Wall clock time and date at job start Sat Apr 11 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48494 * 109.47197 * 95.01032 * 3 2 1 5 5 H 1.48497 * 109.46819 * 215.01006 * 3 2 1 6 6 H 1.48507 * 109.46924 * 335.00976 * 3 2 1 7 7 C 1.38802 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00246 * 174.92327 * 7 2 1 9 9 N 1.36938 * 120.00063 * 354.92493 * 7 2 1 10 10 C 1.47060 * 136.05760 * 6.04677 * 9 7 2 11 11 C 1.53757 * 87.88857 * 152.96521 * 10 9 7 12 12 C 1.47067 * 136.05706 * 186.42095 * 9 7 2 13 13 H 1.09003 * 113.47306 * 92.30329 * 12 9 7 14 14 C 1.52999 * 113.46817 * 321.86166 * 12 9 7 15 15 N 1.46498 * 109.47409 * 74.50760 * 14 12 9 16 16 C 1.34779 * 120.00418 * 180.02562 * 15 14 12 17 17 O 1.21509 * 119.99557 * 359.97438 * 16 15 14 18 18 C 1.48166 * 119.99888 * 179.97438 * 16 15 14 19 19 N 1.32749 * 119.72268 * 359.72494 * 18 16 15 20 20 C 1.31497 * 121.63872 * 179.70915 * 19 18 16 21 21 C 1.38602 * 120.90269 * 0.56925 * 20 19 18 22 22 C 1.38581 * 119.35050 * 359.72144 * 21 20 19 23 23 C 1.38636 * 118.48876 * 359.97438 * 22 21 20 24 24 C 1.50707 * 120.46906 * 179.97438 * 23 22 21 25 25 F 1.39903 * 109.46695 * 0.02562 * 24 23 22 26 26 F 1.39896 * 109.46754 * 120.02277 * 24 23 22 27 27 F 1.39898 * 109.46877 * 240.02775 * 24 23 22 28 28 H 0.97005 * 119.99980 * 359.97438 * 1 2 3 29 29 H 1.09003 * 113.47161 * 267.69692 * 10 9 7 30 30 H 1.09003 * 113.47055 * 38.13660 * 10 9 7 31 31 H 1.09004 * 114.39720 * 272.67401 * 11 10 9 32 32 H 1.09008 * 114.26541 * 139.79526 * 11 10 9 33 33 H 1.08999 * 109.47457 * 194.50702 * 14 12 9 34 34 H 1.09008 * 109.47380 * 314.50825 * 14 12 9 35 35 H 0.97002 * 119.99534 * 359.97438 * 15 14 12 36 36 H 1.07999 * 119.54692 * 180.26403 * 20 19 18 37 37 H 1.07998 * 120.32503 * 179.74528 * 21 20 19 38 38 H 1.08003 * 120.75779 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6036 1.9853 1.3947 5 1 3.4908 1.4731 -0.8033 6 1 1.3986 2.6810 -0.5915 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2039 -0.0833 9 7 1.3296 -2.3857 0.1038 10 6 -0.0821 -2.7973 0.1226 11 6 0.3656 -4.1560 -0.4410 12 6 1.6886 -3.8041 0.2532 13 1 1.7351 -4.1332 1.2913 14 6 2.9253 -4.2076 -0.5522 15 7 4.1268 -3.6853 0.1034 16 6 5.3418 -3.9182 -0.4316 17 8 5.4405 -4.5619 -1.4575 18 6 6.5568 -3.3894 0.2311 19 7 6.4420 -2.6822 1.3487 20 6 7.4952 -2.1999 1.9711 21 6 8.7722 -2.4042 1.4724 22 6 8.9371 -3.1323 0.3048 23 6 7.8093 -3.6340 -0.3264 24 6 7.9369 -4.4313 -1.5989 25 9 9.2870 -4.5353 -1.9506 26 9 7.4063 -5.7108 -1.4025 27 9 7.2359 -3.7880 -2.6245 28 1 -0.4850 0.8401 0.0004 29 1 -0.5025 -2.8610 1.1263 30 1 -0.7097 -2.2271 -0.5624 31 1 0.4277 -4.1940 -1.5286 32 1 -0.1518 -5.0127 -0.0089 33 1 2.9847 -5.2946 -0.6067 34 1 2.8532 -3.7967 -1.5593 35 1 4.0479 -3.1711 0.9221 36 1 7.3630 -1.6326 2.8805 37 1 9.6304 -2.0004 1.9890 38 1 9.9217 -3.3056 -0.1036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038875655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:04 Heat of formation + Delta-G solvation = -79.791569 kcal Electronic energy + Delta-G solvation = -28732.821004 eV Core-core repulsion = 24162.984943 eV Total energy + Delta-G solvation = -4569.836061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.97976 -47.56944 -47.29010 -40.91073 -39.07251 -38.00745 -34.38001 -33.26769 -32.35173 -32.15313 -28.24431 -27.81705 -26.38195 -24.84306 -23.46260 -22.84001 -21.97922 -20.67594 -19.36160 -18.72067 -18.45716 -18.26198 -17.79280 -16.78683 -16.53305 -15.66957 -15.54024 -15.33248 -14.94548 -14.57519 -14.30979 -14.23617 -14.05505 -13.90427 -13.81026 -13.68247 -13.47627 -13.41816 -13.28562 -13.09259 -12.83755 -12.02013 -11.90563 -11.55622 -11.09415 -10.98993 -10.78533 -10.58092 -10.53575 -10.33974 -10.02556 -9.84523 -9.75729 -9.72623 -9.23077 -8.81807 -8.60926 -6.88884 -5.78163 -3.09663 0.13152 0.60607 2.61303 2.65177 3.15267 3.37778 3.43002 3.44587 3.53242 3.65629 3.96180 4.00432 4.37368 4.42143 4.49863 4.53458 4.69863 4.89202 5.05229 5.20529 5.37836 5.43837 5.50002 5.55654 5.71304 5.91495 5.99423 6.07971 6.30356 6.39268 6.59421 6.68346 6.80929 7.23650 7.27225 7.37608 7.58523 7.79884 7.97187 8.35093 9.03311 9.70127 10.63096 11.39523 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.004193 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.929098 B = 6675.589901 C = 7727.896902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.154 3.846 11 C -0.161 4.161 12 C 0.126 3.874 13 H 0.050 0.950 14 C 0.119 3.881 15 N -0.682 5.682 16 C 0.551 3.449 17 O -0.525 6.525 18 C 0.143 3.857 19 N -0.450 5.450 20 C 0.130 3.870 21 C -0.158 4.158 22 C -0.037 4.037 23 C -0.191 4.191 24 C 0.524 3.476 25 F -0.187 7.187 26 F -0.162 7.162 27 F -0.159 7.159 28 H 0.253 0.747 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.415 0.585 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.199 -8.264 3.641 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.215 1.215 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.341 4.341 8 H 0.099 0.901 9 N -0.326 5.326 10 C 0.029 3.971 11 C -0.200 4.200 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.005 4.005 15 N -0.331 5.331 16 C 0.334 3.666 17 O -0.402 6.402 18 C 0.003 3.997 19 N -0.161 5.161 20 C -0.029 4.029 21 C -0.178 4.178 22 C -0.063 4.063 23 C -0.195 4.195 24 C 0.469 3.531 25 F -0.169 7.169 26 F -0.143 7.143 27 F -0.140 7.140 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.252 0.748 36 H 0.191 0.809 37 H 0.170 0.830 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 16.386 -8.222 3.161 18.604 hybrid contribution 1.371 1.131 0.132 1.783 sum 17.758 -7.091 3.294 19.403 Atomic orbital electron populations 1.69842 1.04987 1.25336 1.56151 1.24788 0.95610 0.97371 1.02443 0.86235 0.78767 0.83779 0.77639 1.21528 1.20788 1.21661 1.18851 0.90560 0.81410 1.43255 0.90146 1.45695 1.02583 0.99916 1.84424 1.22028 0.88600 0.89074 0.97432 1.23723 0.96879 0.98955 1.00414 1.22432 0.91762 0.87780 0.96228 0.93328 1.21960 0.82992 0.97644 0.97921 1.45795 1.04995 1.53568 1.28772 1.17794 0.83108 0.81181 0.84548 1.90860 1.86024 1.40260 1.23045 1.21259 0.92686 0.93895 0.91857 1.67860 1.34227 1.07387 1.06592 1.23194 0.87518 0.93835 0.98324 1.22404 0.99743 0.99207 0.96431 1.21507 0.98412 0.92578 0.93757 1.21074 0.95927 1.04567 0.97966 1.17637 0.73038 0.78638 0.83808 1.93138 1.34270 1.96313 1.93147 1.93238 1.86074 1.39942 1.95008 1.93267 1.78612 1.81175 1.60926 0.93672 0.95567 0.91281 0.90160 0.92299 0.91733 0.90622 0.74813 0.80855 0.82993 0.82699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 11.61 55.49 0.64 -26.28 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.21 -5.77 10.54 -15.06 -0.16 -5.93 16 8 H 0.08 2.13 7.61 -52.49 -0.40 1.73 16 9 N -0.60 -14.66 3.65 -176.86 -0.64 -15.30 16 10 C 0.15 3.52 7.33 -8.38 -0.06 3.46 16 11 C -0.16 -2.90 8.04 -26.08 -0.21 -3.11 16 12 C 0.13 2.43 4.10 -72.40 -0.30 2.13 16 13 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 14 C 0.12 2.17 5.52 -4.04 -0.02 2.15 16 15 N -0.68 -12.30 5.32 -61.15 -0.33 -12.62 16 16 C 0.55 9.91 7.62 -12.18 -0.09 9.82 16 17 O -0.53 -10.38 11.27 5.36 0.06 -10.32 16 18 C 0.14 2.18 6.73 -83.01 -0.56 1.63 16 19 N -0.45 -6.21 9.54 -9.80 -0.09 -6.30 16 20 C 0.13 1.24 11.18 -17.56 -0.20 1.04 16 21 C -0.16 -1.18 10.11 -39.32 -0.40 -1.57 16 22 C -0.04 -0.34 9.53 -39.31 -0.37 -0.72 16 23 C -0.19 -2.53 5.41 -104.09 -0.56 -3.10 16 24 C 0.52 7.66 2.78 36.01 0.10 7.76 16 25 F -0.19 -2.31 16.06 2.25 0.04 -2.27 16 26 F -0.16 -2.60 15.02 2.25 0.03 -2.56 16 27 F -0.16 -2.72 15.01 2.25 0.03 -2.69 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.76 7.30 -51.93 -0.38 1.38 16 31 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 32 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.55 8.14 -51.92 -0.42 1.13 16 35 H 0.42 7.49 7.80 -40.82 -0.32 7.17 16 36 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 38 H 0.16 1.02 7.26 -52.48 -0.38 0.64 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -32.91 335.99 -7.14 -40.05 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.99 Total: 2.82 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: -2.93 Total: 13.32 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.42 Total: -60.50 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.06 Total: -10.32 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 0.10 Total: -7.52 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.91 -7.14 -40.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038875655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.743 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds