Wall clock time and date at job start Sat Apr 11 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00310 * 2 1 4 4 H 1.48504 * 109.46953 * 270.00162 * 3 2 1 5 5 H 1.48495 * 109.47290 * 30.00302 * 3 2 1 6 6 H 1.48502 * 109.46867 * 150.00422 * 3 2 1 7 7 C 1.38812 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00235 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.47075 * 136.05839 * 359.95702 * 9 7 2 11 11 C 1.53494 * 87.98623 * 152.91107 * 10 9 7 12 12 C 1.47072 * 136.06036 * 180.02562 * 9 7 2 13 13 H 1.08994 * 113.47185 * 92.25010 * 12 9 7 14 14 C 1.52998 * 113.46653 * 321.86452 * 12 9 7 15 15 N 1.46505 * 109.46663 * 74.50451 * 14 12 9 16 16 C 1.34776 * 119.99834 * 179.97438 * 15 14 12 17 17 O 1.21561 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.47842 * 120.00438 * 180.02562 * 16 15 14 19 19 C 1.39563 * 120.55413 * 359.97438 * 18 16 15 20 20 N 1.31666 * 120.56582 * 179.97438 * 19 18 16 21 21 C 1.31962 * 121.87731 * 0.02808 * 20 19 18 22 22 C 1.38308 * 121.08127 * 359.73767 * 21 20 19 23 23 C 1.50696 * 120.34860 * 180.26835 * 22 21 20 24 24 F 1.39896 * 109.47044 * 270.22654 * 23 22 21 25 25 F 1.39897 * 109.47145 * 30.22669 * 23 22 21 26 26 F 1.39898 * 109.47247 * 150.22550 * 23 22 21 27 27 C 1.38399 * 119.30477 * 0.49282 * 22 21 20 28 28 H 0.97003 * 119.99706 * 0.02562 * 1 2 3 29 29 H 1.08996 * 113.46664 * 267.69350 * 10 9 7 30 30 H 1.09000 * 113.46335 * 38.12732 * 10 9 7 31 31 H 1.09005 * 114.20607 * 272.47979 * 11 10 9 32 32 H 1.09000 * 114.20910 * 139.65752 * 11 10 9 33 33 H 1.09006 * 109.47387 * 314.50742 * 14 12 9 34 34 H 1.08999 * 109.47472 * 194.50437 * 14 12 9 35 35 H 0.96992 * 120.00041 * 0.02562 * 15 14 12 36 36 H 1.08001 * 119.72155 * 0.02562 * 19 18 16 37 37 H 1.07997 * 119.45428 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.85871 * 179.80103 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.0879 -2.7948 0.0007 11 6 0.3409 -4.0919 -0.6991 12 6 1.6797 -3.8155 -0.0005 13 1 1.7462 -4.2463 0.9984 14 6 2.8979 -4.1409 -0.8672 15 7 4.1150 -3.6904 -0.1875 16 6 5.3178 -3.8738 -0.7673 17 8 5.3926 -4.4126 -1.8544 18 6 6.5462 -3.4197 -0.0813 19 6 6.4737 -2.7993 1.1667 20 7 7.5676 -2.3953 1.7781 21 6 8.7639 -2.5564 1.2449 22 6 8.9206 -3.1664 0.0136 23 6 10.2951 -3.3473 -0.5771 24 9 10.6216 -2.2277 -1.3498 25 9 11.2302 -3.4916 0.4533 26 9 10.3095 -4.4905 -1.3833 27 6 7.8014 -3.6047 -0.6726 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4928 -2.9541 1.0000 30 1 -0.7231 -2.1586 -0.6156 31 1 0.3807 -4.0212 -1.7861 32 1 -0.1737 -4.9838 -0.3417 33 1 2.8078 -3.6315 -1.8267 34 1 2.9503 -5.2172 -1.0308 35 1 4.0553 -3.2608 0.6800 36 1 5.5123 -2.6500 1.6355 37 1 9.6352 -2.2104 1.7811 38 1 7.8945 -4.0814 -1.6372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038879278.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:08 Heat of formation + Delta-G solvation = -107.808119 kcal Electronic energy + Delta-G solvation = -27612.599506 eV Core-core repulsion = 23041.548556 eV Total energy + Delta-G solvation = -4571.050950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.28883 -48.79590 -48.74916 -41.95708 -40.50063 -39.60469 -35.76556 -34.37974 -34.24497 -33.37779 -29.96932 -29.30335 -27.59105 -25.76723 -25.37196 -24.22456 -23.46085 -21.90838 -21.01840 -19.98866 -19.62307 -19.61455 -18.64044 -18.24073 -17.99038 -17.62881 -17.11457 -16.59254 -16.36504 -15.87160 -15.66825 -15.55865 -15.49467 -15.18607 -15.13094 -14.97000 -14.89132 -14.84004 -14.58287 -14.46214 -14.10250 -13.62103 -13.39035 -13.32382 -12.95267 -12.71888 -12.58779 -12.29391 -11.87690 -11.65624 -11.54997 -11.45832 -11.04968 -10.84929 -10.77074 -10.73924 -10.08958 -8.87353 -7.86239 -5.17472 -0.79308 -0.40327 1.40538 1.44848 1.46253 1.52926 1.56349 1.97834 2.40597 2.47032 2.48765 2.82394 3.02608 3.25581 3.35751 3.39677 3.43022 3.45411 3.60904 3.81043 3.95713 4.03596 4.18909 4.37195 4.51003 4.60664 4.66220 4.71977 4.89918 5.03168 5.08829 5.11759 5.32762 5.36098 5.61155 5.76833 5.98864 6.36480 6.42270 6.94599 7.01820 7.66201 8.65588 9.31428 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.003228 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.224810 B = 8672.478821 C = 9799.348924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.961 3.039 4 H -0.296 1.296 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.205 4.205 8 H 0.090 0.910 9 N -0.629 5.629 10 C 0.142 3.858 11 C -0.135 4.135 12 C 0.133 3.867 13 H 0.074 0.926 14 C 0.129 3.871 15 N -0.701 5.701 16 C 0.561 3.439 17 O -0.572 6.572 18 C -0.193 4.193 19 C 0.173 3.827 20 N -0.491 5.491 21 C 0.182 3.818 22 C -0.248 4.248 23 C 0.527 3.473 24 F -0.176 7.176 25 F -0.167 7.167 26 F -0.176 7.176 27 C 0.030 3.970 28 H 0.244 0.756 29 H 0.023 0.977 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.409 0.591 36 H 0.184 0.816 37 H 0.203 0.797 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.834 -10.193 2.956 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.791 3.209 4 H -0.223 1.223 5 H -0.225 1.225 6 H -0.189 1.189 7 C -0.333 4.333 8 H 0.108 0.892 9 N -0.355 5.355 10 C 0.016 3.984 11 C -0.173 4.173 12 C 0.027 3.973 13 H 0.091 0.909 14 C 0.004 3.996 15 N -0.350 5.350 16 C 0.348 3.652 17 O -0.453 6.453 18 C -0.198 4.198 19 C 0.016 3.984 20 N -0.199 5.199 21 C 0.024 3.976 22 C -0.252 4.252 23 C 0.472 3.528 24 F -0.157 7.157 25 F -0.148 7.148 26 F -0.157 7.157 27 C 0.004 3.996 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.246 0.754 36 H 0.201 0.799 37 H 0.220 0.780 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 17.857 -9.822 3.016 20.602 hybrid contribution 0.181 1.093 -0.628 1.274 sum 18.038 -8.729 2.387 20.181 Atomic orbital electron populations 1.69999 1.06296 1.25116 1.58820 1.25469 0.96310 1.00348 1.03980 0.85326 0.78097 0.80415 0.77068 1.22340 1.22540 1.18872 1.19189 0.90597 0.82371 1.41167 0.89247 1.45998 1.03628 1.00027 1.85880 1.22050 0.87848 0.92146 0.96378 1.23488 0.95805 0.98055 0.99993 1.22593 0.92852 0.84684 0.97160 0.90868 1.21725 0.82594 0.99481 0.95758 1.45845 1.05568 1.60100 1.23524 1.18095 0.83583 0.78760 0.84775 1.90763 1.87335 1.45316 1.21879 1.20888 0.94137 1.06497 0.98309 1.23602 0.98747 0.86797 0.89274 1.68043 0.98497 1.18550 1.34769 1.23394 0.96859 0.87781 0.89521 1.21032 0.92975 1.10710 1.00484 1.17770 0.85055 0.73997 0.75988 1.93254 1.93622 1.52607 1.76203 1.93221 1.67768 1.95461 1.58360 1.93221 1.96803 1.51232 1.74491 1.21571 0.89767 0.89388 0.98878 0.94661 0.95895 0.94766 0.90265 0.88201 0.93449 0.89543 0.75399 0.79906 0.78010 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.89 11.51 21.65 0.25 -55.64 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.96 44.42 29.55 68.60 2.03 46.45 16 4 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.20 -10.36 10.55 84.03 0.89 -9.48 16 8 H 0.09 4.20 7.50 -2.91 -0.02 4.18 16 9 N -0.63 -28.51 3.65 -713.79 -2.61 -31.12 16 10 C 0.14 6.15 7.39 83.18 0.61 6.76 16 11 C -0.13 -4.28 8.03 30.93 0.25 -4.03 16 12 C 0.13 4.42 4.10 41.80 0.17 4.59 16 13 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 14 C 0.13 4.01 5.52 86.38 0.48 4.49 16 15 N -0.70 -20.21 5.29 -465.96 -2.46 -22.67 16 16 C 0.56 16.70 7.78 86.79 0.68 17.38 16 17 O -0.57 -20.59 16.42 -3.91 -0.06 -20.66 16 18 C -0.19 -4.67 5.89 -19.99 -0.12 -4.79 16 19 C 0.17 3.74 10.71 85.04 0.91 4.65 16 20 N -0.49 -10.28 10.35 -194.75 -2.01 -12.29 16 21 C 0.18 3.08 10.56 84.69 0.89 3.98 16 22 C -0.25 -4.55 5.46 -19.81 -0.11 -4.66 16 23 C 0.53 9.01 3.37 71.23 0.24 9.25 16 24 F -0.18 -3.30 17.30 44.97 0.78 -2.52 16 25 F -0.17 -2.56 16.48 44.97 0.74 -1.82 16 26 F -0.18 -3.31 16.53 44.97 0.74 -2.56 16 27 C 0.03 0.66 9.06 22.73 0.21 0.87 16 28 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.03 1.73 7.12 -2.39 -0.02 1.72 16 31 H 0.08 2.56 8.12 -2.38 -0.02 2.54 16 32 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.41 10.73 6.44 -92.71 -0.60 10.13 16 36 H 0.18 3.43 6.42 -2.91 -0.02 3.42 16 37 H 0.20 2.10 7.61 -2.91 -0.02 2.08 16 38 H 0.16 3.50 7.36 -2.91 -0.02 3.47 16 Total: -1.00 -67.13 341.93 3.49 -63.64 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.54 Total: 13.42 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 5.57 Total: 25.77 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -6.84 Total: -121.72 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.66 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 2.26 Total: -6.90 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.13 3.49 -63.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038879278.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.169 kcal (2) G-P(sol) polarization free energy of solvation -67.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds