Wall clock time and date at job start Sat Apr 11 2020 02:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47032 * 106.65467 * 3 2 1 5 5 N 1.46894 * 109.47151 * 179.66118 * 4 3 2 6 6 C 1.46903 * 111.00153 * 61.14801 * 5 4 3 7 7 C 1.50703 * 109.46910 * 66.04294 * 6 5 4 8 8 H 1.08000 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99798 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99947 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99789 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47143 * 90.00074 * 11 9 7 13 13 H 1.48500 * 109.47157 * 209.99781 * 11 9 7 14 14 H 1.48494 * 109.47176 * 329.99743 * 11 9 7 15 15 C 1.46898 * 111.00253 * 297.19315 * 5 4 3 16 16 C 1.50706 * 109.47073 * 288.25329 * 15 5 4 17 17 C 1.39336 * 119.12406 * 95.44270 * 16 15 5 18 18 C 1.36576 * 119.93376 * 179.97438 * 17 16 15 19 19 C 1.40775 * 118.14794 * 359.97438 * 18 17 16 20 20 C 1.40439 * 121.38203 * 180.02562 * 19 18 17 21 21 C 1.36139 * 119.64189 * 179.97438 * 20 19 18 22 22 C 1.39332 * 120.88631 * 0.02562 * 21 20 19 23 23 C 1.36180 * 121.05286 * 359.97438 * 22 21 20 24 24 Cl 1.73599 * 120.14067 * 179.97438 * 23 22 21 25 25 C 1.40710 * 119.72015 * 0.02562 * 23 22 21 26 26 N 1.31077 * 119.13003 * 275.17118 * 16 15 5 27 27 H 1.09003 * 109.47128 * 346.65627 * 3 2 1 28 28 H 1.09001 * 109.47001 * 226.65389 * 3 2 1 29 29 H 1.09006 * 109.47011 * 59.66384 * 4 3 2 30 30 H 1.09004 * 109.47203 * 299.66693 * 4 3 2 31 31 H 1.08995 * 109.46801 * 306.04839 * 6 5 4 32 32 H 1.08994 * 109.47511 * 186.04326 * 6 5 4 33 33 H 0.97000 * 120.00369 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47262 * 48.25595 * 15 5 4 35 35 H 1.08999 * 109.47090 * 168.25315 * 15 5 4 36 36 H 1.07997 * 120.03528 * 359.95854 * 17 16 15 37 37 H 1.07994 * 120.92595 * 179.97438 * 18 17 16 38 38 H 1.08003 * 120.17363 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.55497 * 180.02562 * 21 20 19 40 40 H 1.08007 * 119.47454 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1179 0.4143 -1.3820 5 7 4.5868 0.4228 -1.3797 6 6 5.1206 -0.9140 -1.0864 7 6 4.7692 -1.8531 -2.2115 8 1 4.2060 -1.4927 -3.0597 9 6 5.1666 -3.1723 -2.1580 10 7 5.8519 -3.6111 -1.1249 11 14 4.7317 -4.3361 -3.5529 12 1 5.8106 -4.3111 -4.5730 13 1 4.5859 -5.7146 -3.0202 14 1 3.4528 -3.9078 -4.1743 15 6 5.1060 1.4167 -0.4308 16 6 4.8634 2.8023 -0.9717 17 6 3.7287 3.5005 -0.5636 18 6 3.4929 4.7575 -1.0430 19 6 4.4215 5.3089 -1.9460 20 6 4.2462 6.5957 -2.4805 21 6 5.1668 7.0945 -3.3507 22 6 6.2819 6.3450 -3.7196 23 6 6.4837 5.0939 -3.2210 24 17 7.8811 4.1806 -3.6973 25 6 5.5541 4.5441 -2.3190 26 7 5.7281 3.3208 -1.8093 27 1 2.9719 -0.9991 0.2372 28 1 2.9711 0.7062 0.7473 29 1 2.7491 1.4117 -1.6217 30 1 2.7597 -0.2946 -2.1285 31 1 4.6868 -1.2825 -0.1568 32 1 6.2043 -0.8583 -0.9848 33 1 6.1318 -4.5391 -1.0873 34 1 4.5966 1.3060 0.5265 35 1 6.1762 1.2628 -0.2927 36 1 3.0363 3.0482 0.1308 37 1 2.6184 5.3128 -0.7379 38 1 3.3858 7.1864 -2.2027 39 1 5.0308 8.0844 -3.7606 40 1 6.9982 6.7632 -4.4114 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137229001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:22 Heat of formation + Delta-G solvation = 81.335505 kcal Electronic energy + Delta-G solvation = -24602.681093 eV Core-core repulsion = 21022.397932 eV Total energy + Delta-G solvation = -3580.283162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97034 -38.37774 -37.08586 -36.33982 -35.87159 -33.39135 -32.74590 -31.44381 -30.34893 -29.86965 -27.67492 -25.70476 -24.21878 -23.69948 -22.42775 -22.08592 -19.94297 -18.35913 -17.51004 -17.41010 -16.61961 -16.14790 -15.47545 -15.09046 -14.88625 -14.71427 -14.58612 -14.35611 -13.93998 -13.70107 -13.60513 -13.42710 -12.97869 -12.38855 -12.30631 -12.13911 -12.10596 -12.03707 -11.72988 -11.56323 -11.52855 -11.19835 -11.11313 -10.79800 -10.73012 -10.64929 -10.36917 -10.21746 -9.95058 -9.45783 -9.25319 -8.84387 -8.48097 -8.24969 -7.44077 -6.08206 -4.09294 0.21139 0.66523 1.81956 2.14762 2.73308 3.02423 3.05213 3.31547 3.38176 3.41294 3.91689 4.08577 4.27382 4.40903 4.45479 4.54000 4.72302 4.73525 4.90572 5.01242 5.09135 5.17921 5.28613 5.32357 5.40345 5.46236 5.62683 5.70907 5.75352 5.81649 5.92049 6.00567 6.04044 6.17736 6.20138 6.34507 6.53676 6.64176 7.12299 7.15804 7.69784 7.80674 7.93559 8.02725 8.03673 8.40044 8.97552 9.55639 11.02220 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.003788 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.745463 B = 7390.840634 C = 9204.086587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.224 3.776 3 C -0.076 4.076 4 C 0.069 3.931 5 N -0.515 5.515 6 C 0.189 3.811 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.059 3.941 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.088 3.912 16 C 0.188 3.812 17 C -0.160 4.160 18 C -0.062 4.062 19 C -0.101 4.101 20 C -0.091 4.091 21 C -0.116 4.116 22 C -0.100 4.100 23 C -0.009 4.009 24 Cl -0.042 7.042 25 C 0.136 3.864 26 N -0.441 5.441 27 H 0.126 0.874 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.003 0.997 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 21.307 0.816 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.062 4.062 5 N -0.238 5.238 6 C 0.065 3.935 7 C -0.547 4.547 8 H 0.082 0.918 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.722 3.278 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.041 4.041 16 C 0.035 3.965 17 C -0.180 4.180 18 C -0.088 4.088 19 C -0.103 4.103 20 C -0.110 4.110 21 C -0.134 4.134 22 C -0.121 4.121 23 C -0.037 4.037 24 Cl -0.012 7.012 25 C 0.013 3.987 26 N -0.149 5.149 27 H 0.143 0.857 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.021 0.979 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.241 20.759 0.054 20.796 hybrid contribution -0.626 -0.580 0.251 0.889 sum -1.867 20.179 0.304 20.267 Atomic orbital electron populations 1.81154 1.13164 1.09900 1.09549 1.29264 0.95250 0.92368 0.92504 1.20272 0.81582 1.06676 1.03248 1.22133 0.89224 1.01206 0.93629 1.62327 1.04723 1.08735 1.47967 1.19902 0.95899 0.81653 0.96090 1.21105 1.35107 0.93266 1.05252 0.91795 1.24923 0.95171 0.98205 0.95926 1.69930 1.38016 1.16207 1.29422 0.86553 0.78920 0.79997 0.82307 1.20598 1.21366 1.19874 1.21154 1.02614 0.86884 0.93399 1.21619 0.88820 0.95885 0.90226 1.21883 0.98802 0.95457 1.01838 1.21381 0.97752 0.95231 0.94395 1.18732 0.96083 0.95815 0.99704 1.21032 0.99344 0.94000 0.96645 1.20763 0.93999 1.00221 0.98406 1.20803 0.98657 0.92560 1.00062 1.20569 0.91041 0.93377 0.98702 1.98397 1.38470 1.74232 1.90126 1.18565 0.92696 0.91209 0.96264 1.67996 1.29510 1.09168 1.08240 0.85670 0.88280 0.92052 0.88732 0.97949 0.94507 0.92848 0.92957 0.88665 0.84513 0.84266 0.84998 0.84937 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.91 18.54 42.16 0.78 -7.13 16 2 C 0.22 3.37 15.43 -20.76 -0.32 3.05 16 3 C -0.08 -1.04 5.06 -29.52 -0.15 -1.19 16 4 C 0.07 1.10 4.90 -3.83 -0.02 1.08 16 5 N -0.51 -9.45 4.65 -237.52 -1.10 -10.56 16 6 C 0.19 4.24 4.49 -4.97 -0.02 4.22 16 7 C -0.51 -13.07 8.50 -34.44 -0.29 -13.36 16 8 H 0.06 1.66 7.11 -52.49 -0.37 1.29 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -24.96 13.29 55.43 0.74 -24.23 16 11 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.09 1.33 5.14 -4.97 -0.03 1.31 16 16 C 0.19 2.73 5.81 -82.50 -0.48 2.25 16 17 C -0.16 -1.82 8.32 -39.77 -0.33 -2.15 16 18 C -0.06 -0.64 9.90 -39.22 -0.39 -1.02 16 19 C -0.10 -1.19 5.74 -106.80 -0.61 -1.80 16 20 C -0.09 -0.82 9.77 -39.51 -0.39 -1.20 16 21 C -0.12 -0.96 9.95 -39.93 -0.40 -1.36 16 22 C -0.10 -1.00 9.71 -39.91 -0.39 -1.39 16 23 C -0.01 -0.12 6.33 -39.39 -0.25 -0.37 16 24 Cl -0.04 -0.58 28.52 -51.86 -1.48 -2.06 16 25 C 0.14 1.96 6.60 -84.83 -0.56 1.40 16 26 N -0.44 -7.19 9.72 -7.20 -0.07 -7.26 16 27 H 0.13 1.94 6.32 -51.93 -0.33 1.61 16 28 H 0.10 1.06 6.22 -51.93 -0.32 0.74 16 29 H 0.06 0.89 6.45 -51.93 -0.33 0.55 16 30 H 0.09 1.73 6.83 -51.93 -0.35 1.38 16 31 H 0.00 0.06 6.04 -51.93 -0.31 -0.25 16 32 H 0.04 0.92 7.86 -51.93 -0.41 0.51 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.05 0.64 5.75 -51.93 -0.30 0.35 16 35 H 0.10 1.55 7.81 -51.93 -0.41 1.14 16 36 H 0.14 1.24 8.05 -52.49 -0.42 0.82 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -30.93 355.68 -9.90 -40.83 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.39 Total: -1.86 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -4.72 Total: -9.05 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.34 Total: -49.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.48 Total: -2.06 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.93 -9.90 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137229001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.169 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds