Wall clock time and date at job start Sat Apr 11 2020 02:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47247 * 270.00028 * 3 2 1 5 5 H 1.48492 * 109.47154 * 30.00261 * 3 2 1 6 6 H 1.48504 * 109.46877 * 150.00359 * 3 2 1 7 7 C 1.37877 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99767 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00145 * 179.97438 * 7 2 1 10 10 C 1.53508 * 114.17003 * 179.97438 * 9 7 2 11 11 N 1.47477 * 87.93486 * 220.14177 * 10 9 7 12 12 C 1.46898 * 111.00428 * 138.70369 * 11 10 9 13 13 C 1.50696 * 109.47266 * 169.99818 * 12 11 10 14 14 N 1.31995 * 120.06312 * 83.75912 * 13 12 11 15 15 C 1.32199 * 120.09427 * 180.02562 * 14 13 12 16 16 C 1.38431 * 120.22543 * 0.28275 * 15 14 13 17 17 N 1.32026 * 120.12598 * 359.42911 * 16 15 14 18 18 C 1.32953 * 119.90003 * 0.56476 * 17 16 15 19 19 C 1.48319 * 120.10983 * 179.73796 * 18 17 16 20 20 C 1.39384 * 120.11146 * 44.85996 * 19 18 17 21 21 C 1.37980 * 119.88613 * 179.75263 * 20 19 18 22 22 C 1.38447 * 120.10982 * 0.54700 * 21 20 19 23 23 Cl 1.73601 * 119.88804 * 179.72295 * 22 21 20 24 24 C 1.38453 * 120.22458 * 359.70885 * 22 21 20 25 25 C 1.37976 * 120.11119 * 0.02562 * 24 22 21 26 26 C 1.47476 * 87.83662 * 27.01173 * 11 10 9 27 27 H 0.96996 * 120.00124 * 359.97438 * 1 2 3 28 28 H 1.08989 * 113.25523 * 312.95208 * 9 7 2 29 29 H 1.09001 * 113.47946 * 105.37473 * 10 9 7 30 30 H 1.09008 * 113.53440 * 334.91804 * 10 9 7 31 31 H 1.09000 * 109.46899 * 50.00071 * 12 11 10 32 32 H 1.08993 * 109.47188 * 290.00408 * 12 11 10 33 33 H 1.08006 * 119.88522 * 179.97438 * 15 14 13 34 34 H 1.08004 * 119.94024 * 179.72300 * 16 15 14 35 35 H 1.08001 * 120.05024 * 0.03065 * 20 19 18 36 36 H 1.07994 * 119.94185 * 180.25686 * 21 20 19 37 37 H 1.07998 * 119.94602 * 179.97438 * 24 22 21 38 38 H 1.08002 * 120.05596 * 180.02562 * 25 24 22 39 39 H 1.08999 * 113.47783 * 87.75746 * 26 11 10 40 40 H 1.09001 * 113.47984 * 218.22740 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.1401 -2.5945 -0.0010 11 7 5.1466 -2.0845 0.9486 12 6 5.4214 -3.0689 2.0037 13 6 6.6175 -2.6250 2.8058 14 7 6.4680 -1.7623 3.7935 15 6 7.5169 -1.3720 4.4972 16 6 8.7772 -1.8608 4.1989 17 7 8.9360 -2.7285 3.2165 18 6 7.8846 -3.1244 2.5055 19 6 8.0585 -4.0945 1.3971 20 6 8.8549 -5.2245 1.5753 21 6 9.0094 -6.1265 0.5427 22 6 8.3840 -5.9049 -0.6724 23 17 8.5881 -7.0400 -1.9700 24 6 7.5962 -4.7813 -0.8562 25 6 7.4310 -3.8761 0.1719 26 6 4.1449 -1.0981 1.3940 27 1 -0.4850 0.8400 0.0004 28 1 3.9416 -0.5116 -0.7340 29 1 4.5594 -2.8824 -0.9651 30 1 3.4927 -3.3622 0.4230 31 1 5.6272 -4.0389 1.5510 32 1 4.5544 -3.1506 2.6591 33 1 7.3908 -0.6656 5.3044 34 1 9.6316 -1.5355 4.7739 35 1 9.3466 -5.3958 2.5215 36 1 9.6229 -7.0044 0.6812 37 1 7.1108 -4.6127 -1.8061 38 1 6.8159 -3.0001 0.0277 39 1 3.4981 -1.4655 2.1907 40 1 4.5681 -0.1176 1.6122 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142967480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:40 Heat of formation + Delta-G solvation = 92.270603 kcal Electronic energy + Delta-G solvation = -24951.159008 eV Core-core repulsion = 21371.350027 eV Total energy + Delta-G solvation = -3579.808980 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.37129 -40.70665 -40.05893 -37.49235 -35.61701 -34.96215 -34.26977 -32.17940 -31.52925 -30.35484 -28.06070 -26.72317 -25.82923 -25.10996 -23.70663 -22.87477 -22.63500 -20.45456 -19.16569 -18.70890 -18.60000 -17.54356 -17.13505 -17.01108 -16.39390 -16.19079 -15.93550 -15.68860 -15.11889 -15.07203 -14.71169 -14.65537 -14.49358 -14.34435 -13.98997 -13.45929 -13.19703 -12.95506 -12.79471 -12.65679 -12.60012 -12.53543 -12.18609 -12.09144 -11.84966 -11.80300 -11.74081 -11.48488 -11.10211 -10.65305 -10.44928 -10.15832 -10.04389 -9.82227 -9.40478 -8.28555 -6.32906 -0.59985 0.00133 0.29583 0.36591 1.10744 1.37172 1.40176 1.51832 2.37603 2.45713 2.63560 2.92179 3.04839 3.06929 3.36621 3.43355 3.57887 3.82454 3.91850 3.99901 4.10362 4.17008 4.28618 4.30548 4.36449 4.43944 4.44902 4.61836 4.64552 4.66608 4.70743 4.89835 4.99865 5.03777 5.10073 5.21070 5.31727 5.36566 5.46163 5.48544 5.64073 5.73013 6.13352 6.27016 6.30749 6.73176 6.77515 7.34058 8.87486 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.003898 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.366471 B = 7181.092962 C = 9319.862321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.019 3.981 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.242 1.242 7 C -0.510 4.510 8 H 0.038 0.962 9 C -0.014 4.014 10 C 0.021 3.979 11 N -0.467 5.467 12 C 0.067 3.933 13 C 0.099 3.901 14 N -0.459 5.459 15 C 0.050 3.950 16 C 0.056 3.944 17 N -0.444 5.444 18 C 0.117 3.883 19 C -0.054 4.054 20 C -0.071 4.071 21 C -0.113 4.113 22 C -0.028 4.028 23 Cl -0.066 7.066 24 C -0.116 4.116 25 C -0.092 4.092 26 C 0.011 3.989 27 H 0.266 0.734 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.203 0.797 34 H 0.213 0.787 35 H 0.145 0.855 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.056 0.944 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.927 -9.854 5.623 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.165 1.165 7 C -0.548 4.548 8 H 0.056 0.944 9 C -0.034 4.034 10 C -0.107 4.107 11 N -0.190 5.190 12 C -0.062 4.062 13 C -0.042 4.042 14 N -0.174 5.174 15 C -0.110 4.110 16 C -0.106 4.106 17 N -0.159 5.159 18 C -0.022 4.022 19 C -0.055 4.055 20 C -0.090 4.090 21 C -0.131 4.131 22 C -0.055 4.055 23 Cl -0.037 7.037 24 C -0.134 4.134 25 C -0.111 4.111 26 C -0.118 4.118 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.220 0.780 34 H 0.230 0.770 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.074 0.926 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 23.467 -9.673 5.307 25.931 hybrid contribution -1.174 0.569 0.382 1.360 sum 22.292 -9.104 5.689 24.742 Atomic orbital electron populations 1.70046 1.08275 1.28092 1.52328 1.25829 0.95272 1.02969 0.93848 0.85869 0.79936 0.78876 0.79050 1.19467 1.21628 1.16521 1.21131 0.90590 0.93041 1.50065 0.94407 1.20519 0.93562 0.95496 0.93814 1.23712 0.92107 0.97501 0.97359 1.68726 1.30682 1.09412 1.10156 1.21577 0.94024 0.97167 0.93418 1.21993 0.95020 0.93532 0.93617 1.68269 1.35145 1.09092 1.04909 1.24468 0.89012 0.98678 0.98851 1.24420 0.99617 0.92636 0.93890 1.68538 1.31554 1.10704 1.05071 1.20530 0.89515 0.96739 0.95409 1.18459 1.00109 0.94780 0.92184 1.21250 0.95904 0.92172 0.99677 1.21189 1.00285 1.00888 0.90744 1.21211 1.00754 0.92931 0.90611 1.98378 1.96306 1.60077 1.48937 1.21156 0.98861 0.92987 1.00422 1.21819 0.97784 1.00170 0.91329 1.24111 0.92089 0.96201 0.99384 0.92537 0.92285 0.88780 0.92013 0.87791 0.92700 0.78029 0.77023 0.83736 0.82380 0.83523 0.83257 0.92612 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 2 C 0.02 1.05 5.47 84.65 0.46 1.52 16 3 Si 0.94 43.56 27.14 68.60 1.86 45.42 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.24 -10.50 5.68 99.48 0.56 -9.93 16 7 C -0.51 -28.02 9.38 25.60 0.24 -27.78 16 8 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 9 C -0.01 -0.64 2.95 -11.19 -0.03 -0.68 16 10 C 0.02 0.78 7.02 83.57 0.59 1.36 16 11 N -0.47 -16.10 4.43 -932.57 -4.13 -20.23 16 12 C 0.07 2.07 4.08 85.56 0.35 2.42 16 13 C 0.10 2.90 6.36 42.83 0.27 3.17 16 14 N -0.46 -13.32 10.41 -182.46 -1.90 -15.22 16 15 C 0.05 1.01 11.22 84.68 0.95 1.96 16 16 C 0.06 0.99 11.22 84.71 0.95 1.95 16 17 N -0.44 -10.53 10.33 -184.26 -1.90 -12.44 16 18 C 0.12 3.09 6.35 41.96 0.27 3.35 16 19 C -0.05 -1.30 5.04 -20.04 -0.10 -1.40 16 20 C -0.07 -1.40 9.67 22.48 0.22 -1.19 16 21 C -0.11 -1.97 9.81 22.26 0.22 -1.75 16 22 C -0.03 -0.55 6.32 22.37 0.14 -0.41 16 23 Cl -0.07 -1.20 28.95 -2.72 -0.08 -1.28 16 24 C -0.12 -2.49 9.81 22.26 0.22 -2.27 16 25 C -0.09 -2.25 7.62 22.48 0.17 -2.08 16 26 C 0.01 0.46 6.70 83.57 0.56 1.02 16 27 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.06 2.61 7.04 -2.39 -0.02 2.59 16 29 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.06 2.28 7.87 -2.38 -0.02 2.26 16 31 H 0.10 2.87 5.76 -2.39 -0.01 2.85 16 32 H 0.05 1.82 7.30 -2.39 -0.02 1.80 16 33 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.21 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 38 H 0.15 4.13 5.05 -2.91 -0.01 4.12 16 39 H 0.06 2.43 7.38 -2.39 -0.02 2.41 16 40 H 0.06 2.39 7.11 -2.39 -0.02 2.38 16 Total: -1.00 -67.49 346.43 0.55 -66.94 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.93 Total: 15.52 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 5.47 Total: -20.81 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -7.64 Total: -105.79 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.86 Total: 45.42 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -67.49 0.55 -66.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142967480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.212 kcal (2) G-P(sol) polarization free energy of solvation -67.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds