Wall clock time and date at job start Sat Apr 11 2020 02:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47032 * 106.65467 * 3 2 1 5 5 N 1.46894 * 109.47151 * 179.66118 * 4 3 2 6 6 C 1.46903 * 111.00153 * 61.14801 * 5 4 3 7 7 C 1.50703 * 109.46910 * 66.04294 * 6 5 4 8 8 H 1.08000 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99798 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99947 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99789 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47143 * 90.00074 * 11 9 7 13 13 H 1.48500 * 109.47157 * 209.99781 * 11 9 7 14 14 H 1.48494 * 109.47176 * 329.99743 * 11 9 7 15 15 C 1.46898 * 111.00253 * 297.19315 * 5 4 3 16 16 C 1.50706 * 109.47073 * 288.25329 * 15 5 4 17 17 C 1.39336 * 119.12406 * 95.44270 * 16 15 5 18 18 C 1.36576 * 119.93376 * 179.97438 * 17 16 15 19 19 C 1.40775 * 118.14794 * 359.97438 * 18 17 16 20 20 C 1.40439 * 121.38203 * 180.02562 * 19 18 17 21 21 C 1.36139 * 119.64189 * 179.97438 * 20 19 18 22 22 C 1.39332 * 120.88631 * 0.02562 * 21 20 19 23 23 C 1.36180 * 121.05286 * 359.97438 * 22 21 20 24 24 Cl 1.73599 * 120.14067 * 179.97438 * 23 22 21 25 25 C 1.40710 * 119.72015 * 0.02562 * 23 22 21 26 26 N 1.31077 * 119.13003 * 275.17118 * 16 15 5 27 27 H 1.09003 * 109.47128 * 346.65627 * 3 2 1 28 28 H 1.09001 * 109.47001 * 226.65389 * 3 2 1 29 29 H 1.09006 * 109.47011 * 59.66384 * 4 3 2 30 30 H 1.09004 * 109.47203 * 299.66693 * 4 3 2 31 31 H 1.08995 * 109.46801 * 306.04839 * 6 5 4 32 32 H 1.08994 * 109.47511 * 186.04326 * 6 5 4 33 33 H 0.97000 * 120.00369 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47262 * 48.25595 * 15 5 4 35 35 H 1.08999 * 109.47090 * 168.25315 * 15 5 4 36 36 H 1.07997 * 120.03528 * 359.95854 * 17 16 15 37 37 H 1.07994 * 120.92595 * 179.97438 * 18 17 16 38 38 H 1.08003 * 120.17363 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.55497 * 180.02562 * 21 20 19 40 40 H 1.08007 * 119.47454 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1179 0.4143 -1.3820 5 7 4.5868 0.4228 -1.3797 6 6 5.1206 -0.9140 -1.0864 7 6 4.7692 -1.8531 -2.2115 8 1 4.2060 -1.4927 -3.0597 9 6 5.1666 -3.1723 -2.1580 10 7 5.8519 -3.6111 -1.1249 11 14 4.7317 -4.3361 -3.5529 12 1 5.8106 -4.3111 -4.5730 13 1 4.5859 -5.7146 -3.0202 14 1 3.4528 -3.9078 -4.1743 15 6 5.1060 1.4167 -0.4308 16 6 4.8634 2.8023 -0.9717 17 6 3.7287 3.5005 -0.5636 18 6 3.4929 4.7575 -1.0430 19 6 4.4215 5.3089 -1.9460 20 6 4.2462 6.5957 -2.4805 21 6 5.1668 7.0945 -3.3507 22 6 6.2819 6.3450 -3.7196 23 6 6.4837 5.0939 -3.2210 24 17 7.8811 4.1806 -3.6973 25 6 5.5541 4.5441 -2.3190 26 7 5.7281 3.3208 -1.8093 27 1 2.9719 -0.9991 0.2372 28 1 2.9711 0.7062 0.7473 29 1 2.7491 1.4117 -1.6217 30 1 2.7597 -0.2946 -2.1285 31 1 4.6868 -1.2825 -0.1568 32 1 6.2043 -0.8583 -0.9848 33 1 6.1318 -4.5391 -1.0873 34 1 4.5966 1.3060 0.5265 35 1 6.1762 1.2628 -0.2927 36 1 3.0363 3.0482 0.1308 37 1 2.6184 5.3128 -0.7379 38 1 3.3858 7.1864 -2.2027 39 1 5.0308 8.0844 -3.7606 40 1 6.9982 6.7632 -4.4114 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137229001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:21 Heat of formation + Delta-G solvation = 63.089364 kcal Electronic energy + Delta-G solvation = -24603.472306 eV Core-core repulsion = 21022.397932 eV Total energy + Delta-G solvation = -3581.074374 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.84355 -39.57817 -38.11396 -37.35614 -37.09632 -34.69322 -34.24473 -32.48481 -31.57753 -30.76448 -29.17665 -27.07203 -25.52488 -24.73811 -23.59321 -22.97619 -21.34795 -19.27579 -18.66476 -18.35518 -18.18439 -17.35092 -16.92727 -16.31958 -15.92458 -15.79815 -15.64371 -15.53069 -15.10120 -14.94824 -14.76449 -14.35149 -14.16803 -13.82224 -13.52190 -13.41401 -13.33103 -12.97400 -12.93227 -12.79636 -12.73945 -12.61522 -12.46035 -12.36062 -12.23015 -11.87829 -11.72647 -11.53864 -11.26106 -11.16182 -10.52805 -10.32489 -9.70630 -9.09160 -8.89260 -8.13186 -6.19257 -0.59184 -0.18063 0.99024 1.24417 1.42866 1.45096 1.53581 1.79446 1.83174 1.92949 2.44697 2.95566 3.07194 3.21318 3.21712 3.55623 3.72550 3.76720 3.95491 4.00628 4.14914 4.23210 4.23915 4.32977 4.39423 4.54472 4.55926 4.67615 4.85078 4.91557 4.96622 5.01643 5.08487 5.19676 5.25076 5.39637 5.40707 5.44252 5.58624 5.73375 5.85531 6.13954 6.37098 6.60996 6.67508 6.95788 7.08716 7.49114 8.96541 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.003788 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.745463 B = 7390.840634 C = 9204.086587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.246 3.754 3 C -0.062 4.062 4 C 0.075 3.925 5 N -0.531 5.531 6 C 0.205 3.795 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.012 3.988 10 N -0.927 5.927 11 Si 0.949 3.051 12 H -0.281 1.281 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.092 3.908 16 C 0.171 3.829 17 C -0.168 4.168 18 C -0.048 4.048 19 C -0.115 4.115 20 C -0.082 4.082 21 C -0.112 4.112 22 C -0.088 4.088 23 C -0.046 4.046 24 Cl -0.069 7.069 25 C 0.106 3.894 26 N -0.488 5.488 27 H 0.109 0.891 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 24.377 0.981 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.071 4.071 3 C -0.104 4.104 4 C -0.055 4.055 5 N -0.253 5.253 6 C 0.079 3.921 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.186 4.186 10 N -0.568 5.568 11 Si 0.775 3.225 12 H -0.207 1.207 13 H -0.209 1.209 14 H -0.193 1.193 15 C -0.036 4.036 16 C 0.018 3.982 17 C -0.188 4.188 18 C -0.073 4.073 19 C -0.117 4.117 20 C -0.100 4.100 21 C -0.130 4.130 22 C -0.108 4.108 23 C -0.074 4.074 24 Cl -0.040 7.040 25 C -0.017 4.017 26 N -0.196 5.196 27 H 0.127 0.873 28 H 0.156 0.844 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.181 0.819 37 H 0.199 0.801 38 H 0.189 0.811 39 H 0.190 0.810 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.533 23.848 0.214 24.109 hybrid contribution 0.096 -1.339 0.148 1.350 sum -3.436 22.509 0.362 22.773 Atomic orbital electron populations 1.81183 1.14150 1.11083 1.10688 1.29286 0.95105 0.91277 0.91410 1.20176 0.80666 1.06762 1.02796 1.22006 0.87663 1.01639 0.94216 1.62087 1.06230 1.07141 1.49888 1.19505 0.93919 0.83617 0.95052 1.21432 1.34224 0.93970 1.05736 0.92554 1.25613 0.95355 0.99776 0.97887 1.70025 1.39283 1.16475 1.31000 0.85688 0.78645 0.78328 0.79793 1.20712 1.20938 1.19335 1.21125 1.01431 0.86900 0.94161 1.21533 0.90226 0.95510 0.90932 1.22046 0.98099 0.96078 1.02577 1.21864 0.98134 0.94719 0.92630 1.19096 0.95483 0.96917 1.00252 1.21509 1.00333 0.92808 0.95386 1.21245 0.92648 1.01449 0.97672 1.21203 0.99402 0.91228 0.98982 1.20843 0.91040 0.94726 1.00782 1.98373 1.39985 1.75208 1.90467 1.18903 0.94356 0.91272 0.97170 1.67862 1.31173 1.10889 1.09725 0.87270 0.84417 0.89922 0.91590 0.97873 0.97895 0.92890 0.89719 0.91096 0.81874 0.80113 0.81076 0.80971 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.17 18.54 20.01 0.37 -15.80 16 2 C 0.25 6.96 15.43 89.44 1.38 8.34 16 3 C -0.06 -1.60 5.06 28.79 0.15 -1.46 16 4 C 0.07 2.34 4.90 86.30 0.42 2.77 16 5 N -0.53 -19.85 4.65 -905.38 -4.21 -24.06 16 6 C 0.20 9.55 4.49 85.56 0.38 9.93 16 7 C -0.52 -27.24 8.50 25.60 0.22 -27.02 16 8 H 0.06 3.01 7.11 -2.91 -0.02 2.99 16 9 C 0.01 0.67 5.46 84.66 0.46 1.13 16 10 N -0.93 -52.91 13.29 21.45 0.28 -52.62 16 11 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 15 C 0.09 2.80 5.14 85.56 0.44 3.24 16 16 C 0.17 4.88 5.81 42.94 0.25 5.13 16 17 C -0.17 -3.37 8.32 22.15 0.18 -3.19 16 18 C -0.05 -0.80 9.90 22.50 0.22 -0.58 16 19 C -0.12 -2.38 5.74 -21.28 -0.12 -2.51 16 20 C -0.08 -1.09 9.77 22.32 0.22 -0.87 16 21 C -0.11 -1.39 9.95 22.04 0.22 -1.17 16 22 C -0.09 -1.58 9.71 22.05 0.21 -1.37 16 23 C -0.05 -1.23 6.33 22.39 0.14 -1.09 16 24 Cl -0.07 -2.06 28.52 -2.72 -0.08 -2.14 16 25 C 0.11 3.02 6.60 40.31 0.27 3.29 16 26 N -0.49 -16.32 9.72 -176.69 -1.72 -18.03 16 27 H 0.11 3.30 6.32 -2.39 -0.02 3.29 16 28 H 0.14 2.48 6.22 -2.39 -0.01 2.47 16 29 H 0.08 2.25 6.45 -2.38 -0.02 2.24 16 30 H 0.07 2.44 6.83 -2.39 -0.02 2.43 16 31 H 0.00 0.17 6.04 -2.39 -0.01 0.15 16 32 H 0.00 0.15 7.86 -2.39 -0.02 0.14 16 33 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.09 1.95 5.75 -2.39 -0.01 1.93 16 35 H 0.07 2.47 7.81 -2.39 -0.02 2.45 16 36 H 0.16 2.26 8.05 -2.91 -0.02 2.24 16 37 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 38 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 40 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -71.82 355.68 2.81 -69.01 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 1.09 Total: 3.32 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 5.05 Total: -5.42 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -5.27 Total: -110.52 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -71.82 2.81 -69.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137229001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.098 kcal (2) G-P(sol) polarization free energy of solvation -71.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds