Wall clock time and date at job start Sat Apr 11 2020 02:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.08996 * 113.46545 * 267.45937 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21518 * 119.99881 * 359.97438 * 16 15 14 18 18 C 1.48151 * 120.00016 * 180.02562 * 16 15 14 19 19 C 1.39838 * 120.91953 * 359.97438 * 18 16 15 20 20 C 1.38123 * 119.00285 * 180.02562 * 19 18 16 21 21 N 1.31829 * 120.89607 * 0.02562 * 20 19 18 22 22 C 1.31796 * 122.05149 * 359.97438 * 21 20 19 23 23 C 1.38174 * 120.89216 * 359.71263 * 22 21 20 24 24 C 1.50703 * 120.50258 * 180.29398 * 23 22 21 25 25 F 1.39898 * 109.46803 * 0.28954 * 24 23 22 26 26 F 1.39893 * 109.47112 * 120.28879 * 24 23 22 27 27 F 1.39897 * 109.46860 * 240.29043 * 24 23 22 28 28 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 29 29 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 30 30 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 31 31 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 32 32 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 33 33 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 34 34 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 35 35 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 36 36 H 1.08002 * 120.50122 * 0.02562 * 19 18 16 37 37 H 1.08002 * 119.55503 * 179.97438 * 20 19 18 38 38 H 1.07995 * 119.55486 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7412 -4.2474 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4018 -4.4102 1.8362 18 6 6.5490 -3.4177 0.0555 19 6 6.4790 -2.7968 -1.1955 20 6 7.6483 -2.3885 -1.8069 21 7 8.8171 -2.5779 -1.2273 22 6 8.9277 -3.1587 -0.0493 23 6 7.8088 -3.5922 0.6357 24 6 7.9450 -4.2493 1.9851 25 9 9.2965 -4.3051 2.3423 26 9 7.2409 -3.5064 2.9387 27 9 7.4241 -5.5464 1.9268 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7200 -2.1579 0.6255 30 1 -0.4978 -2.9554 -0.9903 31 1 -0.1719 -4.9834 0.3522 32 1 0.3904 -4.0224 1.7929 33 1 2.8169 -3.6293 1.8207 34 1 2.9555 -5.2160 1.0261 35 1 4.0519 -3.2609 -0.6924 36 1 5.5249 -2.6388 -1.6764 37 1 7.6046 -1.9084 -2.7733 38 1 9.9057 -3.2930 0.3886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038875151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:15:57 Heat of formation + Delta-G solvation = -80.931443 kcal Electronic energy + Delta-G solvation = -28707.364138 eV Core-core repulsion = 24137.478648 eV Total energy + Delta-G solvation = -4569.885490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.01020 -47.59488 -47.33307 -40.94606 -39.26797 -38.14761 -34.48749 -33.37510 -32.40368 -32.14056 -28.33835 -27.92878 -26.41174 -24.92021 -23.57336 -22.92461 -22.01256 -20.81836 -19.46984 -18.88193 -18.33069 -18.29509 -17.77684 -16.82409 -16.65795 -15.66885 -15.52478 -15.47527 -15.02007 -14.95795 -14.31858 -14.22647 -14.19127 -14.06673 -13.86726 -13.77419 -13.53336 -13.50884 -13.28682 -13.07221 -12.99366 -12.03565 -11.97007 -11.64262 -11.22485 -11.09703 -10.86938 -10.66618 -10.44757 -10.37873 -10.06731 -9.92125 -9.81542 -9.79818 -9.36471 -8.91660 -8.79886 -7.00559 -5.87172 -3.20376 0.15251 0.48232 2.58257 2.73222 3.06007 3.30159 3.35052 3.38656 3.38945 3.65231 3.94313 4.01531 4.25128 4.31773 4.39831 4.50246 4.74816 4.80995 5.08301 5.16026 5.27877 5.32092 5.43225 5.47635 5.59894 5.79698 5.96850 5.99789 6.21160 6.29605 6.49123 6.54927 6.67508 7.12300 7.29123 7.34352 7.48172 7.54231 7.86925 8.16513 8.91775 9.59744 10.52010 11.29848 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.004146 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.197859 B = 6751.525108 C = 7734.577494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.004 4.004 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.218 4.218 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.160 4.160 12 C 0.126 3.874 13 H 0.050 0.950 14 C 0.121 3.879 15 N -0.696 5.696 16 C 0.541 3.459 17 O -0.518 6.518 18 C -0.030 4.030 19 C -0.142 4.142 20 C 0.130 3.870 21 N -0.469 5.469 22 C 0.145 3.855 23 C -0.194 4.194 24 C 0.524 3.476 25 F -0.185 7.185 26 F -0.160 7.160 27 F -0.163 7.163 28 H 0.254 0.746 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.404 0.596 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.543 -8.970 -2.699 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.003 4.003 15 N -0.346 5.346 16 C 0.325 3.675 17 O -0.395 6.395 18 C -0.042 4.042 19 C -0.162 4.162 20 C -0.027 4.027 21 N -0.178 5.178 22 C -0.012 4.012 23 C -0.199 4.199 24 C 0.468 3.532 25 F -0.166 7.166 26 F -0.141 7.141 27 F -0.144 7.144 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.240 0.760 36 H 0.173 0.827 37 H 0.192 0.808 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 14.336 -8.714 -2.304 16.934 hybrid contribution -0.394 0.912 0.017 0.994 sum 13.942 -7.802 -2.287 16.139 Atomic orbital electron populations 1.69832 1.04985 1.25301 1.56038 1.24773 0.95631 0.97436 1.02305 0.86132 0.78683 0.84006 0.77428 1.20544 1.21651 1.21603 1.18833 0.89893 0.81336 1.44438 0.90313 1.45662 1.02664 0.98471 1.85980 1.22030 0.88638 0.90186 0.96551 1.23666 0.96673 0.99139 1.00422 1.22446 0.91936 0.87913 0.95891 0.93313 1.21960 0.82432 0.98623 0.97318 1.45831 1.05594 1.59826 1.23320 1.18036 0.83314 0.80491 0.85695 1.90859 1.86421 1.42502 1.19718 1.20385 0.93319 0.95739 0.94719 1.22533 1.01771 0.97639 0.94257 1.23106 0.86857 0.93267 0.99466 1.67778 1.28102 1.12295 1.09614 1.22753 0.97939 0.90686 0.89842 1.21231 0.95836 1.06151 0.96671 1.17667 0.73171 0.77486 0.84837 1.93144 1.33951 1.96449 1.93068 1.93264 1.78508 1.76294 1.66054 1.93238 1.86463 1.38185 1.96494 0.93614 0.90937 0.95615 0.92260 0.90123 0.90525 0.91678 0.76037 0.82719 0.80835 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.00 11.51 55.49 0.64 -25.36 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 3 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -5.54 10.55 -15.06 -0.16 -5.70 16 8 H 0.08 1.91 7.51 -52.49 -0.39 1.51 16 9 N -0.60 -13.83 3.65 -176.98 -0.65 -14.48 16 10 C 0.15 3.30 7.39 -8.50 -0.06 3.24 16 11 C -0.16 -2.74 8.03 -26.21 -0.21 -2.95 16 12 C 0.13 2.25 4.10 -72.39 -0.30 1.95 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 14 C 0.12 2.03 5.52 -4.04 -0.02 2.01 16 15 N -0.70 -10.91 5.29 -61.15 -0.32 -11.23 16 16 C 0.54 8.78 7.63 -12.19 -0.09 8.68 16 17 O -0.52 -9.79 11.59 5.35 0.06 -9.72 16 18 C -0.03 -0.41 5.88 -104.65 -0.62 -1.03 16 19 C -0.14 -1.52 9.62 -39.03 -0.38 -1.90 16 20 C 0.13 1.24 11.17 -17.60 -0.20 1.04 16 21 N -0.47 -5.15 10.33 -13.31 -0.14 -5.29 16 22 C 0.14 1.59 10.59 -17.59 -0.19 1.40 16 23 C -0.19 -2.54 5.41 -104.06 -0.56 -3.10 16 24 C 0.52 7.50 2.78 36.01 0.10 7.60 16 25 F -0.18 -2.26 16.01 2.25 0.04 -2.22 16 26 F -0.16 -2.69 15.14 2.25 0.03 -2.65 16 27 F -0.16 -2.56 15.12 2.25 0.03 -2.52 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.07 1.79 7.13 -51.93 -0.37 1.42 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 5.79 6.52 -40.82 -0.27 5.52 16 36 H 0.16 1.40 6.54 -52.49 -0.34 1.06 16 37 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.18 1.47 7.17 -52.49 -0.38 1.09 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -31.62 333.76 -6.92 -38.53 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.84 Total: 2.65 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -2.78 Total: 11.03 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.47 Total: -56.36 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.06 Total: -9.72 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.10 Total: -7.40 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.62 -6.92 -38.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038875151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.398 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds