Wall clock time and date at job start Sat Apr 11 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47247 * 270.00028 * 3 2 1 5 5 H 1.48492 * 109.47154 * 30.00261 * 3 2 1 6 6 H 1.48504 * 109.46877 * 150.00359 * 3 2 1 7 7 C 1.37877 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99767 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00145 * 179.97438 * 7 2 1 10 10 C 1.53508 * 114.17003 * 179.97438 * 9 7 2 11 11 N 1.47477 * 87.93486 * 220.14177 * 10 9 7 12 12 C 1.46898 * 111.00428 * 138.70369 * 11 10 9 13 13 C 1.50696 * 109.47266 * 169.99818 * 12 11 10 14 14 N 1.31995 * 120.06312 * 83.75912 * 13 12 11 15 15 C 1.32199 * 120.09427 * 180.02562 * 14 13 12 16 16 C 1.38431 * 120.22543 * 0.28275 * 15 14 13 17 17 N 1.32026 * 120.12598 * 359.42911 * 16 15 14 18 18 C 1.32953 * 119.90003 * 0.56476 * 17 16 15 19 19 C 1.48319 * 120.10983 * 179.73796 * 18 17 16 20 20 C 1.39384 * 120.11146 * 44.85996 * 19 18 17 21 21 C 1.37980 * 119.88613 * 179.75263 * 20 19 18 22 22 C 1.38447 * 120.10982 * 0.54700 * 21 20 19 23 23 Cl 1.73601 * 119.88804 * 179.72295 * 22 21 20 24 24 C 1.38453 * 120.22458 * 359.70885 * 22 21 20 25 25 C 1.37976 * 120.11119 * 0.02562 * 24 22 21 26 26 C 1.47476 * 87.83662 * 27.01173 * 11 10 9 27 27 H 0.96996 * 120.00124 * 359.97438 * 1 2 3 28 28 H 1.08989 * 113.25523 * 312.95208 * 9 7 2 29 29 H 1.09001 * 113.47946 * 105.37473 * 10 9 7 30 30 H 1.09008 * 113.53440 * 334.91804 * 10 9 7 31 31 H 1.09000 * 109.46899 * 50.00071 * 12 11 10 32 32 H 1.08993 * 109.47188 * 290.00408 * 12 11 10 33 33 H 1.08006 * 119.88522 * 179.97438 * 15 14 13 34 34 H 1.08004 * 119.94024 * 179.72300 * 16 15 14 35 35 H 1.08001 * 120.05024 * 0.03065 * 20 19 18 36 36 H 1.07994 * 119.94185 * 180.25686 * 21 20 19 37 37 H 1.07998 * 119.94602 * 179.97438 * 24 22 21 38 38 H 1.08002 * 120.05596 * 180.02562 * 25 24 22 39 39 H 1.08999 * 113.47783 * 87.75746 * 26 11 10 40 40 H 1.09001 * 113.47984 * 218.22740 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.1401 -2.5945 -0.0010 11 7 5.1466 -2.0845 0.9486 12 6 5.4214 -3.0689 2.0037 13 6 6.6175 -2.6250 2.8058 14 7 6.4680 -1.7623 3.7935 15 6 7.5169 -1.3720 4.4972 16 6 8.7772 -1.8608 4.1989 17 7 8.9360 -2.7285 3.2165 18 6 7.8846 -3.1244 2.5055 19 6 8.0585 -4.0945 1.3971 20 6 8.8549 -5.2245 1.5753 21 6 9.0094 -6.1265 0.5427 22 6 8.3840 -5.9049 -0.6724 23 17 8.5881 -7.0400 -1.9700 24 6 7.5962 -4.7813 -0.8562 25 6 7.4310 -3.8761 0.1719 26 6 4.1449 -1.0981 1.3940 27 1 -0.4850 0.8400 0.0004 28 1 3.9416 -0.5116 -0.7340 29 1 4.5594 -2.8824 -0.9651 30 1 3.4927 -3.3622 0.4230 31 1 5.6272 -4.0389 1.5510 32 1 4.5544 -3.1506 2.6591 33 1 7.3908 -0.6656 5.3044 34 1 9.6316 -1.5355 4.7739 35 1 9.3466 -5.3958 2.5215 36 1 9.6229 -7.0044 0.6812 37 1 7.1108 -4.6127 -1.8061 38 1 6.8159 -3.0001 0.0277 39 1 3.4981 -1.4655 2.1907 40 1 4.5681 -0.1176 1.6122 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142967480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:41 Heat of formation + Delta-G solvation = 111.009370 kcal Electronic energy + Delta-G solvation = -24950.346434 eV Core-core repulsion = 21371.350027 eV Total energy + Delta-G solvation = -3578.996406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.38523 -39.31899 -39.07770 -36.67623 -34.56636 -33.72248 -32.48198 -31.30234 -30.30505 -29.20572 -26.50414 -25.16635 -24.86968 -23.69673 -22.81235 -21.83920 -21.45881 -18.74934 -17.83732 -17.70633 -17.10610 -16.63075 -16.07337 -15.67349 -15.31369 -14.96856 -14.62941 -14.47178 -13.99809 -13.70564 -13.65791 -13.48619 -13.41380 -12.89650 -12.59206 -12.00516 -11.94386 -11.85141 -11.67980 -11.61773 -11.35783 -11.19288 -11.08304 -10.95771 -10.45005 -10.13053 -10.01299 -9.80515 -9.39639 -9.21871 -9.17864 -9.12937 -8.60608 -8.50450 -8.31986 -6.13664 -4.14501 0.31497 0.93741 1.14309 1.27360 1.92789 3.27662 3.33873 3.36518 3.41108 3.57592 3.83120 4.06746 4.33673 4.39448 4.49284 4.66672 4.69009 4.81378 4.98297 5.07639 5.11557 5.17318 5.20713 5.30431 5.45828 5.52852 5.68574 5.78784 5.88574 5.93967 6.02688 6.08736 6.22282 6.25461 6.32511 6.35187 6.41331 6.59597 6.73684 6.83522 7.20066 7.28889 7.60117 7.70785 7.72060 8.44459 8.89271 9.49237 10.98753 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.003898 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.366471 B = 7181.092962 C = 9319.862321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.511 4.511 8 H 0.075 0.925 9 C 0.000 4.000 10 C 0.009 3.991 11 N -0.483 5.483 12 C 0.060 3.940 13 C 0.124 3.876 14 N -0.426 5.426 15 C 0.052 3.948 16 C 0.041 3.959 17 N -0.430 5.430 18 C 0.122 3.878 19 C -0.041 4.041 20 C -0.072 4.072 21 C -0.120 4.120 22 C -0.024 4.024 23 Cl -0.073 7.073 24 C -0.112 4.112 25 C -0.081 4.081 26 C 0.000 4.000 27 H 0.265 0.735 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.166 0.834 39 H 0.070 0.930 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.578 -9.746 4.888 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.127 4.127 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.549 4.549 8 H 0.093 0.907 9 C -0.020 4.020 10 C -0.119 4.119 11 N -0.206 5.206 12 C -0.069 4.069 13 C -0.017 4.017 14 N -0.140 5.140 15 C -0.108 4.108 16 C -0.120 4.120 17 N -0.144 5.144 18 C -0.018 4.018 19 C -0.043 4.043 20 C -0.092 4.092 21 C -0.139 4.139 22 C -0.051 4.051 23 Cl -0.044 7.044 24 C -0.131 4.131 25 C -0.099 4.099 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.186 0.814 34 H 0.187 0.813 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.183 0.817 39 H 0.088 0.912 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.102 -9.530 4.597 22.717 hybrid contribution -0.205 0.627 0.538 0.851 sum 19.897 -8.903 5.134 22.394 Atomic orbital electron populations 1.69903 1.06417 1.27155 1.50001 1.24995 0.94613 0.99193 0.93912 0.86891 0.80794 0.83503 0.78637 1.20309 1.21496 1.18185 1.20885 0.88104 0.94546 1.51384 0.90706 1.20523 0.96396 0.92514 0.92520 1.23858 0.92256 0.99885 0.95875 1.68762 1.32424 1.09511 1.09889 1.21678 0.93873 0.97188 0.94191 1.22192 0.94951 0.91936 0.92631 1.68334 1.33084 1.08424 1.04180 1.23845 0.89432 0.98697 0.98791 1.23686 0.98519 0.94629 0.95123 1.68452 1.31945 1.09763 1.04252 1.20463 0.89779 0.96564 0.95000 1.18363 0.99307 0.94156 0.92425 1.21112 0.96372 0.92729 0.98937 1.20927 1.00889 1.00560 0.91514 1.21113 1.00876 0.93001 0.90060 1.98374 1.96370 1.60460 1.49198 1.21070 0.98703 0.92932 1.00399 1.21979 0.97130 1.00176 0.90656 1.24422 0.91688 0.95552 1.01191 0.92558 0.92568 0.91156 0.91574 0.89149 0.91302 0.81372 0.81322 0.84932 0.84760 0.84259 0.81656 0.91184 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 20.92 27.14 -169.99 -4.61 16.30 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -5.90 5.68 56.52 0.32 -5.58 16 7 C -0.51 -13.62 9.38 -34.44 -0.32 -13.95 16 8 H 0.07 2.16 8.06 -52.48 -0.42 1.74 16 9 C 0.00 0.00 2.95 -91.24 -0.27 -0.27 16 10 C 0.01 0.17 7.02 -7.56 -0.05 0.12 16 11 N -0.48 -8.41 4.43 -246.12 -1.09 -9.50 16 12 C 0.06 0.92 4.08 -4.98 -0.02 0.90 16 13 C 0.12 1.88 6.36 -82.06 -0.52 1.36 16 14 N -0.43 -6.42 10.41 -9.02 -0.09 -6.52 16 15 C 0.05 0.60 11.22 -17.32 -0.19 0.40 16 16 C 0.04 0.44 11.22 -17.40 -0.20 0.24 16 17 N -0.43 -5.62 10.33 -9.59 -0.10 -5.72 16 18 C 0.12 1.70 6.35 -82.78 -0.53 1.17 16 19 C -0.04 -0.52 5.04 -104.90 -0.53 -1.05 16 20 C -0.07 -0.79 9.67 -39.25 -0.38 -1.17 16 21 C -0.12 -1.20 9.81 -39.60 -0.39 -1.59 16 22 C -0.02 -0.26 6.32 -39.43 -0.25 -0.50 16 23 Cl -0.07 -0.73 28.95 -51.86 -1.50 -2.23 16 24 C -0.11 -1.28 9.81 -39.60 -0.39 -1.67 16 25 C -0.08 -1.03 7.62 -39.25 -0.30 -1.33 16 26 C 0.00 0.00 6.70 -7.55 -0.05 -0.05 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.06 1.27 7.04 -51.93 -0.37 0.90 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.21 7.87 -51.92 -0.41 0.80 16 31 H 0.09 1.26 5.76 -51.93 -0.30 0.96 16 32 H 0.07 1.12 7.30 -51.93 -0.38 0.74 16 33 H 0.17 1.34 8.06 -52.48 -0.42 0.91 16 34 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.17 2.35 5.05 -52.49 -0.26 2.08 16 39 H 0.07 1.49 7.38 -51.93 -0.38 1.11 16 40 H 0.06 1.34 7.11 -51.93 -0.37 0.97 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -30.29 346.43 -10.53 -40.83 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.65 Total: 2.89 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -4.48 Total: -15.39 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.51 Total: -47.62 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.61 Total: 16.30 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.29 -10.53 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142967480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.837 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds