Wall clock time and date at job start Sat Apr 11 2020 02:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00061 * 2 1 4 4 H 1.48500 * 109.47487 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47323 * 300.00791 * 3 2 1 6 6 H 1.48504 * 109.46849 * 60.00360 * 3 2 1 7 7 C 1.37878 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00144 * 359.97438 * 7 2 1 10 10 C 1.53509 * 114.17225 * 179.97438 * 9 7 2 11 11 N 1.47480 * 87.93246 * 220.32754 * 10 9 7 12 12 C 1.46900 * 110.99964 * 138.70815 * 11 10 9 13 13 C 1.50700 * 109.47204 * 170.00247 * 12 11 10 14 14 C 1.38319 * 119.87681 * 89.99597 * 13 12 11 15 15 C 1.38014 * 120.12144 * 179.97438 * 14 13 12 16 16 C 1.39365 * 119.87512 * 0.02562 * 15 14 13 17 17 C 1.48344 * 120.12023 * 179.72178 * 16 15 14 18 18 C 1.39746 * 120.16321 * 180.02562 * 17 16 15 19 19 C 1.38591 * 117.90583 * 179.97438 * 18 17 16 20 20 C 1.38887 * 118.05204 * 359.97438 * 19 18 17 21 21 Cl 1.73593 * 119.98427 * 179.97438 * 20 19 18 22 22 N 1.32050 * 120.03586 * 0.02562 * 20 19 18 23 23 N 1.28355 * 122.28532 * 359.72533 * 22 20 19 24 24 C 1.39357 * 119.75427 * 0.02562 * 16 15 14 25 25 C 1.38010 * 119.87422 * 359.97438 * 24 16 15 26 26 C 1.47477 * 87.83801 * 27.01168 * 11 10 9 27 27 H 0.96995 * 119.99977 * 359.97438 * 1 2 3 28 28 H 1.09004 * 113.25328 * 312.95377 * 9 7 2 29 29 H 1.09003 * 113.47420 * 105.56420 * 10 9 7 30 30 H 1.08990 * 113.47914 * 335.09707 * 10 9 7 31 31 H 1.08991 * 109.47457 * 49.99460 * 12 11 10 32 32 H 1.09002 * 109.46821 * 290.00008 * 12 11 10 33 33 H 1.07993 * 119.94217 * 359.97438 * 14 13 12 34 34 H 1.08005 * 120.06289 * 179.97438 * 15 14 13 35 35 H 1.07996 * 121.05474 * 359.95781 * 18 17 16 36 36 H 1.08001 * 120.97755 * 179.97438 * 19 18 17 37 37 H 1.07995 * 120.05934 * 179.97438 * 24 16 15 38 38 H 1.08000 * 119.93517 * 180.02562 * 25 24 16 39 39 H 1.08991 * 113.47584 * 87.75149 * 26 11 10 40 40 H 1.09001 * 113.47829 * 218.22747 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1497 -3.7437 -0.0018 11 7 1.2069 -4.3579 -0.9551 12 6 1.9244 -5.0854 -2.0105 13 6 0.9437 -5.8971 -2.8170 14 6 0.3402 -5.3410 -3.9303 15 6 -0.5583 -6.0799 -4.6729 16 6 -0.8575 -7.3887 -4.2987 17 6 -1.8271 -8.1858 -5.0893 18 6 -2.1282 -9.4980 -4.7146 19 6 -3.0409 -10.1997 -5.4862 20 6 -3.6001 -9.5565 -6.5828 21 17 -4.7483 -10.3887 -7.5841 22 7 -3.2580 -8.3127 -6.8648 23 7 -2.4172 -7.6546 -6.1525 24 6 -0.2472 -7.9435 -3.1754 25 6 0.6497 -7.1953 -2.4403 26 6 0.8544 -2.9960 -1.3979 27 1 -0.4850 0.8400 0.0004 28 1 0.4452 -2.5308 0.7328 29 1 2.1871 -4.2532 0.9611 30 1 3.1387 -3.5648 -0.4234 31 1 2.6604 -5.7498 -1.5578 32 1 2.4302 -4.3737 -2.6630 33 1 0.5724 -4.3266 -4.2192 34 1 -1.0293 -5.6446 -5.5419 35 1 -1.6641 -9.9512 -3.8511 36 1 -3.3094 -11.2169 -5.2419 37 1 -0.4758 -8.9570 -2.8808 38 1 1.1235 -7.6244 -1.5698 39 1 1.4978 -2.6175 -2.1920 40 1 -0.2058 -2.8717 -1.6181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140410216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:32 Heat of formation + Delta-G solvation = 112.654481 kcal Electronic energy + Delta-G solvation = -23521.156986 eV Core-core repulsion = 19942.231917 eV Total energy + Delta-G solvation = -3578.925069 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47920 -39.61637 -38.50369 -37.29750 -34.36312 -33.54604 -32.69439 -31.23790 -31.02202 -28.49225 -26.03296 -25.34830 -24.82793 -24.39923 -22.53788 -22.33995 -20.79429 -18.66503 -18.18756 -17.86204 -17.17509 -16.70932 -15.69895 -15.64172 -15.19152 -14.88832 -14.61286 -14.49735 -14.17505 -13.98647 -13.59745 -13.40031 -13.12659 -12.94231 -12.40175 -12.11427 -11.96745 -11.90802 -11.73107 -11.44324 -11.18202 -11.04501 -10.96045 -10.84353 -10.60050 -10.35256 -10.27963 -10.07725 -9.79563 -9.31944 -8.99699 -8.95524 -8.50932 -8.37958 -8.06361 -6.08592 -4.13512 -0.04354 0.26207 1.17600 1.40252 1.45061 3.01449 3.25772 3.34456 3.37375 3.54346 3.80968 3.89617 4.05916 4.16133 4.37591 4.44157 4.77761 4.84581 4.91028 5.05325 5.11775 5.21259 5.25222 5.37206 5.44802 5.50496 5.67230 5.77422 5.93515 6.02456 6.09107 6.24903 6.36242 6.39978 6.42336 6.62045 6.63646 6.70005 6.90852 7.10799 7.12206 7.68914 7.86400 8.00348 8.13950 8.33043 8.90125 9.51899 11.00925 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.025030 B = 0.001960 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.401015 B =14279.309493 C =14987.082868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.041 3.959 10 C -0.005 4.005 11 N -0.478 5.478 12 C 0.049 3.951 13 C -0.031 4.031 14 C -0.115 4.115 15 C -0.069 4.069 16 C -0.076 4.076 17 C 0.131 3.869 18 C -0.102 4.102 19 C -0.100 4.100 20 C 0.099 3.901 21 Cl -0.010 7.010 22 N -0.222 5.222 23 N -0.218 5.218 24 C -0.093 4.093 25 C -0.109 4.109 26 C 0.006 3.994 27 H 0.262 0.738 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.054 0.946 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 -22.910 -10.386 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.022 3.978 10 C -0.134 4.134 11 N -0.201 5.201 12 C -0.079 4.079 13 C -0.032 4.032 14 C -0.133 4.133 15 C -0.088 4.088 16 C -0.078 4.078 17 C -0.011 4.011 18 C -0.130 4.130 19 C -0.129 4.129 20 C -0.072 4.072 21 Cl 0.018 6.982 22 N -0.066 5.066 23 N -0.061 5.061 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.123 4.123 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.180 0.820 36 H 0.179 0.821 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.072 0.928 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.554 -22.059 -11.294 25.197 hybrid contribution 1.003 0.019 0.354 1.063 sum -3.552 -22.039 -10.941 24.861 Atomic orbital electron populations 1.69975 1.05992 1.26708 1.49541 1.25029 0.94829 0.99216 0.94592 0.86562 0.80147 0.83760 0.77686 1.19721 1.20967 1.20900 1.21059 0.92765 0.90210 1.51483 0.92358 1.20099 0.94297 0.90831 0.92579 1.24030 0.95796 0.97728 0.95838 1.68938 1.27067 1.14401 1.09652 1.21724 0.94129 0.97539 0.94557 1.20087 0.95761 0.93748 0.93590 1.21130 0.96892 1.00099 0.95210 1.21272 0.95824 0.92519 0.99177 1.18107 0.98611 0.94512 0.96582 1.21577 0.94351 0.92141 0.93017 1.22496 0.96240 0.94014 1.00279 1.22179 0.95445 1.02179 0.93103 1.23521 0.96043 0.93761 0.93883 1.98426 1.56613 1.74708 1.68437 1.72949 1.07359 1.04473 1.21782 1.73382 1.03120 1.26503 1.03122 1.21068 0.96508 0.99610 0.94003 1.20914 0.98352 0.94038 0.99451 1.24134 1.00338 0.86455 1.01401 0.92864 0.91772 0.91888 0.92695 0.90802 0.92907 0.85373 0.84735 0.81955 0.82061 0.85814 0.85404 0.92758 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.24 13.26 55.43 0.74 -24.51 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -13.73 8.82 -34.44 -0.30 -14.04 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.04 1.00 3.77 -91.24 -0.34 0.65 16 10 C -0.01 -0.11 7.25 -7.55 -0.05 -0.16 16 11 N -0.48 -9.13 6.32 -246.10 -1.55 -10.69 16 12 C 0.05 0.75 4.93 -4.98 -0.02 0.73 16 13 C -0.03 -0.43 5.47 -104.56 -0.57 -1.01 16 14 C -0.11 -1.60 9.68 -39.63 -0.38 -1.99 16 15 C -0.07 -0.91 9.58 -39.24 -0.38 -1.28 16 16 C -0.08 -0.90 5.88 -104.90 -0.62 -1.52 16 17 C 0.13 1.48 6.81 -82.77 -0.56 0.91 16 18 C -0.10 -0.79 9.55 -38.89 -0.37 -1.16 16 19 C -0.10 -0.72 9.99 -39.21 -0.39 -1.11 16 20 C 0.10 0.98 7.37 -17.22 -0.13 0.85 16 21 Cl -0.01 -0.08 29.13 -51.86 -1.51 -1.59 16 22 N -0.22 -2.85 11.48 32.91 0.38 -2.47 16 23 N -0.22 -2.90 10.63 33.36 0.35 -2.55 16 24 C -0.09 -0.97 9.43 -39.25 -0.37 -1.34 16 25 C -0.11 -1.31 9.68 -39.63 -0.38 -1.69 16 26 C 0.01 0.12 7.28 -7.54 -0.05 0.07 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 1.06 7.87 -51.93 -0.41 0.66 16 31 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 32 H 0.05 0.83 7.24 -51.93 -0.38 0.45 16 33 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.13 1.71 7.56 -52.48 -0.40 1.32 16 35 H 0.16 0.73 6.30 -52.49 -0.33 0.40 16 36 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.12 0.86 6.25 -52.49 -0.33 0.53 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.05 1.19 7.37 -51.93 -0.38 0.81 16 40 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -30.08 357.91 -10.98 -41.05 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.72 Total: 0.01 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -5.03 Total: -20.37 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.09 Total: -40.21 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.51 Total: -1.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.08 -10.98 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140410216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.709 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds