Wall clock time and date at job start Sat Apr 11 2020 02:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00061 * 2 1 4 4 H 1.48500 * 109.47487 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47323 * 300.00791 * 3 2 1 6 6 H 1.48504 * 109.46849 * 60.00360 * 3 2 1 7 7 C 1.37878 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00144 * 359.97438 * 7 2 1 10 10 C 1.53509 * 114.17225 * 179.97438 * 9 7 2 11 11 N 1.47480 * 87.93246 * 220.32754 * 10 9 7 12 12 C 1.46900 * 110.99964 * 138.70815 * 11 10 9 13 13 C 1.50700 * 109.47204 * 170.00247 * 12 11 10 14 14 C 1.38319 * 119.87681 * 89.99597 * 13 12 11 15 15 C 1.38014 * 120.12144 * 179.97438 * 14 13 12 16 16 C 1.39365 * 119.87512 * 0.02562 * 15 14 13 17 17 C 1.48344 * 120.12023 * 179.72178 * 16 15 14 18 18 C 1.39746 * 120.16321 * 180.02562 * 17 16 15 19 19 C 1.38591 * 117.90583 * 179.97438 * 18 17 16 20 20 C 1.38887 * 118.05204 * 359.97438 * 19 18 17 21 21 Cl 1.73593 * 119.98427 * 179.97438 * 20 19 18 22 22 N 1.32050 * 120.03586 * 0.02562 * 20 19 18 23 23 N 1.28355 * 122.28532 * 359.72533 * 22 20 19 24 24 C 1.39357 * 119.75427 * 0.02562 * 16 15 14 25 25 C 1.38010 * 119.87422 * 359.97438 * 24 16 15 26 26 C 1.47477 * 87.83801 * 27.01168 * 11 10 9 27 27 H 0.96995 * 119.99977 * 359.97438 * 1 2 3 28 28 H 1.09004 * 113.25328 * 312.95377 * 9 7 2 29 29 H 1.09003 * 113.47420 * 105.56420 * 10 9 7 30 30 H 1.08990 * 113.47914 * 335.09707 * 10 9 7 31 31 H 1.08991 * 109.47457 * 49.99460 * 12 11 10 32 32 H 1.09002 * 109.46821 * 290.00008 * 12 11 10 33 33 H 1.07993 * 119.94217 * 359.97438 * 14 13 12 34 34 H 1.08005 * 120.06289 * 179.97438 * 15 14 13 35 35 H 1.07996 * 121.05474 * 359.95781 * 18 17 16 36 36 H 1.08001 * 120.97755 * 179.97438 * 19 18 17 37 37 H 1.07995 * 120.05934 * 179.97438 * 24 16 15 38 38 H 1.08000 * 119.93517 * 180.02562 * 25 24 16 39 39 H 1.08991 * 113.47584 * 87.75149 * 26 11 10 40 40 H 1.09001 * 113.47829 * 218.22747 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1497 -3.7437 -0.0018 11 7 1.2069 -4.3579 -0.9551 12 6 1.9244 -5.0854 -2.0105 13 6 0.9437 -5.8971 -2.8170 14 6 0.3402 -5.3410 -3.9303 15 6 -0.5583 -6.0799 -4.6729 16 6 -0.8575 -7.3887 -4.2987 17 6 -1.8271 -8.1858 -5.0893 18 6 -2.1282 -9.4980 -4.7146 19 6 -3.0409 -10.1997 -5.4862 20 6 -3.6001 -9.5565 -6.5828 21 17 -4.7483 -10.3887 -7.5841 22 7 -3.2580 -8.3127 -6.8648 23 7 -2.4172 -7.6546 -6.1525 24 6 -0.2472 -7.9435 -3.1754 25 6 0.6497 -7.1953 -2.4403 26 6 0.8544 -2.9960 -1.3979 27 1 -0.4850 0.8400 0.0004 28 1 0.4452 -2.5308 0.7328 29 1 2.1871 -4.2532 0.9611 30 1 3.1387 -3.5648 -0.4234 31 1 2.6604 -5.7498 -1.5578 32 1 2.4302 -4.3737 -2.6630 33 1 0.5724 -4.3266 -4.2192 34 1 -1.0293 -5.6446 -5.5419 35 1 -1.6641 -9.9512 -3.8511 36 1 -3.3094 -11.2169 -5.2419 37 1 -0.4758 -8.9570 -2.8808 38 1 1.1235 -7.6244 -1.5698 39 1 1.4978 -2.6175 -2.1920 40 1 -0.2058 -2.8717 -1.6181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140410216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:32 Heat of formation + Delta-G solvation = 94.215303 kcal Electronic energy + Delta-G solvation = -23521.956568 eV Core-core repulsion = 19942.231917 eV Total energy + Delta-G solvation = -3579.724652 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.24098 -40.94317 -39.75955 -37.98219 -35.36692 -34.62816 -34.17976 -32.40834 -31.94769 -29.90074 -27.54220 -26.56218 -26.04448 -25.58600 -23.87547 -23.26898 -21.88284 -20.46156 -18.97379 -18.67102 -18.53431 -17.94475 -16.82429 -16.68243 -16.48085 -16.25481 -16.00978 -15.66766 -15.34528 -15.07605 -14.65349 -14.38365 -14.10580 -13.97603 -13.81048 -13.47644 -13.19644 -13.15411 -12.92542 -12.75119 -12.60810 -12.42999 -12.25472 -12.15837 -11.82267 -11.57561 -11.51550 -11.23178 -11.00301 -10.84497 -10.80597 -10.50946 -9.89709 -9.72037 -9.36367 -8.15576 -6.26828 -0.81539 -0.38131 0.46854 0.48314 0.54152 1.41221 1.43281 1.54597 2.22156 2.42076 2.77224 2.85862 3.13998 3.21633 3.44686 3.46757 3.53866 3.78003 3.85671 3.98423 4.05761 4.21198 4.32179 4.40648 4.45885 4.46560 4.53985 4.66491 4.75756 4.81060 4.85524 4.88615 4.97921 4.99163 5.12055 5.24579 5.37206 5.45311 5.48684 5.63105 5.73439 5.85457 5.96340 6.29336 6.38033 6.83668 7.37370 7.41971 8.94285 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.025030 B = 0.001960 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.401015 B =14279.309493 C =14987.082868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.018 3.982 10 C 0.012 3.988 11 N -0.474 5.474 12 C 0.051 3.949 13 C -0.053 4.053 14 C -0.130 4.130 15 C -0.087 4.087 16 C -0.075 4.075 17 C 0.112 3.888 18 C -0.088 4.088 19 C -0.087 4.087 20 C 0.092 3.908 21 Cl 0.000 7.000 22 N -0.263 5.263 23 N -0.257 5.257 24 C -0.080 4.080 25 C -0.108 4.108 26 C 0.020 3.980 27 H 0.262 0.738 28 H 0.029 0.971 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.206 0.794 36 H 0.205 0.795 37 H 0.171 0.829 38 H 0.151 0.849 39 H 0.051 0.949 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -26.194 -9.693 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.565 4.565 8 H 0.080 0.920 9 C -0.001 4.001 10 C -0.117 4.117 11 N -0.196 5.196 12 C -0.076 4.076 13 C -0.054 4.054 14 C -0.149 4.149 15 C -0.106 4.106 16 C -0.077 4.077 17 C -0.031 4.031 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.080 4.080 21 Cl 0.028 6.972 22 N -0.106 5.106 23 N -0.099 5.099 24 C -0.099 4.099 25 C -0.126 4.126 26 C -0.110 4.110 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.222 0.778 36 H 0.222 0.778 37 H 0.188 0.812 38 H 0.168 0.832 39 H 0.069 0.931 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.613 -25.346 -10.615 27.716 hybrid contribution 0.622 0.884 0.074 1.083 sum -2.991 -24.463 -10.541 26.804 Atomic orbital electron populations 1.70107 1.07591 1.27474 1.51048 1.25858 0.95596 1.02819 0.94463 0.85515 0.79272 0.79411 0.77521 1.18561 1.20866 1.20639 1.21421 0.93086 0.91368 1.50666 0.92012 1.20065 0.94673 0.92337 0.93061 1.23841 0.95434 0.95394 0.97012 1.68838 1.27644 1.12605 1.10549 1.21738 0.94702 0.97562 0.93643 1.20039 0.96572 0.94983 0.93837 1.21092 0.97861 0.99844 0.96107 1.21270 0.96271 0.93750 0.99273 1.18327 0.98436 0.93875 0.97033 1.21700 0.94628 0.93820 0.92942 1.22931 0.95462 0.92202 1.00960 1.22662 0.93961 1.03651 0.91270 1.23871 0.96022 0.93324 0.94756 1.98429 1.56233 1.74118 1.68420 1.72829 1.08534 1.06288 1.22961 1.73265 1.04214 1.27934 1.04479 1.21481 0.94748 1.01265 0.92366 1.21206 0.98313 0.93061 1.00048 1.23811 0.98661 0.88586 0.99898 0.92936 0.95309 0.90295 0.91638 0.88241 0.93505 0.86774 0.85723 0.77764 0.77773 0.81218 0.83172 0.93087 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.44 13.26 21.45 0.28 -54.16 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.53 -28.44 8.82 25.60 0.23 -28.21 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.02 0.89 3.77 -11.20 -0.04 0.85 16 10 C 0.01 0.46 7.25 83.57 0.61 1.06 16 11 N -0.47 -17.94 6.32 -932.52 -5.89 -23.83 16 12 C 0.05 1.53 4.93 85.56 0.42 1.95 16 13 C -0.05 -1.46 5.47 -19.82 -0.11 -1.57 16 14 C -0.13 -3.79 9.68 22.24 0.22 -3.58 16 15 C -0.09 -2.36 9.58 22.49 0.22 -2.14 16 16 C -0.07 -1.67 5.88 -20.05 -0.12 -1.78 16 17 C 0.11 2.35 6.81 42.07 0.29 2.64 16 18 C -0.09 -1.00 9.55 22.72 0.22 -0.79 16 19 C -0.09 -0.92 9.99 22.51 0.22 -0.69 16 20 C 0.09 1.67 7.37 84.82 0.62 2.29 16 21 Cl 0.00 0.00 29.13 -2.72 -0.08 -0.08 16 22 N -0.26 -6.77 11.48 -49.79 -0.57 -7.34 16 23 N -0.26 -6.92 10.63 -48.37 -0.51 -7.43 16 24 C -0.08 -1.37 9.43 22.49 0.21 -1.16 16 25 C -0.11 -2.27 9.68 22.24 0.22 -2.05 16 26 C 0.02 0.90 7.28 83.58 0.61 1.51 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.03 1.63 8.11 -2.38 -0.02 1.61 16 29 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.07 2.43 7.87 -2.39 -0.02 2.41 16 31 H 0.10 2.46 8.02 -2.39 -0.02 2.44 16 32 H 0.05 1.45 7.24 -2.39 -0.02 1.44 16 33 H 0.11 3.47 8.06 -2.91 -0.02 3.44 16 34 H 0.12 3.51 7.56 -2.91 -0.02 3.48 16 35 H 0.21 0.48 6.30 -2.91 -0.02 0.46 16 36 H 0.21 0.32 8.06 -2.91 -0.02 0.29 16 37 H 0.17 1.27 6.25 -2.91 -0.02 1.25 16 38 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.05 2.32 7.37 -2.39 -0.02 2.31 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -69.59 357.91 0.59 -69.00 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.07 Total: 9.28 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 4.27 Total: -30.55 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -6.69 Total: -92.76 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -69.59 0.59 -69.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140410216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.217 kcal (2) G-P(sol) polarization free energy of solvation -69.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds