Wall clock time and date at job start Sat Apr 11 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47485 * 2 1 4 4 C 1.34229 * 117.00286 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99856 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00154 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47198 * 179.97438 * 6 4 3 8 8 C 1.46899 * 111.00117 * 66.04194 * 7 6 4 9 9 C 1.50702 * 109.46983 * 199.58240 * 8 7 6 10 10 H 1.07998 * 120.00266 * 355.36032 * 9 8 7 11 11 C 1.37874 * 119.99846 * 175.35321 * 9 8 7 12 12 N 1.31509 * 120.00244 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00119 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47197 * 89.99533 * 13 11 9 15 15 H 1.48498 * 109.47041 * 209.99393 * 13 11 9 16 16 H 1.48501 * 109.46812 * 329.99525 * 13 11 9 17 17 C 1.46904 * 111.00080 * 189.99743 * 7 6 4 18 18 C 1.50702 * 109.47105 * 70.94599 * 17 7 6 19 19 C 1.38256 * 119.99965 * 256.03245 * 18 17 7 20 20 C 1.38218 * 120.06316 * 180.28012 * 19 18 17 21 21 C 1.38237 * 120.04897 * 359.71653 * 20 19 18 22 22 C 1.38399 * 119.98693 * 0.02562 * 21 20 19 23 23 F 1.35102 * 120.03266 * 179.97438 * 22 21 20 24 24 C 1.38287 * 119.98949 * 75.75472 * 18 17 7 25 25 Cl 1.73595 * 120.02392 * 359.97438 * 24 18 17 26 26 H 1.09001 * 109.46793 * 60.00329 * 1 2 3 27 27 H 1.09004 * 109.47637 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47535 * 300.00644 * 1 2 3 29 29 H 1.08996 * 109.47535 * 239.99356 * 2 1 3 30 30 H 1.09001 * 109.46793 * 119.99671 * 2 1 3 31 31 H 1.08997 * 109.47152 * 59.99208 * 6 4 3 32 32 H 1.09004 * 109.47122 * 299.99811 * 6 4 3 33 33 H 1.08998 * 109.46941 * 319.58587 * 8 7 6 34 34 H 1.09001 * 109.47074 * 79.58515 * 8 7 6 35 35 H 0.96997 * 120.00758 * 180.02562 * 12 11 9 36 36 H 1.09001 * 109.46908 * 310.95410 * 17 7 6 37 37 H 1.08993 * 109.47213 * 190.94914 * 17 7 6 38 38 H 1.07999 * 119.96340 * 359.97438 * 19 18 17 39 39 H 1.08000 * 119.97501 * 179.74276 * 20 19 18 40 40 H 1.07999 * 120.00375 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9373 0.0012 7 7 5.3878 2.8604 0.0023 8 6 5.8854 2.2768 -1.2507 9 6 7.2904 1.7717 -1.0464 10 1 7.7936 1.9405 -0.1058 11 6 7.9336 1.0940 -2.0602 12 7 9.1595 0.6527 -1.8819 13 14 7.0635 0.8024 -3.6874 14 1 7.3396 1.9358 -4.6064 15 1 7.5589 -0.4590 -4.2945 16 1 5.6005 0.6987 -3.4548 17 6 5.9841 4.1815 0.2410 18 6 5.7509 4.5865 1.6737 19 6 4.7842 5.5270 1.9777 20 6 4.5731 5.9037 3.2907 21 6 5.3244 5.3361 4.3029 22 6 6.2889 4.3905 4.0015 23 9 7.0240 3.8356 4.9900 24 6 6.4999 4.0129 2.6848 25 17 7.7083 2.8262 2.3044 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5845 3.4692 0.8911 32 1 3.5853 3.4697 -0.8888 33 1 5.2411 1.4490 -1.5469 34 1 5.8825 3.0370 -2.0318 35 1 9.6122 0.1762 -2.5952 36 1 5.5236 4.9133 -0.4228 37 1 7.0555 4.1373 0.0457 38 1 4.1968 5.9715 1.1878 39 1 3.8205 6.6416 3.5261 40 1 5.1586 5.6306 5.3286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140564036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:36 Heat of formation + Delta-G solvation = -117.671487 kcal Electronic energy + Delta-G solvation = -26293.012539 eV Core-core repulsion = 22241.037811 eV Total energy + Delta-G solvation = -4051.974728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.94037 -41.52470 -40.35189 -38.36158 -37.26629 -37.13832 -34.61870 -32.85893 -32.55605 -31.32134 -30.44071 -28.61091 -26.01296 -24.17052 -23.65242 -23.15367 -22.41178 -21.32575 -18.96273 -18.79909 -18.33634 -17.71176 -17.59024 -17.29309 -17.19129 -16.77473 -16.52392 -15.90420 -15.58112 -15.20209 -15.08989 -14.91104 -14.51125 -14.43553 -13.96343 -13.73935 -13.70786 -13.54285 -13.36948 -13.02640 -12.88235 -12.77015 -12.55033 -12.47496 -12.42909 -12.33050 -12.08047 -11.83324 -11.60103 -11.48299 -11.35185 -11.02338 -10.68335 -9.79956 -9.58632 -9.04946 -8.16840 -6.15067 0.07789 0.11202 1.28949 1.30941 1.33153 1.34614 1.42416 1.64906 2.39020 2.50328 3.11269 3.14150 3.26998 3.68082 3.83296 3.93973 3.99659 4.12024 4.13641 4.24176 4.29797 4.32816 4.36531 4.46376 4.58347 4.80121 4.85130 4.93685 4.94317 4.97671 5.07054 5.08681 5.15562 5.31781 5.40382 5.49824 5.69421 5.83560 5.98542 6.28931 6.64201 6.93044 6.99722 7.45458 8.99442 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.008367 B = 0.005836 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.509131 B = 4796.738230 C = 7078.069019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.451 3.549 5 O -0.518 6.518 6 C 0.062 3.938 7 N -0.525 5.525 8 C 0.171 3.829 9 C -0.498 4.498 10 H 0.071 0.929 11 C 0.004 3.996 12 N -0.953 5.953 13 Si 0.933 3.067 14 H -0.261 1.261 15 H -0.291 1.291 16 H -0.262 1.262 17 C 0.100 3.900 18 C -0.056 4.056 19 C -0.106 4.106 20 C -0.073 4.073 21 C -0.138 4.138 22 C 0.074 3.926 23 F -0.146 7.146 24 C -0.081 4.081 25 Cl -0.060 7.060 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.137 0.863 32 H 0.098 0.902 33 H 0.026 0.974 34 H -0.004 1.004 35 H 0.260 0.740 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.173 0.827 39 H 0.184 0.816 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.706 13.050 8.485 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.293 3.707 5 O -0.405 6.405 6 C -0.066 4.066 7 N -0.250 5.250 8 C 0.044 3.956 9 C -0.536 4.536 10 H 0.089 0.911 11 C -0.191 4.191 12 N -0.596 5.596 13 Si 0.758 3.242 14 H -0.186 1.186 15 H -0.217 1.217 16 H -0.187 1.187 17 C -0.026 4.026 18 C -0.057 4.057 19 C -0.124 4.124 20 C -0.091 4.091 21 C -0.157 4.157 22 C 0.054 3.946 23 F -0.125 7.125 24 C -0.109 4.109 25 Cl -0.031 7.031 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.116 0.884 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.190 0.810 39 H 0.202 0.798 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.099 12.185 8.765 24.291 hybrid contribution 0.873 -1.049 -1.249 1.850 sum -18.226 11.136 7.516 22.643 Atomic orbital electron populations 1.21788 0.89497 1.04321 1.04010 1.23224 0.97542 0.79698 1.01766 1.86457 1.23739 1.33196 1.84355 1.24215 0.80591 0.93611 0.72256 1.90763 1.60952 1.44222 1.44563 1.21743 0.89297 0.89504 1.06050 1.61398 1.03147 1.22607 1.37875 1.20048 0.95382 0.93822 0.86314 1.21582 0.97841 1.33058 1.01156 0.91073 1.25696 0.95422 0.95897 1.02118 1.70046 1.13965 1.41094 1.34468 0.85932 0.79516 0.77978 0.80736 1.18579 1.21705 1.18690 1.20988 1.01141 0.88908 0.91591 1.19811 0.95535 0.96334 0.94041 1.21555 0.96124 0.95804 0.98925 1.21540 0.98332 0.98555 0.90679 1.21496 0.94942 0.95961 1.03315 1.17883 0.95562 0.98258 0.82922 1.91479 1.76080 1.84541 1.60355 1.21352 0.98111 0.97516 0.93954 1.98469 1.54407 1.56053 1.94156 0.90976 0.88452 0.90673 0.92630 0.92139 0.84575 0.88438 0.95598 0.98667 0.93092 0.90357 0.90954 0.80977 0.79829 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 10.29 71.98 0.74 -1.41 16 2 C 0.05 1.29 6.19 71.98 0.45 1.73 16 3 O -0.36 -10.34 10.22 -51.41 -0.53 -10.87 16 4 C 0.45 15.99 7.47 71.23 0.53 16.52 16 5 O -0.52 -24.00 14.29 21.98 0.31 -23.68 16 6 C 0.06 1.84 5.41 85.56 0.46 2.31 16 7 N -0.53 -20.50 4.05 -909.95 -3.69 -24.19 16 8 C 0.17 8.17 3.34 85.56 0.29 8.46 16 9 C -0.50 -29.15 9.11 25.60 0.23 -28.92 16 10 H 0.07 4.45 6.21 -2.91 -0.02 4.43 16 11 C 0.00 0.26 5.47 84.65 0.46 0.72 16 12 N -0.95 -62.11 13.96 21.45 0.30 -61.81 16 13 Si 0.93 46.48 27.56 68.60 1.89 48.37 16 14 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 16 H -0.26 -12.62 6.41 99.48 0.64 -11.98 16 17 C 0.10 3.29 4.26 85.56 0.36 3.66 16 18 C -0.06 -1.54 4.67 -19.85 -0.09 -1.64 16 19 C -0.11 -1.77 8.82 22.27 0.20 -1.57 16 20 C -0.07 -0.95 10.04 22.26 0.22 -0.73 16 21 C -0.14 -2.52 10.03 22.31 0.22 -2.30 16 22 C 0.07 2.09 7.28 22.39 0.16 2.26 16 23 F -0.15 -4.64 16.84 44.97 0.76 -3.88 16 24 C -0.08 -2.71 6.32 22.37 0.14 -2.57 16 25 Cl -0.06 -2.59 25.58 -2.72 -0.07 -2.66 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 30 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.14 3.11 6.55 -2.39 -0.02 3.09 16 32 H 0.10 2.31 8.12 -2.39 -0.02 2.29 16 33 H 0.03 1.34 4.58 -2.39 -0.01 1.33 16 34 H 0.00 -0.19 7.66 -2.39 -0.02 -0.21 16 35 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 36 H 0.08 1.96 7.88 -2.39 -0.02 1.94 16 37 H 0.07 2.95 6.69 -2.39 -0.02 2.93 16 38 H 0.17 1.61 8.01 -2.91 -0.02 1.59 16 39 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -82.20 352.64 4.36 -77.85 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.00 Total: 4.36 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.38 Total: -3.48 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -3.39 Total: -86.01 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.21 Total: -34.55 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.76 Total: -3.88 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.89 Total: 48.37 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -0.07 Total: -2.66 kcal Total: -82.20 4.36 -77.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140564036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.824 kcal (2) G-P(sol) polarization free energy of solvation -82.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds