Wall clock time and date at job start Sat Apr 11 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47406 * 2 1 4 4 C 1.34229 * 116.99963 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00292 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00093 * 180.02562 * 4 3 2 7 7 N 1.46895 * 109.47519 * 174.23744 * 6 4 3 8 8 C 1.46906 * 110.99890 * 287.88643 * 7 6 4 9 9 C 1.50702 * 109.46937 * 295.55138 * 8 7 6 10 10 H 1.08004 * 119.99900 * 5.25050 * 9 8 7 11 11 C 1.37876 * 120.00292 * 185.24343 * 9 8 7 12 12 N 1.31515 * 119.99650 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00050 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47198 * 60.00503 * 13 11 9 15 15 H 1.48502 * 109.46943 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47331 * 300.00022 * 13 11 9 17 17 C 1.46895 * 111.00231 * 163.93196 * 7 6 4 18 18 C 1.50708 * 109.47053 * 190.00048 * 17 7 6 19 19 C 1.38232 * 119.97450 * 270.02123 * 18 17 7 20 20 C 1.38445 * 119.99531 * 179.97438 * 19 18 17 21 21 F 1.35102 * 120.01873 * 180.02562 * 20 19 18 22 22 C 1.38462 * 119.96240 * 0.02562 * 20 19 18 23 23 C 1.38285 * 119.96453 * 359.97438 * 22 20 19 24 24 Cl 1.73595 * 120.00392 * 179.97438 * 23 22 20 25 25 C 1.38200 * 119.98300 * 89.99728 * 18 17 7 26 26 H 1.08994 * 109.46993 * 59.99633 * 1 2 3 27 27 H 1.08995 * 109.47647 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46747 * 300.00106 * 1 2 3 29 29 H 1.09002 * 109.46747 * 239.99894 * 2 1 3 30 30 H 1.09000 * 109.46886 * 120.00836 * 2 1 3 31 31 H 1.08999 * 109.47006 * 54.22871 * 6 4 3 32 32 H 1.09003 * 109.46841 * 294.23539 * 6 4 3 33 33 H 1.09000 * 109.46905 * 55.54825 * 8 7 6 34 34 H 1.08992 * 109.47458 * 175.55187 * 8 7 6 35 35 H 0.97003 * 119.99775 * 179.97438 * 12 11 9 36 36 H 1.08993 * 109.47334 * 70.00218 * 17 7 6 37 37 H 1.08997 * 109.47257 * 309.99230 * 17 7 6 38 38 H 1.07994 * 120.00546 * 359.97438 * 19 18 17 39 39 H 1.08002 * 120.01613 * 180.25535 * 22 20 19 40 40 H 1.08003 * 119.97936 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9372 0.0000 7 7 5.3814 2.8629 0.1383 8 6 5.7617 2.4652 1.5005 9 6 5.3293 3.5312 2.4741 10 1 4.7487 4.3741 2.1293 11 6 5.6746 3.4303 3.8051 12 7 6.3819 2.4040 4.2249 13 14 5.1393 4.7519 5.0117 14 1 3.6566 4.8333 5.0311 15 1 5.6346 4.4121 6.3698 16 1 5.7015 6.0611 4.5935 17 6 6.0109 4.1371 -0.2331 18 6 7.5045 3.9540 -0.3169 19 6 8.2891 4.1576 0.8028 20 6 9.6611 3.9890 0.7265 21 9 10.4284 4.1874 1.8206 22 6 10.2465 3.6168 -0.4718 23 6 9.4600 3.4135 -1.5909 24 17 10.1930 2.9475 -3.0940 25 6 8.0887 3.5820 -1.5128 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 3.5051 3.5021 0.8343 32 1 3.6695 3.4347 -0.9367 33 1 5.2749 1.5233 1.7531 34 1 6.8432 2.3412 1.5542 35 1 6.6252 2.3332 5.1612 36 1 5.7789 4.8902 0.5199 37 1 5.6300 4.4619 -1.2014 38 1 7.8319 4.4483 1.7370 39 1 11.3163 3.4810 -0.5313 40 1 7.4747 3.4232 -2.3870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140542179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:34 Heat of formation + Delta-G solvation = -109.970451 kcal Electronic energy + Delta-G solvation = -25937.020164 eV Core-core repulsion = 21885.379378 eV Total energy + Delta-G solvation = -4051.640786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.55285 -39.97578 -39.11706 -37.05185 -36.28943 -35.58527 -32.64685 -31.74231 -31.25514 -30.12868 -27.99662 -27.02840 -24.60147 -23.16059 -22.45169 -22.14067 -20.77905 -19.75424 -17.52829 -16.91844 -16.59695 -16.29491 -16.23170 -15.91997 -15.51096 -15.33763 -14.90962 -14.64807 -14.46686 -14.14487 -13.59664 -13.30708 -13.06666 -12.92358 -12.82798 -12.49507 -12.42824 -12.02279 -11.76607 -11.44146 -11.37659 -11.21062 -11.08232 -11.01871 -10.99839 -10.84746 -10.76238 -10.50115 -10.21335 -10.07157 -9.82145 -9.69194 -8.59208 -8.53642 -8.35026 -7.41968 -6.12532 -4.24287 1.31710 1.36787 2.16543 2.84126 3.02693 3.21001 3.28002 3.28889 3.73618 4.30532 4.54668 4.83174 5.01163 5.03132 5.07969 5.17485 5.20624 5.24633 5.35611 5.39577 5.52464 5.60729 5.65437 5.80981 5.84886 5.94960 5.99862 6.03800 6.14584 6.24219 6.35284 6.44670 6.83679 6.86461 7.01485 7.11053 7.44252 7.75055 7.82774 8.00601 8.12753 8.41750 8.85596 9.42893 10.92134 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.008778 B = 0.004674 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.900224 B = 5988.805566 C = 8572.614232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.368 6.368 4 C 0.465 3.535 5 O -0.487 6.487 6 C 0.068 3.932 7 N -0.524 5.524 8 C 0.181 3.819 9 C -0.563 4.563 10 H 0.058 0.942 11 C 0.072 3.928 12 N -0.880 5.880 13 Si 0.884 3.116 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.098 3.902 18 C -0.020 4.020 19 C -0.115 4.115 20 C 0.106 3.894 21 F -0.136 7.136 22 C -0.156 4.156 23 C -0.016 4.016 24 Cl -0.074 7.074 25 C -0.104 4.104 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.157 0.843 39 H 0.138 0.862 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 2.181 -11.460 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.061 4.061 7 N -0.248 5.248 8 C 0.055 3.945 9 C -0.602 4.602 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.517 5.517 13 Si 0.712 3.288 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.029 4.029 18 C -0.021 4.021 19 C -0.134 4.134 20 C 0.087 3.913 21 F -0.114 7.114 22 C -0.175 4.175 23 C -0.043 4.043 24 Cl -0.045 7.045 25 C -0.124 4.124 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.174 0.826 39 H 0.156 0.844 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.639 1.349 -11.707 11.897 hybrid contribution -0.238 0.931 1.582 1.851 sum -1.877 2.280 -10.125 10.547 Atomic orbital electron populations 1.21781 0.93161 1.02507 1.03290 1.22882 0.94837 0.81081 1.02362 1.86475 1.25537 1.31636 1.84962 1.23765 0.79810 0.93242 0.72518 1.90643 1.60009 1.42897 1.43569 1.21415 0.91186 0.89939 1.03546 1.62265 1.04002 1.27559 1.31019 1.19955 0.98090 0.96069 0.80342 1.21638 1.35976 1.08710 0.93910 0.92387 1.24923 0.94681 0.95440 0.98251 1.69941 1.36628 1.28903 1.16211 0.86779 0.79138 0.82248 0.80659 1.20174 1.21142 1.20071 1.20919 0.88808 0.92665 1.00555 1.19496 0.95922 0.95388 0.91283 1.21558 0.91142 0.99604 1.01070 1.17450 0.89058 1.02017 0.82819 1.91508 1.75171 1.92633 1.52114 1.20809 1.00822 1.04882 0.91028 1.20422 0.92965 1.03804 0.87097 1.98349 1.83216 1.90855 1.32085 1.20938 0.92097 1.00296 0.99052 0.91749 0.90669 0.91542 0.91684 0.91407 0.89316 0.88557 0.94501 0.93750 0.92522 0.91509 0.91107 0.82556 0.84440 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.05 10.22 -39.26 -0.40 -6.45 16 4 C 0.47 8.78 7.54 36.01 0.27 9.05 16 5 O -0.49 -10.77 14.90 -18.75 -0.28 -11.05 16 6 C 0.07 1.19 5.42 -4.98 -0.03 1.16 16 7 N -0.52 -10.30 4.29 -238.97 -1.03 -11.33 16 8 C 0.18 4.39 4.39 -4.97 -0.02 4.36 16 9 C -0.56 -13.98 6.74 -34.44 -0.23 -14.21 16 10 H 0.06 1.37 5.97 -52.48 -0.31 1.06 16 11 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 12 N -0.88 -24.85 13.29 55.43 0.74 -24.11 16 13 Si 0.88 20.18 29.54 -169.99 -5.02 15.16 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 C 0.10 1.63 4.90 -4.97 -0.02 1.60 16 18 C -0.02 -0.34 4.88 -104.63 -0.51 -0.85 16 19 C -0.11 -2.11 7.96 -39.51 -0.31 -2.42 16 20 C 0.11 1.84 7.30 -39.42 -0.29 1.56 16 21 F -0.14 -2.47 17.27 2.25 0.04 -2.43 16 22 C -0.16 -2.36 9.81 -39.48 -0.39 -2.75 16 23 C -0.02 -0.24 6.32 -39.51 -0.25 -0.49 16 24 Cl -0.07 -0.94 28.96 -51.86 -1.50 -2.45 16 25 C -0.10 -1.58 9.48 -39.54 -0.37 -1.95 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 30 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.09 1.61 6.40 -51.93 -0.33 1.28 16 32 H 0.10 1.31 7.81 -51.93 -0.41 0.90 16 33 H 0.04 1.03 6.58 -51.93 -0.34 0.69 16 34 H 0.04 1.18 6.20 -51.93 -0.32 0.86 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.07 1.17 6.31 -51.93 -0.33 0.84 16 37 H 0.07 0.95 7.80 -51.93 -0.41 0.54 16 38 H 0.16 3.24 7.43 -52.49 -0.39 2.85 16 39 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.14 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -29.43 356.06 -8.66 -38.09 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.93 Total: 2.36 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.64 Total: -3.17 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.29 Total: -35.44 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.68 Total: -17.49 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.43 -8.66 -38.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140542179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.883 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds