Wall clock time and date at job start Sat Apr 11 2020 02:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47343 * 2 1 4 4 C 1.34225 * 117.00237 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99690 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00387 * 180.02562 * 4 3 2 7 7 N 1.46900 * 109.47289 * 180.02562 * 6 4 3 8 8 C 1.46904 * 111.00199 * 66.04108 * 7 6 4 9 9 C 1.50697 * 109.47158 * 199.59436 * 8 7 6 10 10 H 1.08004 * 120.00160 * 355.33183 * 9 8 7 11 11 C 1.37877 * 120.00215 * 175.33730 * 9 8 7 12 12 N 1.31512 * 120.00060 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99532 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47045 * 90.00583 * 13 11 9 15 15 H 1.48503 * 109.46902 * 210.00001 * 13 11 9 16 16 H 1.48497 * 109.47294 * 329.99968 * 13 11 9 17 17 C 1.46896 * 111.00124 * 189.99671 * 7 6 4 18 18 C 1.50700 * 109.47053 * 67.20370 * 17 7 6 19 19 C 1.38215 * 119.99077 * 254.43763 * 18 17 7 20 20 C 1.38435 * 119.98252 * 179.78968 * 19 18 17 21 21 F 1.35102 * 120.01066 * 180.25551 * 20 19 18 22 22 C 1.38484 * 119.97933 * 0.48813 * 20 19 18 23 23 C 1.38168 * 119.98492 * 359.74502 * 22 20 19 24 24 C 1.38325 * 119.99699 * 74.71672 * 18 17 7 25 25 Cl 1.73603 * 119.98660 * 359.97438 * 24 18 17 26 26 H 1.08991 * 109.47465 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47301 * 300.00655 * 1 2 3 28 28 H 1.09005 * 109.46847 * 60.00091 * 1 2 3 29 29 H 1.08994 * 109.47237 * 239.99579 * 2 1 3 30 30 H 1.09004 * 109.46635 * 119.99402 * 2 1 3 31 31 H 1.08992 * 109.47392 * 59.99374 * 6 4 3 32 32 H 1.09008 * 109.46591 * 299.99371 * 6 4 3 33 33 H 1.08997 * 109.46958 * 319.59538 * 8 7 6 34 34 H 1.08994 * 109.47091 * 79.59357 * 8 7 6 35 35 H 0.97002 * 119.99387 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.47239 * 187.20525 * 17 7 6 37 37 H 1.09000 * 109.47436 * 307.20248 * 17 7 6 38 38 H 1.07999 * 120.00682 * 0.02562 * 19 18 17 39 39 H 1.07994 * 120.00872 * 179.72860 * 22 20 19 40 40 H 1.07990 * 119.99167 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 7 5.3878 2.8604 0.0010 8 6 5.8844 2.2772 -1.2525 9 6 7.2895 1.7718 -1.0495 10 1 7.7935 1.9405 -0.1093 11 6 7.9317 1.0940 -2.0640 12 7 9.1581 0.6534 -1.8870 13 14 7.0596 0.8017 -3.6900 14 1 7.3342 1.9348 -4.6096 15 1 7.5546 -0.4598 -4.2973 16 1 5.5970 0.6975 -3.4555 17 6 5.9843 4.1814 0.2397 18 6 5.6734 4.6264 1.6455 19 6 4.7251 5.6075 1.8658 20 6 4.4365 6.0131 3.1576 21 9 3.5060 6.9684 3.3739 22 6 5.1053 5.4427 4.2277 23 6 6.0565 4.4654 4.0059 24 6 6.3411 4.0570 2.7148 25 17 7.5367 2.8294 2.4368 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.5846 3.4692 0.8910 32 1 3.5853 3.4697 -0.8889 33 1 5.2398 1.4497 -1.5486 34 1 5.8811 3.0377 -2.0334 35 1 9.6096 0.1763 -2.6007 36 1 7.0646 4.1214 0.1081 37 1 5.5715 4.8998 -0.4685 38 1 4.2068 6.0549 1.0307 39 1 4.8837 5.7618 5.2353 40 1 6.5784 4.0208 4.8403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138674704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:30 Heat of formation + Delta-G solvation = -98.192900 kcal Electronic energy + Delta-G solvation = -26194.112448 eV Core-core repulsion = 22142.982374 eV Total energy + Delta-G solvation = -4051.130073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.96566 -40.16451 -39.32796 -37.03905 -35.89588 -35.71575 -32.59369 -31.85708 -31.54036 -30.22471 -28.77973 -27.21811 -24.57219 -23.02604 -22.82335 -21.66848 -21.15920 -19.89463 -17.46471 -17.27110 -16.95077 -16.53788 -16.42203 -16.30682 -15.90838 -15.66407 -14.93924 -14.49063 -14.17362 -13.99623 -13.86784 -13.64572 -13.32060 -12.86053 -12.82186 -12.74927 -12.44477 -12.30325 -12.17353 -11.91406 -11.50759 -11.47488 -11.35690 -11.18960 -10.91551 -10.69661 -10.48889 -10.30686 -10.12906 -9.93434 -9.69839 -9.21931 -9.01388 -8.48428 -8.37591 -7.59239 -5.95851 -3.90632 1.00835 1.07256 2.57668 2.69740 2.85413 3.31502 3.39627 3.42091 3.43123 4.12255 4.49391 4.53828 4.68376 4.73896 4.93898 4.94319 5.00933 5.08927 5.21099 5.30986 5.36405 5.44549 5.50289 5.61810 5.67775 5.71823 5.73449 5.75391 5.90833 5.96825 6.01975 6.24702 6.36150 6.68985 6.70940 6.79542 6.82415 7.57798 7.75696 7.85472 8.27331 8.71343 9.18375 9.66413 11.17260 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.008497 B = 0.005538 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.446958 B = 5055.119749 C = 7255.076895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.371 6.371 4 C 0.451 3.549 5 O -0.462 6.462 6 C 0.060 3.940 7 N -0.500 5.500 8 C 0.157 3.843 9 C -0.495 4.495 10 H 0.093 0.907 11 C 0.069 3.931 12 N -0.901 5.901 13 Si 0.868 3.132 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.270 1.270 17 C 0.097 3.903 18 C -0.040 4.040 19 C -0.144 4.144 20 C 0.093 3.907 21 F -0.141 7.141 22 C -0.148 4.148 23 C -0.090 4.090 24 C -0.025 4.025 25 Cl -0.019 7.019 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.043 0.957 34 H -0.016 1.016 35 H 0.261 0.739 36 H 0.114 0.886 37 H 0.042 0.958 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.580 8.308 9.204 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.291 3.709 5 O -0.344 6.344 6 C -0.070 4.070 7 N -0.225 5.225 8 C 0.032 3.968 9 C -0.534 4.534 10 H 0.111 0.889 11 C -0.131 4.131 12 N -0.541 5.541 13 Si 0.696 3.304 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.195 1.195 17 C -0.030 4.030 18 C -0.042 4.042 19 C -0.163 4.163 20 C 0.073 3.927 21 F -0.120 7.120 22 C -0.167 4.167 23 C -0.108 4.108 24 C -0.053 4.053 25 Cl 0.011 6.989 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.002 0.998 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.060 0.940 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.995 7.460 9.448 17.714 hybrid contribution -0.768 0.157 -1.545 1.732 sum -13.762 7.617 7.902 17.603 Atomic orbital electron populations 1.21784 0.93046 1.02634 1.03225 1.22918 0.94859 0.80849 1.02608 1.86457 1.25399 1.31913 1.85142 1.23647 0.80094 0.93234 0.73909 1.90772 1.59545 1.42359 1.41765 1.21590 0.91927 0.90307 1.03150 1.61736 1.00516 1.20297 1.39933 1.20416 0.98402 0.93955 0.84008 1.21051 0.95681 1.34488 1.02150 0.88863 1.24826 0.94732 0.95528 0.98058 1.69877 1.12009 1.39067 1.33176 0.86984 0.80582 0.77866 0.85002 1.20527 1.21276 1.19465 1.21103 1.03160 0.89456 0.89305 1.19801 0.93964 0.93998 0.96402 1.21040 0.99957 0.99483 0.95833 1.17637 0.90700 0.90234 0.94089 1.91492 1.63289 1.61531 1.95650 1.21011 0.98183 0.98783 0.98743 1.20949 0.97425 0.96613 0.95847 1.21031 0.95928 0.94681 0.93669 1.98482 1.53091 1.51101 1.96268 0.90530 0.91664 0.91685 0.91434 0.91362 0.87918 0.91706 0.93914 0.99828 0.92875 0.86778 0.94001 0.84224 0.84367 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.37 -5.77 10.22 -39.24 -0.40 -6.17 16 4 C 0.45 8.29 7.47 36.00 0.27 8.56 16 5 O -0.46 -10.39 14.29 -18.76 -0.27 -10.66 16 6 C 0.06 0.98 5.42 -4.98 -0.03 0.95 16 7 N -0.50 -9.84 4.02 -238.97 -0.96 -10.80 16 8 C 0.16 3.73 3.35 -4.97 -0.02 3.71 16 9 C -0.50 -13.76 9.15 -34.44 -0.32 -14.08 16 10 H 0.09 2.71 6.82 -52.48 -0.36 2.35 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 13 Si 0.87 21.88 27.56 -169.99 -4.69 17.19 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.27 -6.69 6.41 56.52 0.36 -6.33 16 17 C 0.10 1.64 4.25 -4.98 -0.02 1.62 16 18 C -0.04 -0.59 4.48 -104.60 -0.47 -1.05 16 19 C -0.14 -1.77 8.86 -39.52 -0.35 -2.12 16 20 C 0.09 1.10 7.30 -39.42 -0.29 0.82 16 21 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 22 C -0.15 -1.61 10.03 -39.52 -0.40 -2.01 16 23 C -0.09 -1.08 9.83 -39.56 -0.39 -1.47 16 24 C -0.03 -0.38 6.31 -39.50 -0.25 -0.63 16 25 Cl -0.02 -0.34 26.48 -51.86 -1.37 -1.71 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 30 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.10 1.47 6.44 -51.93 -0.33 1.13 16 32 H 0.07 0.95 8.12 -51.92 -0.42 0.53 16 33 H 0.04 1.09 4.58 -51.93 -0.24 0.86 16 34 H -0.02 -0.36 7.66 -51.93 -0.40 -0.76 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.11 2.20 6.76 -51.93 -0.35 1.85 16 37 H 0.04 0.62 7.91 -51.93 -0.41 0.21 16 38 H 0.14 1.46 8.00 -52.49 -0.42 1.04 16 39 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -32.79 354.24 -8.34 -41.13 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.06 Total: -2.03 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.74 Total: -3.75 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.19 Total: -37.69 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.67 Total: -16.83 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.69 Total: 17.19 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.37 Total: -1.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.79 -8.34 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138674704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.059 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds