Wall clock time and date at job start Sat Apr 11 2020 02:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30384 * 125.47719 * 2 1 4 4 C 1.35444 * 109.93322 * 179.70245 * 3 2 1 5 5 C 1.39768 * 145.18072 * 179.27563 * 4 3 2 6 6 C 1.46735 * 126.51527 * 1.00448 * 5 4 3 7 7 O 1.21700 * 120.00209 * 359.71115 * 6 5 4 8 8 N 1.34777 * 120.00337 * 179.70902 * 6 5 4 9 9 C 1.39943 * 120.00197 * 175.48191 * 8 6 5 10 10 C 1.39390 * 119.91095 * 215.55189 * 9 8 6 11 11 C 1.38365 * 120.46989 * 179.72044 * 10 9 8 12 12 C 1.38008 * 120.28607 * 0.27873 * 11 10 9 13 13 F 1.35096 * 120.09393 * 179.97438 * 12 11 10 14 14 C 1.41017 * 119.81514 * 359.97438 * 12 11 10 15 15 C 1.41295 * 120.22686 * 180.02562 * 14 12 11 16 16 H 1.08006 * 120.00014 * 24.73155 * 15 14 12 17 17 C 1.39918 * 120.00152 * 204.73423 * 15 14 12 18 18 N 1.30859 * 119.99829 * 15.35432 * 17 15 14 19 19 Si 1.86803 * 120.00356 * 195.36040 * 17 15 14 20 20 H 1.48503 * 109.46670 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47302 * 119.99519 * 19 17 15 22 22 H 1.48497 * 109.47036 * 240.00013 * 19 17 15 23 23 C 1.38155 * 119.91602 * 35.78509 * 9 8 6 24 24 C 1.41320 * 106.97223 * 180.73859 * 5 4 3 25 25 N 1.30395 * 108.45778 * 0.26817 * 24 5 4 26 26 N 1.36109 * 108.00550 * 0.44643 * 4 3 2 27 27 N 1.36472 * 125.47546 * 179.97438 * 2 1 3 28 28 H 0.97008 * 126.62838 * 0.04300 * 27 2 1 29 29 H 1.09000 * 109.47260 * 270.02390 * 1 2 3 30 30 H 1.08991 * 109.47058 * 30.02756 * 1 2 3 31 31 H 1.09007 * 109.47034 * 150.03115 * 1 2 3 32 32 H 0.97005 * 119.99794 * 355.48202 * 8 6 5 33 33 H 1.08000 * 119.76652 * 0.02562 * 10 9 8 34 34 H 1.07995 * 119.85888 * 180.25067 * 11 10 9 35 35 H 0.97004 * 119.99857 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.14465 * 0.02562 * 23 9 8 37 37 H 1.08004 * 125.77352 * 180.23945 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0618 0.0000 4 6 3.5686 0.6988 0.0066 5 6 4.8879 1.1601 0.0007 6 6 5.3229 2.5615 0.0005 7 8 4.4967 3.4551 0.0004 8 7 6.6374 2.8592 0.0003 9 6 7.0530 4.1920 -0.0954 10 6 8.2101 4.5101 -0.8046 11 6 8.6285 5.8246 -0.9115 12 6 7.9064 6.8359 -0.3111 13 9 8.3187 8.1180 -0.4175 14 6 6.7368 6.5272 0.4138 15 6 5.9905 7.5557 1.0315 16 1 6.0465 8.5656 0.6528 17 6 5.1790 7.2660 2.1339 18 7 5.3302 6.1375 2.7790 19 14 3.8797 8.4898 2.6847 20 1 3.9112 9.6788 1.7955 21 1 2.5395 7.8541 2.6145 22 1 4.1559 8.9097 4.0820 23 6 6.3181 5.1886 0.5173 24 6 5.7234 0.0204 0.0013 25 7 4.9700 -1.0439 0.0013 26 7 3.6271 -0.6610 0.0009 27 7 2.2990 -1.1114 0.0005 28 1 2.0009 -2.0345 0.0003 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8903 -0.5134 32 1 7.2954 2.1495 0.0665 33 1 8.7814 3.7254 -1.2782 34 1 9.5243 6.0603 -1.4667 35 1 4.7679 5.9368 3.5435 36 1 5.4240 4.9412 1.0702 37 1 6.8034 0.0292 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154664878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:46 Heat of formation + Delta-G solvation = 125.872225 kcal Electronic energy + Delta-G solvation = -26769.892033 eV Core-core repulsion = 22659.663410 eV Total energy + Delta-G solvation = -4110.228623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.103 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -47.06023 -43.12305 -39.56078 -38.55673 -36.72594 -34.16650 -33.40774 -33.07948 -32.17248 -29.85473 -29.62503 -28.32356 -27.46790 -25.28503 -22.97076 -22.55241 -21.89412 -21.47448 -20.51494 -19.65503 -18.19373 -17.51741 -16.79733 -16.62560 -15.91491 -15.89253 -15.57698 -15.09670 -14.75810 -14.49877 -14.21040 -13.86678 -13.77055 -13.64638 -13.44804 -13.09490 -12.81741 -12.49583 -12.34427 -11.75261 -11.74179 -11.64165 -11.48410 -11.29827 -11.04775 -10.82976 -10.55665 -10.35401 -10.14832 -9.65008 -9.60347 -9.26421 -9.07208 -8.66427 -8.11413 -7.43417 -6.78066 -6.61395 -4.29462 0.22144 0.72900 1.89721 2.43350 2.76386 2.94513 3.16515 3.21291 3.23758 3.24544 3.46397 3.81630 4.01379 4.03295 4.10286 4.51438 4.67754 4.72236 4.87425 5.00459 5.21542 5.28762 5.57968 5.68214 5.77131 6.02540 6.07466 6.21290 6.50930 6.52515 6.91503 7.04471 7.11014 7.18595 7.28357 7.55685 7.58476 7.71431 7.81847 8.13834 8.26011 8.44830 8.63380 8.87561 8.96509 9.07019 10.24676 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.003753 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.206593 B = 7458.950000 C = 9221.958405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.352 3.648 3 N -0.468 5.468 4 C 0.306 3.694 5 C -0.263 4.263 6 C 0.587 3.413 7 O -0.505 6.505 8 N -0.664 5.664 9 C 0.139 3.861 10 C -0.243 4.243 11 C -0.109 4.109 12 C -0.045 4.045 13 F -0.166 7.166 14 C 0.093 3.907 15 C -0.447 4.447 16 H 0.083 0.917 17 C 0.076 3.924 18 N -0.781 5.781 19 Si 0.913 3.087 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.274 1.274 23 C -0.136 4.136 24 C 0.106 3.894 25 N -0.267 5.267 26 N -0.235 5.235 27 N -0.459 5.459 28 H 0.451 0.549 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.395 0.605 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.281 0.719 36 H 0.155 0.845 37 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 -18.114 -2.776 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.078 3.922 3 N -0.194 5.194 4 C 0.069 3.931 5 C -0.283 4.283 6 C 0.374 3.626 7 O -0.379 6.379 8 N -0.308 5.308 9 C 0.046 3.954 10 C -0.264 4.264 11 C -0.128 4.128 12 C -0.065 4.065 13 F -0.145 7.145 14 C 0.089 3.911 15 C -0.475 4.475 16 H 0.102 0.898 17 C -0.144 4.144 18 N -0.405 5.405 19 Si 0.737 3.263 20 H -0.183 1.183 21 H -0.195 1.195 22 H -0.200 1.200 23 C -0.158 4.158 24 C -0.077 4.077 25 N -0.093 5.093 26 N -0.102 5.102 27 N -0.192 5.192 28 H 0.300 0.700 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.229 0.771 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.172 0.828 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.420 -18.230 -2.584 20.682 hybrid contribution 0.189 -0.339 0.326 0.506 sum -9.231 -18.569 -2.259 20.860 Atomic orbital electron populations 1.20634 0.80896 1.06142 1.05778 1.24751 0.95770 0.79035 0.92594 1.70784 0.98418 1.25965 1.24262 1.20798 0.92898 0.81029 0.98422 1.18800 0.87751 0.94622 1.27150 1.16784 0.82517 0.86181 0.77118 1.90893 1.52042 1.47238 1.47745 1.43017 1.06445 1.07516 1.73795 1.17555 0.96279 0.82460 0.99059 1.19837 1.01370 0.95103 1.10108 1.20206 0.99233 0.92252 1.01140 1.17868 0.98560 0.77735 1.12364 1.91252 1.90307 1.37286 1.95641 1.17537 0.89251 0.93632 0.90653 1.19543 1.21107 0.96244 1.10632 0.89845 1.25911 0.96859 0.96025 0.95555 1.69797 1.33311 1.22493 1.14935 0.86183 0.80429 0.80951 0.78753 1.18253 1.19475 1.19963 1.21515 1.02060 0.90527 1.01652 1.24296 1.00027 0.87969 0.95382 1.77522 0.77814 1.21672 1.32265 1.50248 0.97643 1.06865 1.55409 1.45021 0.90909 1.10493 1.72753 0.70042 0.87702 0.86716 0.88930 0.77138 0.88319 0.87939 0.90757 0.82785 0.76889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 36.00 0.38 0.12 16 2 C 0.35 3.35 8.22 -154.19 -1.27 2.09 16 3 N -0.47 -7.43 11.25 -9.21 -0.10 -7.53 16 4 C 0.31 5.26 8.41 -154.85 -1.30 3.96 16 5 C -0.26 -4.60 6.16 -104.72 -0.65 -5.24 16 6 C 0.59 12.47 7.62 -12.83 -0.10 12.37 16 7 O -0.51 -13.21 14.38 5.19 0.07 -13.14 16 8 N -0.66 -12.97 5.32 -11.06 -0.06 -13.03 16 9 C 0.14 3.31 6.28 -83.76 -0.53 2.78 16 10 C -0.24 -5.35 9.97 -39.11 -0.39 -5.74 16 11 C -0.11 -2.54 10.00 -39.62 -0.40 -2.94 16 12 C -0.04 -1.20 7.31 -38.61 -0.28 -1.48 16 13 F -0.17 -4.38 16.71 2.25 0.04 -4.34 16 14 C 0.09 2.67 5.58 -106.78 -0.60 2.08 16 15 C -0.45 -12.78 8.79 -37.79 -0.33 -13.11 16 16 H 0.08 2.34 7.72 -52.48 -0.41 1.94 16 17 C 0.08 2.03 5.19 -17.34 -0.09 1.94 16 18 N -0.78 -21.45 10.83 55.55 0.60 -20.85 16 19 Si 0.91 20.09 29.59 -169.99 -5.03 15.06 16 20 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C -0.14 -3.78 7.32 -38.71 -0.28 -4.06 16 24 C 0.11 1.40 11.48 -16.99 -0.19 1.20 16 25 N -0.27 -3.69 12.59 30.86 0.39 -3.30 16 26 N -0.23 -3.27 5.98 31.24 0.19 -3.09 16 27 N -0.46 -4.09 7.50 32.90 0.25 -3.84 16 28 H 0.45 1.88 8.96 -182.48 -1.64 0.24 16 29 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.39 5.78 7.77 -40.82 -0.32 5.46 16 33 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 35 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 36 H 0.15 4.59 4.28 -52.49 -0.22 4.37 16 37 H 0.21 1.79 7.49 -52.48 -0.39 1.40 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -39.72 333.36 -8.88 -48.60 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.22 Total: 6.46 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -6.02 Total: -6.04 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 1.26 Total: -51.63 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.07 Total: -13.14 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.34 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -39.72 -8.88 -48.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154664878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.475 kcal (2) G-P(sol) polarization free energy of solvation -39.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds