Wall clock time and date at job start Sat Apr 11 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47406 * 2 1 4 4 C 1.34229 * 116.99963 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00292 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00093 * 180.02562 * 4 3 2 7 7 N 1.46895 * 109.47519 * 174.23744 * 6 4 3 8 8 C 1.46906 * 110.99890 * 287.88643 * 7 6 4 9 9 C 1.50702 * 109.46937 * 295.55138 * 8 7 6 10 10 H 1.08004 * 119.99900 * 5.25050 * 9 8 7 11 11 C 1.37876 * 120.00292 * 185.24343 * 9 8 7 12 12 N 1.31515 * 119.99650 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00050 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47198 * 60.00503 * 13 11 9 15 15 H 1.48502 * 109.46943 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47331 * 300.00022 * 13 11 9 17 17 C 1.46895 * 111.00231 * 163.93196 * 7 6 4 18 18 C 1.50708 * 109.47053 * 190.00048 * 17 7 6 19 19 C 1.38232 * 119.97450 * 270.02123 * 18 17 7 20 20 C 1.38445 * 119.99531 * 179.97438 * 19 18 17 21 21 F 1.35102 * 120.01873 * 180.02562 * 20 19 18 22 22 C 1.38462 * 119.96240 * 0.02562 * 20 19 18 23 23 C 1.38285 * 119.96453 * 359.97438 * 22 20 19 24 24 Cl 1.73595 * 120.00392 * 179.97438 * 23 22 20 25 25 C 1.38200 * 119.98300 * 89.99728 * 18 17 7 26 26 H 1.08994 * 109.46993 * 59.99633 * 1 2 3 27 27 H 1.08995 * 109.47647 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46747 * 300.00106 * 1 2 3 29 29 H 1.09002 * 109.46747 * 239.99894 * 2 1 3 30 30 H 1.09000 * 109.46886 * 120.00836 * 2 1 3 31 31 H 1.08999 * 109.47006 * 54.22871 * 6 4 3 32 32 H 1.09003 * 109.46841 * 294.23539 * 6 4 3 33 33 H 1.09000 * 109.46905 * 55.54825 * 8 7 6 34 34 H 1.08992 * 109.47458 * 175.55187 * 8 7 6 35 35 H 0.97003 * 119.99775 * 179.97438 * 12 11 9 36 36 H 1.08993 * 109.47334 * 70.00218 * 17 7 6 37 37 H 1.08997 * 109.47257 * 309.99230 * 17 7 6 38 38 H 1.07994 * 120.00546 * 359.97438 * 19 18 17 39 39 H 1.08002 * 120.01613 * 180.25535 * 22 20 19 40 40 H 1.08003 * 119.97936 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9372 0.0000 7 7 5.3814 2.8629 0.1383 8 6 5.7617 2.4652 1.5005 9 6 5.3293 3.5312 2.4741 10 1 4.7487 4.3741 2.1293 11 6 5.6746 3.4303 3.8051 12 7 6.3819 2.4040 4.2249 13 14 5.1393 4.7519 5.0117 14 1 3.6566 4.8333 5.0311 15 1 5.6346 4.4121 6.3698 16 1 5.7015 6.0611 4.5935 17 6 6.0109 4.1371 -0.2331 18 6 7.5045 3.9540 -0.3169 19 6 8.2891 4.1576 0.8028 20 6 9.6611 3.9890 0.7265 21 9 10.4284 4.1874 1.8206 22 6 10.2465 3.6168 -0.4718 23 6 9.4600 3.4135 -1.5909 24 17 10.1930 2.9475 -3.0940 25 6 8.0887 3.5820 -1.5128 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 3.5051 3.5021 0.8343 32 1 3.6695 3.4347 -0.9367 33 1 5.2749 1.5233 1.7531 34 1 6.8432 2.3412 1.5542 35 1 6.6252 2.3332 5.1612 36 1 5.7789 4.8902 0.5199 37 1 5.6300 4.4619 -1.2014 38 1 7.8319 4.4483 1.7370 39 1 11.3163 3.4810 -0.5313 40 1 7.4747 3.4232 -2.3870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140542179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:34 Heat of formation + Delta-G solvation = -126.170033 kcal Electronic energy + Delta-G solvation = -25937.722631 eV Core-core repulsion = 21885.379378 eV Total energy + Delta-G solvation = -4052.343253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.95001 -41.41456 -40.42375 -38.45951 -37.49814 -37.04196 -34.60238 -32.91926 -32.43985 -31.42640 -29.67556 -28.54275 -26.25080 -24.48201 -23.74507 -23.47395 -22.13955 -21.30677 -19.08350 -18.37295 -18.18984 -17.65614 -17.60442 -17.20591 -17.00030 -16.73970 -16.58007 -16.10692 -15.81972 -15.63462 -14.94264 -14.77659 -14.44726 -14.16341 -14.09969 -13.94914 -13.55029 -13.28975 -13.09136 -12.95169 -12.88912 -12.58994 -12.54610 -12.44175 -12.30283 -12.27524 -12.23197 -12.04346 -11.82007 -11.65829 -11.44506 -11.25245 -10.57177 -9.87080 -9.65111 -9.06120 -8.12650 -6.32128 0.03738 0.08219 1.00106 1.37718 1.39630 1.39906 1.47077 1.74494 2.38016 2.43893 3.14090 3.24022 3.45994 3.68219 3.93894 3.98507 4.03115 4.05338 4.15800 4.25762 4.31680 4.37695 4.40424 4.62176 4.70449 4.77718 4.88828 4.95870 4.96271 5.08441 5.09449 5.17692 5.24938 5.40763 5.51397 5.55995 5.75767 5.80215 5.95729 6.18093 6.35714 6.88264 6.97866 7.39500 8.90000 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.008778 B = 0.004674 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.900224 B = 5988.805566 C = 8572.614232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.464 3.536 5 O -0.528 6.528 6 C 0.067 3.933 7 N -0.530 5.530 8 C 0.203 3.797 9 C -0.552 4.552 10 H 0.073 0.927 11 C 0.017 3.983 12 N -0.924 5.924 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.293 1.293 16 H -0.264 1.264 17 C 0.099 3.901 18 C -0.030 4.030 19 C -0.134 4.134 20 C 0.087 3.913 21 F -0.147 7.147 22 C -0.147 4.147 23 C -0.015 4.015 24 Cl -0.049 7.049 25 C -0.096 4.096 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.147 0.853 33 H -0.008 1.008 34 H 0.015 0.985 35 H 0.261 0.739 36 H 0.056 0.944 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.160 0.840 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 3.417 -13.852 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.307 3.693 5 O -0.416 6.416 6 C -0.061 4.061 7 N -0.254 5.254 8 C 0.076 3.924 9 C -0.591 4.591 10 H 0.091 0.909 11 C -0.183 4.183 12 N -0.564 5.564 13 Si 0.772 3.228 14 H -0.192 1.192 15 H -0.219 1.219 16 H -0.189 1.189 17 C -0.028 4.028 18 C -0.031 4.031 19 C -0.153 4.153 20 C 0.068 3.932 21 F -0.125 7.125 22 C -0.166 4.166 23 C -0.042 4.042 24 Cl -0.020 7.020 25 C -0.115 4.115 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.164 0.836 33 H 0.010 0.990 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.177 0.823 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.883 2.616 -14.126 14.653 hybrid contribution 0.136 0.484 2.196 2.252 sum -2.747 3.100 -11.930 12.629 Atomic orbital electron populations 1.21796 0.89879 1.04331 1.03795 1.23214 0.97365 0.79684 1.01851 1.86473 1.24129 1.33330 1.84285 1.24151 0.80340 0.93445 0.71377 1.90628 1.61089 1.44244 1.45674 1.21591 0.89394 0.89366 1.05776 1.62090 1.05864 1.29689 1.27748 1.19422 0.95640 0.94118 0.83170 1.21926 1.34636 1.08671 0.93857 0.90927 1.25737 0.94900 0.97299 1.00342 1.70100 1.38749 1.31258 1.16258 0.85777 0.79022 0.79992 0.77998 1.19189 1.21885 1.18902 1.21057 0.88616 0.90687 1.02432 1.19575 0.96080 0.95976 0.91482 1.21395 0.91977 1.01412 1.00548 1.17632 0.88820 1.03313 0.83473 1.91471 1.75312 1.92897 1.52868 1.21000 1.02002 1.03503 0.90139 1.20528 0.93015 1.02792 0.87872 1.98362 1.82818 1.90518 1.30307 1.21168 0.92568 0.98787 0.98968 0.90479 0.88194 0.91726 0.91165 0.93115 0.89897 0.83590 0.99015 0.96723 0.92970 0.92597 0.86535 0.85840 0.82276 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 10.29 71.98 0.74 -1.75 16 2 C 0.05 1.40 6.19 71.98 0.45 1.84 16 3 O -0.37 -11.65 10.22 -51.41 -0.53 -12.18 16 4 C 0.46 17.35 7.54 71.24 0.54 17.89 16 5 O -0.53 -23.92 14.90 21.97 0.33 -23.59 16 6 C 0.07 2.23 5.42 85.56 0.46 2.69 16 7 N -0.53 -20.54 4.29 -909.95 -3.91 -24.45 16 8 C 0.20 10.23 4.39 85.56 0.38 10.60 16 9 C -0.55 -27.92 6.74 25.60 0.17 -27.74 16 10 H 0.07 3.39 5.97 -2.91 -0.02 3.38 16 11 C 0.02 0.93 5.46 84.65 0.46 1.39 16 12 N -0.92 -54.64 13.29 21.45 0.28 -54.35 16 13 Si 0.95 42.06 29.54 68.60 2.03 44.08 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 15 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 17 C 0.10 3.11 4.90 85.56 0.42 3.53 16 18 C -0.03 -1.00 4.88 -19.87 -0.10 -1.09 16 19 C -0.13 -5.10 7.96 22.32 0.18 -4.92 16 20 C 0.09 3.09 7.30 22.37 0.16 3.25 16 21 F -0.15 -5.54 17.27 44.97 0.78 -4.76 16 22 C -0.15 -4.29 9.81 22.33 0.22 -4.08 16 23 C -0.02 -0.42 6.32 22.32 0.14 -0.27 16 24 Cl -0.05 -1.11 28.96 -2.72 -0.08 -1.19 16 25 C -0.10 -2.68 9.48 22.30 0.21 -2.47 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 30 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.08 2.89 6.40 -2.39 -0.02 2.87 16 32 H 0.15 3.36 7.81 -2.39 -0.02 3.34 16 33 H -0.01 -0.49 6.58 -2.39 -0.02 -0.51 16 34 H 0.01 0.82 6.20 -2.39 -0.01 0.81 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.06 1.90 6.31 -2.39 -0.02 1.88 16 37 H 0.12 2.62 7.80 -2.39 -0.02 2.60 16 38 H 0.12 5.47 7.43 -2.91 -0.02 5.45 16 39 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -67.46 356.06 4.41 -63.05 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.07 Total: 14.52 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 4.43 Total: -1.13 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -3.62 Total: -78.80 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.20 Total: -35.77 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.78 Total: -4.76 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -67.46 4.41 -63.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140542179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.115 kcal (2) G-P(sol) polarization free energy of solvation -67.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds