176228 kcal Electronic energy + Delta-G solvation = -28231.773553 eV Core-core repulsion = 23660.750004 eV Total energy + Delta-G solvation = -4571.023549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.28106 -48.80721 -48.75123 -41.92942 -40.48044 -39.60063 -35.70012 -34.30812 -33.95921 -33.46560 -30.00929 -29.37608 -27.85199 -25.91859 -25.40375 -23.90986 -23.40035 -21.94258 -21.06750 -19.96993 -19.67021 -19.62929 -18.85621 -18.27234 -17.42470 -17.27084 -17.17880 -16.59324 -16.47245 -15.93625 -15.72750 -15.61312 -15.53480 -15.18375 -15.13446 -14.90914 -14.89960 -14.89505 -14.61397 -14.40818 -13.85843 -13.64287 -13.38147 -13.15377 -12.98188 -12.73663 -12.62766 -12.33111 -11.91993 -11.70959 -11.59065 -11.26430 -11.13995 -10.87637 -10.78456 -10.69309 -10.07754 -8.89227 -7.91579 -5.21375 -0.70679 -0.23701 1.27478 1.38560 1.41153 1.47087 1.47917 1.99096 2.36250 2.43953 2.44841 2.71587 3.20099 3.25232 3.30376 3.45566 3.65822 3.71106 3.80021 3.92047 4.06465 4.11256 4.22916 4.32942 4.60877 4.67745 4.77836 4.82142 4.89096 5.05471 5.07879 5.23245 5.31175 5.35196 5.57368 5.72533 5.95259 6.13202 6.46983 6.92659 6.99946 7.61697 8.62135 9.26681 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.004645 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.617234 B = 6026.591340 C = 7486.050401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.960 3.040 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.205 4.205 8 H 0.079 0.921 9 N -0.629 5.629 10 C 0.145 3.855 11 C -0.129 4.129 12 C 0.128 3.872 13 H 0.063 0.937 14 C 0.127 3.873 15 N -0.695 5.695 16 C 0.563 3.437 17 O -0.563 6.563 18 C 0.064 3.936 19 C -0.080 4.080 20 C -0.055 4.055 21 C -0.090 4.090 22 C 0.016 3.984 23 C 0.523 3.477 24 F -0.171 7.171 25 F -0.180 7.180 26 F -0.162 7.162 27 N -0.449 5.449 28 H 0.246 0.754 29 H 0.034 0.966 30 H 0.021 0.979 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.411 0.589 36 H 0.172 0.828 37 H 0.208 0.792 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.704 -9.316 -3.874 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.789 3.211 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.333 4.333 8 H 0.097 0.903 9 N -0.355 5.355 10 C 0.020 3.980 11 C -0.168 4.168 12 C 0.022 3.978 13 H 0.081 0.919 14 C 0.003 3.997 15 N -0.344 5.344 16 C 0.348 3.652 17 O -0.443 6.443 18 C -0.075 4.075 19 C -0.100 4.100 20 C -0.080 4.080 21 C -0.109 4.109 22 C -0.125 4.125 23 C 0.468 3.532 24 F -0.152 7.152 25 F -0.161 7.161 26 F -0.143 7.143 27 N -0.160 5.160 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.247 0.753 36 H 0.189 0.811 37 H 0.225 0.775 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 19.914 -9.259 -3.477 22.234 hybrid contribution 0.344 1.666 -0.558 1.791 sum 20.257 -7.593 -4.035 22.007 Atomic orbital electron populations 1.69997 1.06102 1.25248 1.58533 1.25465 0.96387 1.00207 1.03776 0.85325 0.77849 0.80637 0.77243 1.21667 1.21962 1.19987 1.19105 0.90684 0.82728 1.40808 0.90324 1.45997 1.03759 1.01225 1.84527 1.22006 0.87572 0.91668 0.96778 1.23478 0.95275 0.97449 1.00570 1.22595 0.93226 0.84699 0.97265 0.91929 1.21770 0.82975 0.98797 0.96176 1.45948 1.05713 1.53946 1.28755 1.18119 0.83355 0.79865 0.83833 1.90738 1.86845 1.42192 1.24477 1.21087 0.94966 0.98684 0.92801 1.22651 0.90930 0.95926 1.00508 1.22231 1.01002 0.92392 0.92387 1.22531 0.96588 0.95309 0.96497 1.21081 0.92236 1.02701 0.96525 1.17934 0.74042 0.77741 0.83491 1.93233 1.96101 1.69589 1.56320 1.93262 1.44148 1.82100 1.96597 1.93216 1.58932 1.65794 1.96360 1.66848 1.34676 1.06561 1.07938 0.94450 0.94724 0.96140 0.88033 0.89718 0.89259 0.93060 0.75345 0.81078 0.77495 0.79222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.41 11.62 21.65 0.25 -58.16 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 3 Si 0.96 47.86 29.56 68.60 2.03 49.89 16 4 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 5 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.20 -11.49 10.54 84.03 0.89 -10.60 16 8 H 0.08 4.34 7.61 -2.91 -0.02 4.32 16 9 N -0.63 -31.48 3.65 -713.83 -2.60 -34.09 16 10 C 0.15 6.78 7.31 83.18 0.61 7.38 16 11 C -0.13 -4.44 8.03 30.93 0.25 -4.19 16 12 C 0.13 4.89 4.11 41.80 0.17 5.06 16 13 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 14 C 0.13 4.51 5.52 86.38 0.48 4.99 16 15 N -0.70 -25.04 5.32 -465.64 -2.48 -27.52 16 16 C 0.56 19.24 7.81 86.88 0.68 19.92 16 17 O -0.56 -20.89 16.32 -3.76 -0.06 -20.95 16 18 C 0.06 1.79 6.75 41.91 0.28 2.07 16 19 C -0.08 -1.49 9.63 22.61 0.22 -1.27 16 20 C -0.05 -0.58 10.17 22.45 0.23 -0.36 16 21 C -0.09 -1.21 9.44 22.44 0.21 -1.00 16 22 C 0.02 0.38 6.30 42.68 0.27 0.65 16 23 C 0.52 12.76 3.43 71.23 0.24 13.01 16 24 F -0.17 -4.09 17.30 44.97 0.78 -3.31 16 25 F -0.18 -5.74 17.03 44.97 0.77 -4.98 16 26 F -0.16 -3.28 16.44 44.97 0.74 -2.54 16 27 N -0.45 -13.24 9.14 -173.08 -1.58 -14.82 16 28 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.03 1.83 7.31 -2.39 -0.02 1.81 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.08 2.86 8.12 -2.39 -0.02 2.84 16 33 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.41 15.57 7.80 -92.71 -0.72 14.85 16 36 H 0.17 2.76 7.64 -2.91 -0.02 2.74 16 37 H 0.21 0.11 8.06 -2.91 -0.02 0.09 16 38 H 0.19 1.14 7.59 -2.91 -0.02 1.11 16 Total: -1.00 -74.95 345.39 3.23 -71.72 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.40 Total: 12.45 kcal Atomic # 6 Polarization: 27.32 SS G_CDS: 4.99 Total: 32.31 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -6.41 Total: -134.58 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 9 Polarization: -13.12 SS G_CDS: 2.28 Total: -10.83 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -74.95 3.23 -71.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038833160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.458 kcal (2) G-P(sol) polarization free energy of solvation -74.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds