Wall clock time and date at job start Sat Apr 11 2020 02:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48494 * 109.47197 * 95.01032 * 3 2 1 5 5 H 1.48497 * 109.46819 * 215.01006 * 3 2 1 6 6 H 1.48507 * 109.46924 * 335.00976 * 3 2 1 7 7 C 1.38802 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00246 * 174.92327 * 7 2 1 9 9 N 1.36938 * 120.00063 * 354.92493 * 7 2 1 10 10 C 1.47060 * 136.05760 * 6.04677 * 9 7 2 11 11 C 1.53757 * 87.88857 * 152.96521 * 10 9 7 12 12 C 1.47067 * 136.05706 * 186.42095 * 9 7 2 13 13 H 1.09003 * 113.47306 * 92.30329 * 12 9 7 14 14 C 1.52999 * 113.46817 * 321.86166 * 12 9 7 15 15 N 1.46498 * 109.47409 * 74.50760 * 14 12 9 16 16 C 1.34779 * 120.00418 * 180.02562 * 15 14 12 17 17 O 1.21509 * 119.99557 * 359.97438 * 16 15 14 18 18 C 1.48166 * 119.99888 * 179.97438 * 16 15 14 19 19 N 1.32749 * 119.72268 * 359.72494 * 18 16 15 20 20 C 1.31497 * 121.63872 * 179.70915 * 19 18 16 21 21 C 1.38602 * 120.90269 * 0.56925 * 20 19 18 22 22 C 1.38581 * 119.35050 * 359.72144 * 21 20 19 23 23 C 1.38636 * 118.48876 * 359.97438 * 22 21 20 24 24 C 1.50707 * 120.46906 * 179.97438 * 23 22 21 25 25 F 1.39903 * 109.46695 * 0.02562 * 24 23 22 26 26 F 1.39896 * 109.46754 * 120.02277 * 24 23 22 27 27 F 1.39898 * 109.46877 * 240.02775 * 24 23 22 28 28 H 0.97005 * 119.99980 * 359.97438 * 1 2 3 29 29 H 1.09003 * 113.47161 * 267.69692 * 10 9 7 30 30 H 1.09003 * 113.47055 * 38.13660 * 10 9 7 31 31 H 1.09004 * 114.39720 * 272.67401 * 11 10 9 32 32 H 1.09008 * 114.26541 * 139.79526 * 11 10 9 33 33 H 1.08999 * 109.47457 * 194.50702 * 14 12 9 34 34 H 1.09008 * 109.47380 * 314.50825 * 14 12 9 35 35 H 0.97002 * 119.99534 * 359.97438 * 15 14 12 36 36 H 1.07999 * 119.54692 * 180.26403 * 20 19 18 37 37 H 1.07998 * 120.32503 * 179.74528 * 21 20 19 38 38 H 1.08003 * 120.75779 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6036 1.9853 1.3947 5 1 3.4908 1.4731 -0.8033 6 1 1.3986 2.6810 -0.5915 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2039 -0.0833 9 7 1.3296 -2.3857 0.1038 10 6 -0.0821 -2.7973 0.1226 11 6 0.3656 -4.1560 -0.4410 12 6 1.6886 -3.8041 0.2532 13 1 1.7351 -4.1332 1.2913 14 6 2.9253 -4.2076 -0.5522 15 7 4.1268 -3.6853 0.1034 16 6 5.3418 -3.9182 -0.4316 17 8 5.4405 -4.5619 -1.4575 18 6 6.5568 -3.3894 0.2311 19 7 6.4420 -2.6822 1.3487 20 6 7.4952 -2.1999 1.9711 21 6 8.7722 -2.4042 1.4724 22 6 8.9371 -3.1323 0.3048 23 6 7.8093 -3.6340 -0.3264 24 6 7.9369 -4.4313 -1.5989 25 9 9.2870 -4.5353 -1.9506 26 9 7.4063 -5.7108 -1.4025 27 9 7.2359 -3.7880 -2.6245 28 1 -0.4850 0.8401 0.0004 29 1 -0.5025 -2.8610 1.1263 30 1 -0.7097 -2.2271 -0.5624 31 1 0.4277 -4.1940 -1.5286 32 1 -0.1518 -5.0127 -0.0089 33 1 2.9847 -5.2946 -0.6067 34 1 2.8532 -3.7967 -1.5593 35 1 4.0479 -3.1711 0.9221 36 1 7.3630 -1.6326 2.8805 37 1 9.6304 -2.0004 1.9890 38 1 9.9217 -3.3056 -0.1036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038875655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:03 Heat of formation + Delta-G solvation = -102.445750 kcal Electronic energy + Delta-G solvation = -28733.803363 eV Core-core repulsion = 24162.984943 eV Total energy + Delta-G solvation = -4570.818420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.10657 -48.66581 -48.50260 -41.88978 -40.43175 -39.57277 -35.76045 -34.33264 -34.12735 -33.16908 -30.00119 -29.42974 -27.44444 -25.83295 -25.38647 -23.93585 -23.34392 -21.97104 -21.04904 -19.86589 -19.51182 -19.42026 -19.04154 -18.29613 -17.76243 -17.17393 -16.74147 -16.53718 -16.42417 -15.86954 -15.60409 -15.40993 -15.39741 -15.10994 -15.01224 -14.96815 -14.78293 -14.71710 -14.50230 -14.29903 -13.99918 -13.61303 -13.36136 -12.96836 -12.93866 -12.70648 -12.61042 -12.33425 -11.88811 -11.67271 -11.50906 -11.36703 -11.08054 -10.84935 -10.73834 -10.57254 -10.05960 -8.87732 -7.88763 -5.19347 -0.78234 -0.15884 1.42293 1.43882 1.51333 1.55833 1.57266 1.94614 2.46684 2.52314 2.63524 2.94815 3.03173 3.31938 3.40340 3.44091 3.57482 3.75069 3.83713 3.92777 4.08645 4.17476 4.30231 4.33244 4.60931 4.67692 4.71383 4.83877 4.87566 5.06154 5.08096 5.31538 5.33018 5.36550 5.58569 5.73043 5.96802 6.27709 6.57187 6.94170 6.99974 7.63840 8.64217 9.29265 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.004193 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.929098 B = 6675.589901 C = 7727.896902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.297 1.297 7 C -0.207 4.207 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.147 3.853 11 C -0.132 4.132 12 C 0.131 3.869 13 H 0.068 0.932 14 C 0.128 3.872 15 N -0.686 5.686 16 C 0.545 3.455 17 O -0.553 6.553 18 C 0.110 3.890 19 N -0.478 5.478 20 C 0.122 3.878 21 C -0.124 4.124 22 C -0.035 4.035 23 C -0.200 4.200 24 C 0.519 3.481 25 F -0.173 7.173 26 F -0.175 7.175 27 F -0.180 7.180 28 H 0.246 0.754 29 H 0.024 0.976 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.414 0.586 36 H 0.208 0.792 37 H 0.205 0.795 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.118 -8.417 5.332 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.207 1.207 5 H -0.204 1.204 6 H -0.224 1.224 7 C -0.335 4.335 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.021 3.979 11 C -0.171 4.171 12 C 0.025 3.975 13 H 0.085 0.915 14 C 0.004 3.996 15 N -0.335 5.335 16 C 0.329 3.671 17 O -0.432 6.432 18 C -0.028 4.028 19 N -0.189 5.189 20 C -0.037 4.037 21 C -0.143 4.143 22 C -0.061 4.061 23 C -0.205 4.205 24 C 0.464 3.536 25 F -0.155 7.155 26 F -0.157 7.157 27 F -0.161 7.161 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.251 0.749 36 H 0.225 0.775 37 H 0.222 0.778 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 19.332 -8.411 4.862 21.636 hybrid contribution 0.589 1.133 -0.339 1.322 sum 19.921 -7.277 4.523 21.686 Atomic orbital electron populations 1.70016 1.06239 1.25304 1.58466 1.25522 0.96416 1.00412 1.03685 0.85280 0.77434 0.80034 0.77768 1.20670 1.20401 1.22376 1.19109 0.90744 0.82660 1.40993 0.90194 1.45994 1.03687 1.01206 1.84572 1.22046 0.87606 0.91443 0.96816 1.23537 0.95495 0.97623 1.00441 1.22576 0.92845 0.84770 0.97316 0.91477 1.21752 0.83070 0.98616 0.96179 1.45781 1.05147 1.53869 1.28749 1.18318 0.83935 0.80549 0.84265 1.90826 1.86626 1.41473 1.24226 1.20799 0.91926 0.96618 0.93501 1.67785 1.36597 1.08020 1.06489 1.23923 0.87563 0.93218 0.98948 1.22973 1.00457 0.96095 0.94756 1.21969 0.98250 0.91819 0.94014 1.21092 0.96687 1.05250 0.97513 1.17890 0.73226 0.78271 0.84177 1.93152 1.32955 1.96240 1.93131 1.93200 1.86431 1.40954 1.95067 1.93216 1.79305 1.81525 1.62086 0.94497 0.95844 0.94796 0.90093 0.88069 0.89655 0.93455 0.74932 0.77529 0.77809 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.62 11.61 21.65 0.25 -57.37 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.97 46.28 29.56 68.60 2.03 48.31 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 7 C -0.21 -11.35 10.54 84.03 0.89 -10.47 16 8 H 0.08 4.30 7.61 -2.91 -0.02 4.27 16 9 N -0.63 -31.03 3.65 -713.45 -2.60 -33.64 16 10 C 0.15 6.77 7.33 83.26 0.61 7.38 16 11 C -0.13 -4.60 8.04 31.02 0.25 -4.35 16 12 C 0.13 4.97 4.10 41.78 0.17 5.14 16 13 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 14 C 0.13 4.68 5.52 86.38 0.48 5.16 16 15 N -0.69 -25.01 5.32 -465.66 -2.48 -27.49 16 16 C 0.54 19.99 7.62 86.88 0.66 20.65 16 17 O -0.55 -22.55 11.27 -3.74 -0.04 -22.59 16 18 C 0.11 3.32 6.73 41.89 0.28 3.60 16 19 N -0.48 -12.46 9.54 -184.91 -1.76 -14.23 16 20 C 0.12 1.87 11.18 84.83 0.95 2.82 16 21 C -0.12 -1.20 10.11 22.44 0.23 -0.97 16 22 C -0.04 -0.52 9.53 22.45 0.21 -0.31 16 23 C -0.20 -5.07 5.41 -19.52 -0.11 -5.18 16 24 C 0.52 15.07 2.78 71.24 0.20 15.27 16 25 F -0.17 -4.04 16.06 44.97 0.72 -3.31 16 26 F -0.18 -5.74 15.02 44.97 0.68 -5.06 16 27 F -0.18 -6.34 15.01 44.97 0.68 -5.66 16 28 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 29 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 30 H 0.03 1.78 7.30 -2.39 -0.02 1.77 16 31 H 0.08 2.82 8.12 -2.38 -0.02 2.80 16 32 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.41 15.06 7.80 -92.71 -0.72 14.34 16 36 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.20 -0.08 8.06 -2.91 -0.02 -0.10 16 38 H 0.19 1.56 7.26 -2.91 -0.02 1.54 16 Total: -1.00 -76.16 335.99 3.16 -73.00 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.40 Total: 12.68 kcal Atomic # 6 Polarization: 30.08 SS G_CDS: 5.29 Total: 35.36 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -6.59 Total: -132.72 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.04 Total: -22.59 kcal Atomic # 9 Polarization: -16.11 SS G_CDS: 2.07 Total: -14.04 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -76.16 3.16 -73.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038875655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.445 kcal (2) G-P(sol) polarization free energy of solvation -76.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds