Wall clock time and date at job start Sat Apr 11 2020 02:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.08996 * 113.46545 * 267.45937 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21518 * 119.99881 * 359.97438 * 16 15 14 18 18 C 1.48151 * 120.00016 * 180.02562 * 16 15 14 19 19 C 1.39838 * 120.91953 * 359.97438 * 18 16 15 20 20 C 1.38123 * 119.00285 * 180.02562 * 19 18 16 21 21 N 1.31829 * 120.89607 * 0.02562 * 20 19 18 22 22 C 1.31796 * 122.05149 * 359.97438 * 21 20 19 23 23 C 1.38174 * 120.89216 * 359.71263 * 22 21 20 24 24 C 1.50703 * 120.50258 * 180.29398 * 23 22 21 25 25 F 1.39898 * 109.46803 * 0.28954 * 24 23 22 26 26 F 1.39893 * 109.47112 * 120.28879 * 24 23 22 27 27 F 1.39897 * 109.46860 * 240.29043 * 24 23 22 28 28 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 29 29 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 30 30 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 31 31 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 32 32 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 33 33 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 34 34 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 35 35 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 36 36 H 1.08002 * 120.50122 * 0.02562 * 19 18 16 37 37 H 1.08002 * 119.55503 * 179.97438 * 20 19 18 38 38 H 1.07995 * 119.55486 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7412 -4.2474 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4018 -4.4102 1.8362 18 6 6.5490 -3.4177 0.0555 19 6 6.4790 -2.7968 -1.1955 20 6 7.6483 -2.3885 -1.8069 21 7 8.8171 -2.5779 -1.2273 22 6 8.9277 -3.1587 -0.0493 23 6 7.8088 -3.5922 0.6357 24 6 7.9450 -4.2493 1.9851 25 9 9.2965 -4.3051 2.3423 26 9 7.2409 -3.5064 2.9387 27 9 7.4241 -5.5464 1.9268 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7200 -2.1579 0.6255 30 1 -0.4978 -2.9554 -0.9903 31 1 -0.1719 -4.9834 0.3522 32 1 0.3904 -4.0224 1.7929 33 1 2.8169 -3.6293 1.8207 34 1 2.9555 -5.2160 1.0261 35 1 4.0519 -3.2609 -0.6924 36 1 5.5249 -2.6388 -1.6764 37 1 7.6046 -1.9084 -2.7733 38 1 9.9057 -3.2930 0.3886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038875151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:15:56 Heat of formation + Delta-G solvation = -101.796405 kcal Electronic energy + Delta-G solvation = -28708.268910 eV Core-core repulsion = 24137.478648 eV Total energy + Delta-G solvation = -4570.790262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.12260 -48.67986 -48.52241 -41.92106 -40.51469 -39.63895 -35.81510 -34.38504 -34.19256 -33.11872 -29.99667 -29.44122 -27.46158 -25.93000 -25.38901 -24.03580 -23.30292 -22.02924 -21.03911 -20.02381 -19.43835 -19.43254 -18.93732 -18.31688 -17.81151 -17.14669 -16.70969 -16.60882 -16.43122 -15.88813 -15.79228 -15.42632 -15.36563 -15.30743 -15.09614 -14.98479 -14.81908 -14.73149 -14.61258 -14.40585 -13.96311 -13.62948 -13.35716 -12.99280 -12.92302 -12.71223 -12.59362 -12.29906 -11.87416 -11.65444 -11.55129 -11.35209 -11.08278 -10.85799 -10.74947 -10.62400 -10.13766 -8.88531 -7.86978 -5.18424 -0.80242 -0.35380 1.43517 1.46345 1.53520 1.53753 1.63749 1.89745 2.43878 2.46620 2.62484 2.95136 3.22496 3.25695 3.36599 3.38766 3.43920 3.50287 3.80531 3.94022 3.95337 4.11741 4.34316 4.41855 4.42289 4.61729 4.64829 4.69704 4.87284 5.07197 5.09073 5.22188 5.29246 5.34318 5.59902 5.74839 5.97617 6.31335 6.52896 6.92902 6.95815 7.65155 8.64492 9.30885 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.004146 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.197859 B = 6751.525108 C = 7734.577494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.304 1.304 7 C -0.204 4.204 8 H 0.090 0.910 9 N -0.629 5.629 10 C 0.142 3.858 11 C -0.136 4.136 12 C 0.135 3.865 13 H 0.076 0.924 14 C 0.130 3.870 15 N -0.693 5.693 16 C 0.538 3.462 17 O -0.551 6.551 18 C -0.051 4.051 19 C -0.135 4.135 20 C 0.141 3.859 21 N -0.476 5.476 22 C 0.152 3.848 23 C -0.208 4.208 24 C 0.521 3.479 25 F -0.174 7.174 26 F -0.179 7.179 27 F -0.174 7.174 28 H 0.244 0.756 29 H 0.034 0.966 30 H 0.025 0.975 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.411 0.589 36 H 0.173 0.827 37 H 0.213 0.787 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.383 -9.687 -4.384 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.219 1.219 6 H -0.232 1.232 7 C -0.332 4.332 8 H 0.107 0.893 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.174 4.174 12 C 0.028 3.972 13 H 0.093 0.907 14 C 0.005 3.995 15 N -0.343 5.343 16 C 0.324 3.676 17 O -0.430 6.430 18 C -0.062 4.062 19 C -0.156 4.156 20 C -0.015 4.015 21 N -0.185 5.185 22 C -0.005 4.005 23 C -0.212 4.212 24 C 0.466 3.534 25 F -0.155 7.155 26 F -0.161 7.161 27 F -0.156 7.156 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.248 0.752 36 H 0.190 0.810 37 H 0.230 0.770 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 16.215 -9.466 -4.007 19.199 hybrid contribution -0.926 1.054 0.519 1.496 sum 15.290 -8.412 -3.488 17.796 Atomic orbital electron populations 1.70010 1.06344 1.25078 1.58845 1.25493 0.96332 1.00420 1.03954 0.85224 0.78531 0.80567 0.76378 1.18675 1.21926 1.23173 1.19220 0.90574 0.82313 1.41121 0.89253 1.45970 1.03593 0.99992 1.85932 1.22042 0.87840 0.92028 0.96421 1.23491 0.95861 0.98181 0.99913 1.22586 0.92645 0.84790 0.97155 0.90705 1.21730 0.82662 0.99380 0.95701 1.45757 1.05229 1.59845 1.23493 1.18441 0.84095 0.79750 0.85360 1.90839 1.86979 1.43978 1.21220 1.20276 0.92209 0.97656 0.96075 1.22771 1.03195 0.96577 0.93018 1.23748 0.85786 0.91697 1.00318 1.67899 1.28778 1.12314 1.09464 1.23073 0.98114 0.89623 0.89644 1.21208 0.96494 1.07332 0.96169 1.17868 0.73303 0.76973 0.85292 1.93156 1.32881 1.96371 1.93079 1.93218 1.79128 1.76714 1.67006 1.93205 1.86760 1.39048 1.96561 0.94656 0.94793 0.95694 0.88213 0.90432 0.93593 0.89732 0.75171 0.81008 0.77015 0.78651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.65 11.51 21.65 0.25 -55.40 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.96 43.93 29.55 68.60 2.03 45.96 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 7 C -0.20 -10.25 10.55 84.03 0.89 -9.37 16 8 H 0.09 4.18 7.51 -2.91 -0.02 4.16 16 9 N -0.63 -28.43 3.65 -713.85 -2.61 -31.04 16 10 C 0.14 6.18 7.39 83.18 0.61 6.80 16 11 C -0.14 -4.37 8.03 30.94 0.25 -4.12 16 12 C 0.13 4.49 4.10 41.80 0.17 4.67 16 13 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 14 C 0.13 4.16 5.52 86.38 0.48 4.63 16 15 N -0.69 -20.54 5.29 -465.66 -2.46 -23.01 16 16 C 0.54 16.95 7.63 86.88 0.66 17.62 16 17 O -0.55 -20.82 11.59 -3.77 -0.04 -20.86 16 18 C -0.05 -1.30 5.88 -19.88 -0.12 -1.42 16 19 C -0.14 -2.49 9.62 22.63 0.22 -2.27 16 20 C 0.14 2.14 11.17 84.67 0.95 3.09 16 21 N -0.48 -8.86 10.33 -196.01 -2.03 -10.88 16 22 C 0.15 2.95 10.59 84.68 0.90 3.85 16 23 C -0.21 -5.13 5.41 -19.50 -0.11 -5.24 16 24 C 0.52 14.71 2.78 71.24 0.20 14.91 16 25 F -0.17 -4.09 16.01 44.97 0.72 -3.37 16 26 F -0.18 -6.09 15.14 44.97 0.68 -5.40 16 27 F -0.17 -5.49 15.12 44.97 0.68 -4.81 16 28 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.03 1.72 7.13 -2.39 -0.02 1.70 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.08 2.56 8.12 -2.39 -0.02 2.54 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.41 10.78 6.52 -92.71 -0.60 10.18 16 36 H 0.17 2.50 6.54 -2.91 -0.02 2.48 16 37 H 0.21 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.20 2.79 7.17 -2.91 -0.02 2.77 16 Total: -1.00 -70.40 333.76 3.31 -67.09 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.53 Total: 11.85 kcal Atomic # 6 Polarization: 24.30 SS G_CDS: 5.56 Total: 29.87 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -6.85 Total: -120.33 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.04 Total: -20.86 kcal Atomic # 9 Polarization: -15.66 SS G_CDS: 2.08 Total: -13.58 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -70.40 3.31 -67.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038875151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.702 kcal (2) G-P(sol) polarization free energy of solvation -70.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds